View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16280_low_2 (Length: 518)

Name: NF16280_low_2
Description: NF16280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16280_low_2
NF16280_low_2
[»] chr2 (25 HSPs)
chr2 (11-502)||(3724598-3725089)
chr2 (427-502)||(9986520-9986596)
chr2 (427-502)||(27249324-27249400)
chr2 (430-502)||(45128040-45128112)
chr2 (430-502)||(8971801-8971874)
chr2 (422-502)||(40660102-40660182)
chr2 (422-502)||(36233832-36233913)
chr2 (427-502)||(3270401-3270477)
chr2 (427-494)||(41712946-41713014)
chr2 (422-502)||(33229161-33229242)
chr2 (422-502)||(40626200-40626281)
chr2 (445-502)||(7015883-7015941)
chr2 (422-502)||(20047254-20047335)
chr2 (422-502)||(21570581-21570662)
chr2 (422-502)||(30420504-30420585)
chr2 (430-502)||(34598822-34598895)
chr2 (427-502)||(6173464-6173540)
chr2 (440-502)||(459447-459510)
chr2 (431-502)||(32680755-32680826)
chr2 (441-502)||(2808643-2808705)
chr2 (430-489)||(31581888-31581948)
chr2 (435-485)||(10248005-10248056)
chr2 (427-502)||(25086868-25086942)
chr2 (427-502)||(17319158-17319233)
chr2 (422-502)||(39642032-39642113)
[»] chr1 (26 HSPs)
chr1 (422-502)||(40646515-40646596)
chr1 (422-502)||(19716069-19716150)
chr1 (433-502)||(40881186-40881256)
chr1 (427-502)||(35584794-35584870)
chr1 (430-502)||(51871700-51871772)
chr1 (444-502)||(50272313-50272372)
chr1 (424-501)||(50166273-50166350)
chr1 (427-490)||(50148204-50148268)
chr1 (427-494)||(19723166-19723233)
chr1 (422-502)||(5701084-5701165)
chr1 (444-496)||(30878924-30878977)
chr1 (430-502)||(51868818-51868891)
chr1 (445-502)||(20266151-20266210)
chr1 (448-502)||(25728132-25728187)
chr1 (430-502)||(7342557-7342630)
chr1 (422-467)||(31836693-31836738)
chr1 (422-502)||(33291592-33291673)
chr1 (435-494)||(18569491-18569551)
chr1 (430-496)||(5324736-5324803)
chr1 (429-493)||(45426244-45426310)
chr1 (433-502)||(30818518-30818588)
chr1 (430-502)||(9172323-9172396)
chr1 (430-502)||(9180305-9180378)
chr1 (441-486)||(48217475-48217520)
chr1 (433-494)||(11453773-11453835)
chr1 (458-501)||(7312272-7312316)
[»] chr6 (15 HSPs)
chr6 (422-502)||(25064058-25064139)
chr6 (427-502)||(8496793-8496869)
chr6 (422-502)||(12652763-12652844)
chr6 (422-502)||(33109657-33109738)
chr6 (427-502)||(4984750-4984826)
chr6 (430-502)||(17334607-17334679)
chr6 (427-502)||(23947490-23947566)
chr6 (433-502)||(8196580-8196649)
chr6 (441-502)||(10228522-10228583)
chr6 (446-502)||(33740751-33740808)
chr6 (430-502)||(16418990-16419062)
chr6 (431-493)||(8028300-8028363)
chr6 (441-502)||(4088301-4088363)
chr6 (458-502)||(7876218-7876263)
chr6 (434-502)||(12165676-12165745)
[»] chr7 (25 HSPs)
chr7 (427-496)||(2843406-2843476)
chr7 (430-502)||(35496348-35496421)
chr7 (422-502)||(46821837-46821918)
chr7 (433-502)||(32684519-32684589)
chr7 (438-496)||(6558755-6558815)
chr7 (405-501)||(26492171-26492268)
chr7 (422-502)||(26583537-26583618)
chr7 (430-502)||(42311111-42311184)
chr7 (427-502)||(12539128-12539204)
chr7 (422-502)||(48207727-48207806)
chr7 (444-501)||(46338898-46338956)
chr7 (430-502)||(22928043-22928116)
chr7 (422-494)||(21266215-21266288)
chr7 (422-501)||(1449003-1449083)
chr7 (435-502)||(1485429-1485497)
chr7 (430-494)||(23085353-23085416)
chr7 (422-502)||(17499819-17499900)
chr7 (422-502)||(17553314-17553395)
chr7 (422-502)||(20116406-20116487)
chr7 (422-502)||(35667404-35667484)
chr7 (430-502)||(433865-433936)
chr7 (427-486)||(45630030-45630089)
chr7 (435-502)||(6001856-6001925)
chr7 (422-486)||(14628069-14628134)
chr7 (470-502)||(23425544-23425576)
[»] scaffold0003 (1 HSPs)
scaffold0003 (422-502)||(361967-362048)
[»] scaffold0426 (1 HSPs)
scaffold0426 (430-502)||(6170-6242)
[»] chr8 (22 HSPs)
chr8 (427-502)||(9619531-9619607)
chr8 (422-491)||(9498785-9498855)
chr8 (427-502)||(14907097-14907173)
chr8 (422-502)||(11725512-11725593)
chr8 (422-502)||(43890298-43890379)
chr8 (422-502)||(44100105-44100186)
chr8 (411-502)||(11463991-11464083)
chr8 (424-502)||(17949079-17949158)
chr8 (444-501)||(4808816-4808874)
chr8 (422-502)||(44577868-44577947)
chr8 (445-496)||(2655722-2655774)
chr8 (430-502)||(35580295-35580369)
chr8 (421-502)||(11196721-11196803)
chr8 (430-499)||(33895920-33895989)
chr8 (422-502)||(42448201-42448282)
chr8 (445-502)||(34611657-34611715)
chr8 (447-502)||(12173358-12173413)
chr8 (447-502)||(12417786-12417841)
chr8 (427-502)||(32724661-32724739)
chr8 (435-502)||(28239675-28239744)
chr8 (422-502)||(33342269-33342348)
chr8 (430-494)||(27747293-27747358)
[»] chr3 (21 HSPs)
chr3 (427-502)||(25631700-25631776)
chr3 (422-501)||(32607288-32607369)
chr3 (422-502)||(4178385-4178466)
chr3 (430-502)||(36905950-36906023)
chr3 (427-502)||(12115919-12115995)
chr3 (427-502)||(44907572-44907648)
chr3 (422-502)||(51202422-51202503)
chr3 (427-502)||(38855210-38855285)
chr3 (427-502)||(39917569-39917645)
chr3 (427-493)||(25162262-25162329)
chr3 (422-502)||(4172387-4172468)
chr3 (427-502)||(50611590-50611666)
chr3 (444-502)||(14464350-14464409)
chr3 (429-502)||(49552396-49552470)
chr3 (441-502)||(47980841-47980903)
chr3 (441-502)||(47990128-47990190)
chr3 (441-502)||(47999415-47999477)
chr3 (441-502)||(48008702-48008764)
chr3 (430-502)||(46934471-46934544)
chr3 (441-490)||(2342332-2342382)
chr3 (435-502)||(3850628-3850695)
[»] chr4 (31 HSPs)
chr4 (422-502)||(9529051-9529132)
chr4 (427-502)||(44947243-44947319)
chr4 (421-494)||(43154201-43154275)
chr4 (422-502)||(9283746-9283827)
chr4 (422-502)||(10389926-10390007)
chr4 (427-502)||(1531746-1531822)
chr4 (424-502)||(50179608-50179687)
chr4 (422-502)||(25273710-25273791)
chr4 (422-502)||(43444228-43444309)
chr4 (430-502)||(53616824-53616897)
chr4 (427-502)||(2115761-2115837)
chr4 (422-502)||(50766682-50766765)
chr4 (422-494)||(867992-868065)
chr4 (430-502)||(31381844-31381917)
chr4 (427-502)||(38706883-38706957)
chr4 (430-502)||(6972653-6972725)
chr4 (427-502)||(20569092-20569168)
chr4 (422-496)||(9645728-9645803)
chr4 (406-502)||(10359719-10359817)
chr4 (445-502)||(3338836-3338894)
chr4 (411-487)||(21089974-21090054)
chr4 (441-494)||(47416738-47416792)
chr4 (422-502)||(4643691-4643772)
chr4 (430-472)||(29965518-29965560)
chr4 (435-501)||(35261036-35261102)
chr4 (427-487)||(1931891-1931952)
chr4 (422-502)||(37188765-37188846)
chr4 (430-494)||(5333711-5333774)
chr4 (430-502)||(56194439-56194515)
chr4 (441-502)||(35965148-35965210)
chr4 (458-502)||(34024609-34024654)
[»] chr5 (22 HSPs)
chr5 (422-502)||(30371550-30371631)
chr5 (422-502)||(34881536-34881617)
chr5 (427-494)||(42579708-42579776)
chr5 (422-502)||(27267033-27267114)
chr5 (430-502)||(36344662-36344735)
chr5 (435-502)||(19259983-19260051)
chr5 (427-502)||(26578080-26578156)
chr5 (435-502)||(11767645-11767714)
chr5 (430-496)||(7241616-7241683)
chr5 (430-496)||(7246792-7246859)
chr5 (421-502)||(18677639-18677721)
chr5 (422-502)||(7887110-7887191)
chr5 (422-502)||(27751740-27751821)
chr5 (430-494)||(41184625-41184690)
chr5 (430-494)||(3271588-3271652)
chr5 (427-502)||(21060454-21060530)
chr5 (427-502)||(35676248-35676324)
chr5 (427-502)||(43261990-43262066)
chr5 (444-502)||(16981138-16981197)
chr5 (427-502)||(781220-781296)
chr5 (430-494)||(4953914-4953981)
chr5 (427-502)||(7150508-7150584)
[»] scaffold0608 (1 HSPs)
scaffold0608 (424-502)||(67-146)
[»] scaffold0495 (1 HSPs)
scaffold0495 (441-502)||(5241-5302)
[»] scaffold0231 (1 HSPs)
scaffold0231 (422-476)||(25686-25740)
[»] scaffold0311 (1 HSPs)
scaffold0311 (442-491)||(8563-8613)


Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 11 - 502
Target Start/End: Original strand, 3724598 - 3725089
Alignment:
Q  11 atgaagaagattctaaagttggaagataaggatccagtgggacctggtggaatgagatagtccacgtggaaaaaggtggtagtgccgtgaagagtaattc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3724598 atgaagaagattctaaagttggaagataaggatccagtgggacctggtggaatgaaatagtccacgtggaaaaaggtggtagtgccgtgaagagtaattc 3724697  T
Q  111 tcggtggaaattggatagttcgaatatctggttgtcatggacgtcggcaaggacaatgaaatgatgagaatagcagtaattctagtttttgttgtttgtg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3724698 tcggtggaaattggatagttcgaatatctggttgtcatggacgtcggcaaggacaatgaaatgatgagaatagcagtaattctagtttttgttgtttgtg 3724797  T
Q  211 atgccataaatacttgagtgaaaattcaatttctccttccaaattgtgagtctaagatcatctctannnnnnncactaaagttttcggtttgagaatata 310  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||| ||||||||    
T  3724798 atgccataaatacttcagtgaaaattcaatttctccttccaaattgtgagtctaagatcatctctatttttttcactaaagttttcagttt-agaatata 3724896  T
Q  311 aatataatgtgatatttggttggagtcagatcaattatttaatgttaagataagatgtacagtcgtcattatatgtatttggaagattgatcttcccctt 410  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||  | |||    
T  3724897 aatataatgtgatatttggtgggagtcagatcaattatttaatgttaagataagatgtatagtcgttattatatgtatttggaagattgacctctctctt 3724996  T
Q  411 tccaataaaatggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    | ||| |||  | ||||| |||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||    
T  3724997 ttcaacaaagcgaccataattttctctttttaagttttctcttacaatttctttattgaggggtggttttgggtcaatttttgacctaaaatc 3725089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 9986596 - 9986520
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||    
T  9986596 tagttttctctctctaggttttctcttacagtttcttcattgaggggtggttttgggtcaattcttgacctgaaatc 9986520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 27249400 - 27249324
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattg-agggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||    
T  27249400 tagttttctctctctaggttttctcttacaatttcttcattgaagggtggttttgggtcaatacttgacctgaaatc 27249324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 45128040 - 45128112
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||    
T  45128040 ttttctctctctaggttttctcttcccatttcttcattgagggtggttttgggtcaattcttgacctgaaatc 45128112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 430 - 502
Target Start/End: Complemental strand, 8971874 - 8971801
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||| |||||    
T  8971874 ttttctctctttaggttttttcttacagtttcttcattgaggggtggttttgggtcaattcttgacctgaaatc 8971801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 40660182 - 40660102
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||| ||||| |||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||    
T  40660182 ggccctagttttctctttttagattttctcttagagtttcttcattgagggtggttttgagtcaattcttgacctgaaatc 40660102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 36233832 - 36233913
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| ||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |||||    
T  36233832 ggccctagttttctctctctagattttctcttgcaatttcttcattgaggggtggttttgggtcaattcatgacctgaaatc 36233913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 3270477 - 3270401
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||| ||||| || |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  3270477 tagttttttctctctaagttttctcttacgatttcttcattgaggggtggttttgggtcaattcttgacctgaaatc 3270401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 427 - 494
Target Start/End: Complemental strand, 41713014 - 41712946
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgac 494  Q
    ||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  41713014 tagttttctctatctaggttttctcttacaatttcttcattgaggggtggttttgggttaattcttgac 41712946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 33229242 - 33229161
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattg-agggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| |||||| |||||| |||||||||||||||  ||||||||||| |||||||||||||||||||| |||| ||||||||    
T  33229242 ggccctagtttcctctctctaggttttctcttactgtttcttcattgaagggtggttttgggtcaattattgagctaaaatc 33229161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 40626281 - 40626200
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||||||||||||||||| || |||||| ||||| ||||| ||||||||| ||||||||||| |||||    
T  40626281 ggccctagttttctctctttaggttttctcttccattttcttaattgaggggtgattttgggtctattcttgacctgaaatc 40626200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 445 - 502
Target Start/End: Complemental strand, 7015941 - 7015883
Alignment:
Q  445 ttttctcttacaatttcttcattgagggt-ggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  7015941 ttttctcttacaatttcttcattgggggttggttttgggtcaattcttgacctgaaatc 7015883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 20047335 - 20047254
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcatt-gagggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||| |||||||||| |||||||||||||||  |||||||||| | |||| ||||||| |||||||||||||| |||||    
T  20047335 ggccataattttctctctctaggttttctcttaccgtttcttcattggggggtagttttggatcaattcttgacctgaaatc 20047254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 21570662 - 21570581
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattgag-ggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||| ||| ||||||||||||| ||  || ||||||||| |||||||||||||||||||||||||| |||||    
T  21570662 ggccctagttttctgtctctaggttttctcttccagatttttcattgagtggtggttttgggtcaattcttgacctgaaatc 21570581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 30420504 - 30420585
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| |||| |||||||| |||||||| | |||||||||||||||||| |||||||||||| |||||| ||||||| |||||    
T  30420504 ggccctagtcttctctctctaggtttttttttacaatttcttcattgaggggtggttttggatcaatttttgacctgaaatc 30420585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 34598822 - 34598895
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| |||||||||||||||  ||||||| |||| |||||||||||| |||||||||||||| |||||    
T  34598822 ttttctctctctaggttttctcttaccgtttcttcgttgaggggtggttttggatcaattcttgacctcaaatc 34598895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 427 - 502
Target Start/End: Original strand, 6173464 - 6173540
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| |||||||||| ||||  |||||||||||| |||||||||| |||| ||||||||||| |||||    
T  6173464 tagttttctctctctaggttttcttttacggtttcttcattgaggggtggttttcggtctattcttgacctgaaatc 6173540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 502
Target Start/End: Complemental strand, 459510 - 459447
Alignment:
Q  440 ttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||||| || ||||||||||||||| |||||||||||||||| ||||||| |||||    
T  459510 ttaggttttctcttccagtttcttcattgaggggtggttttgggtcaatttttgacctgaaatc 459447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 502
Target Start/End: Complemental strand, 32680826 - 32680755
Alignment:
Q  431 tttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||| ||||||||||||| |  ||||||||||| |||||||||| |||| ||||||||||| |||||    
T  32680826 tttctctctctaggttttctcttcccgtttcttcattgggggtggttttcggtcgattcttgacctgaaatc 32680755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 502
Target Start/End: Complemental strand, 2808705 - 2808643
Alignment:
Q  441 taggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||| |||| || ||||||||||||||| |||||||||||||||||||||||| |||||    
T  2808705 taggttttttctttcattttcttcattgaggggtggttttgggtcaattcttgacctgaaatc 2808643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 489
Target Start/End: Complemental strand, 31581948 - 31581888
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattc 489  Q
    |||| ||||| |||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  31581948 ttttttctctctaggttttctcttactgtttcttcattgaggggtggttttgggtcaattc 31581888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 485
Target Start/End: Original strand, 10248005 - 10248056
Alignment:
Q  435 tctctttaggttttctcttacaatttcttcattga-gggtggttttgggtca 485  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  10248005 tctctttaggttttctctttcaatttctttattgaggggtggttttgggtca 10248056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 502
Target Start/End: Original strand, 25086868 - 25086942
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||||  |||||||||||| |  |||||||||| |||| |||||||||||||||| ||||||| |||||    
T  25086868 tagttttctctct--aggttttctcttccggtttcttcatttaggggtggttttgggtcaattattgacctgaaatc 25086942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 502
Target Start/End: Original strand, 17319158 - 17319233
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||| ||||| |||||||||||||  | ||| |||| ||||| ||| |||||||||||| ||||||| |||||    
T  17319158 tagttttttctctctaggttttctcttcgagttttttcaatgaggatggatttgggtcaatttttgacctgaaatc 17319233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 39642113 - 39642032
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattgagg-gtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||| ||||||||| |||| ||||  || |||||| |||||| |||| ||||| |||||| ||||||| |||||    
T  39642113 ggccatagttttttctctttagattttttcttttaacttcttcgttgaggagtggctttggatcaatttttgacctgaaatc 39642032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 40646515 - 40646596
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40646515 ggccctagttttctctctctaggttttctcttacaatttcttcattgaggggtggttttgggtcaattcttgacctaaaatc 40646596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 19716150 - 19716069
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattgag-ggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  19716150 ggccctagttttctctctttaggttttttcttacaatttcttcattgagaggtggttttgggtcaattcttgatctgaaatc 19716069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 433 - 502
Target Start/End: Complemental strand, 40881256 - 40881186
Alignment:
Q  433 tctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||| |||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||    
T  40881256 tctctctctaggttttctcttaccgtttcttcattgagggatggttttgggtcaattcttgacctaaaatc 40881186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 35584870 - 35584794
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| |||||    
T  35584870 tagttttctttctctaggttttctcttacaatttcttcattgaggggtgattttgggtcaattcttaacctgaaatc 35584794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 51871700 - 51871772
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| |||||||||||||    ||||||||||| |||||||||||||||||||||||||||||||||    
T  51871700 ttttctctctctaggttttctcttctcgtttcttcattgggggtggttttgggtcaattcttgacctaaaatc 51871772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 444 - 502
Target Start/End: Complemental strand, 50272372 - 50272313
Alignment:
Q  444 gttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  50272372 gttttctcttacaatttcttcattgaagggtggttttgggtcaattcttgacctgaaatc 50272313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 424 - 501
Target Start/End: Complemental strand, 50166350 - 50166273
Alignment:
Q  424 ccatagttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaat 501  Q
    ||||| |||||||||| ||||||||||||| |  ||||||||||| ||||||||||||||||||| ||||||| ||||    
T  50166350 ccataattttctctctctaggttttctcttcccgtttcttcattgggggtggttttgggtcaattattgacctgaaat 50166273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 427 - 490
Target Start/End: Original strand, 50148204 - 50148268
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattct 490  Q
    ||||||||||||| ||| |||||||||| |||||||||||||| |||||||||||||||||||||    
T  50148204 tagttttctctctctagattttctcttataatttcttcattgaggggtggttttgggtcaattct 50148268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 427 - 494
Target Start/End: Original strand, 19723166 - 19723233
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgac 494  Q
    ||||||| | ||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  19723166 tagttttttttctctaggttttctcttatagtttcttcattgagggtggttttgggtcaattattgac 19723233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 5701084 - 5701165
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| || |||||||||||||||||||| ||||| |||||  ||||||||||| |||||||| |||||    
T  5701084 ggccctagttttctctctctaagttttctcttacaatttctttattgaggggtgactttgggtcaatacttgacctgaaatc 5701165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 30878924 - 30878977
Alignment:
Q  444 gttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacct 496  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  30878924 gttttctcttacaatttcttcattgaggggtggttttgggtcaatttttgacct 30878977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 430 - 502
Target Start/End: Complemental strand, 51868891 - 51868818
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcatt-gagggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||||||||||||||| |  |||||||||| | |||||||||||||| |||||||||||| |||||    
T  51868891 ttttctctctttaggttttctcttcccgtttcttcattggggggtggttttgggttaattcttgacctgaaatc 51868818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 445 - 502
Target Start/End: Original strand, 20266151 - 20266210
Alignment:
Q  445 ttttctcttacaatttcttcattgaggg--tggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||||||||||||| |||||  ||||||||||||||||||||| ||||||||    
T  20266151 ttttctcttacaatttcttcatcgagggggtggttttgggtcaattcttgatctaaaatc 20266210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 502
Target Start/End: Complemental strand, 25728187 - 25728132
Alignment:
Q  448 tctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||    
T  25728187 tctcttacaatttcttcaatgacgggtggttttgggtcaattcttgacctgaaatc 25728132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 7342557 - 7342630
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| ||||||||||||| |  ||||||||||| ||| |||||||||||||||| ||||||| |||||    
T  7342557 ttttctctctctaggttttctcttcccgtttcttcattggggggtggttttgggtcaatttttgacctgaaatc 7342630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 31836693 - 31836738
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcatt 467  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||    
T  31836693 ggccctagttttctctctctaggttttctcttacaatttcttcatt 31836738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 33291673 - 33291592
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||| ||| ||| |||| ||||| | ||| ||||||||||| |||||||||||||||||||||||| |||||    
T  33291673 ggccctagttttctttctctagattttttcttatagttttttcattgaggggtggttttgggtcaattcttgacctgaaatc 33291592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 494
Target Start/End: Complemental strand, 18569551 - 18569491
Alignment:
Q  435 tctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgac 494  Q
    ||||| ||||||||||||| || |||||||||||| ||||||||||||||||||| |||||    
T  18569551 tctctctaggttttctcttccagtttcttcattgaggggtggttttgggtcaatttttgac 18569491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 496
Target Start/End: Complemental strand, 5324803 - 5324736
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacct 496  Q
    |||||||||| ||| |||||||||  | ||||||||||||||| || |||||||||||||||||||||    
T  5324803 ttttctctctctagattttctcttcaagtttcttcattgagggatgattttgggtcaattcttgacct 5324736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 493
Target Start/End: Complemental strand, 45426310 - 45426244
Alignment:
Q  429 gttttctctctttaggttttctcttacaatttcttcattgaggg--tggttttgggtcaattcttga 493  Q
    ||||| ||||| |||||||||| || || |||||||||||||||  |||||||||||||||||||||    
T  45426310 gttttttctctctaggttttcttttccagtttcttcattgagggggtggttttgggtcaattcttga 45426244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 502
Target Start/End: Complemental strand, 30818588 - 30818518
Alignment:
Q  433 tctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||| || ||||||| ||||| |||||||||||| |||| |||||||||||||| ||||||| |||||    
T  30818588 tctctctctaagttttcttttacagtttcttcattgaggggtagttttgggtcaattattgacctgaaatc 30818518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 9172323 - 9172396
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||  || |||||||| | | |||||||||||| ||| |||||||||||||||||||||||| |||||    
T  9172323 ttttctctcactaagttttctcatcccatttcttcattggggggtggttttgggtcaattcttgacctgaaatc 9172396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 9180305 - 9180378
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||  || |||||||| | | |||||||||||| ||| |||||||||||||||||||||||| |||||    
T  9180305 ttttctctcactaagttttctcatcccatttcttcattggggggtggttttgggtcaattcttgacctgaaatc 9180378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 48217475 - 48217520
Alignment:
Q  441 taggttttctcttacaatttcttcattgagggtggttttgggtcaa 486  Q
    |||||||||||||||| ||||||||| || ||||||||||||||||    
T  48217475 taggttttctcttacagtttcttcatcgatggtggttttgggtcaa 48217520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 494
Target Start/End: Original strand, 11453773 - 11453835
Alignment:
Q  433 tctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgac 494  Q
    ||||||| ||||||||||||| || ||||||||||||||| ||||||  |||||||| |||||    
T  11453773 tctctctctaggttttctctttcagtttcttcattgagggatggtttctggtcaatttttgac 11453835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 501
Target Start/End: Complemental strand, 7312316 - 7312272
Alignment:
Q  458 tttcttcattgaggg-tggttttgggtcaattcttgacctaaaat 501  Q
    ||||||||||||||| | |||||||||||||| ||||||||||||    
T  7312316 tttcttcattgaggggtagttttgggtcaatttttgacctaaaat 7312272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 25064058 - 25064139
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  25064058 ggccctagttttctctctctaggttttctcttacaatttcttcattgaggggtggttttgggtcaattcttgacctgaaatc 25064139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 427 - 502
Target Start/End: Original strand, 8496793 - 8496869
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||    
T  8496793 tagttttctctctctaggttttctcttacaatttcttcattgaggggtggttttgagtcaattcttgacctgaaatc 8496869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 12652763 - 12652844
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||||    
T  12652763 ggccctagttttctctctctaggttttctctcacagtttcttcattgaggggtggttttgggtcaattcttgacctgaaatc 12652844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 33109657 - 33109738
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||| |||||||||||||    
T  33109657 ggccctagttttctctttttaggttttctcttccagtttcttcattgacgggtggttttgggtcaatttttgacctaaaatc 33109738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 4984826 - 4984750
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||| |||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| |||||    
T  4984826 tagttttatctctttaggttttctcttacagtttctccattgaggggtggttttgggtcaattcttgacctgaaatc 4984750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 17334607 - 17334679
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| || |||||    
T  17334607 ttttctctctctagattttctcttacaatttcttcattgagggtggttttggatcgattcttgatctgaaatc 17334679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 23947566 - 23947490
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| |||||||| ||||  | ||||||||||||||| |||||||||||||||||||||||| |||||    
T  23947566 tagttttctctctctaggttttttcttctagtttcttcattgaggggtggttttgggtcaattcttgacctgaaatc 23947490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 433 - 502
Target Start/End: Complemental strand, 8196649 - 8196580
Alignment:
Q  433 tctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||| ||| ||||||  |||| |||||||||||||||||||||||| ||| ||||||||||||||||    
T  8196649 tctctctctagattttctggtacagtttcttcattgagggtggttttggatcagttcttgacctaaaatc 8196580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 502
Target Start/End: Original strand, 10228522 - 10228583
Alignment:
Q  441 taggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| |  ||||||||||| ||||||||||||||||||||||||||| |||||    
T  10228522 taggttttctcttcccgtttcttcattgggggtggttttgggtcaattcttgacctgaaatc 10228583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 502
Target Start/End: Complemental strand, 33740808 - 33740751
Alignment:
Q  446 tttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  33740808 tttctcttactgtttcttcattgaggggtggtttttggtcaattcttgacctaaaatc 33740751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 16418990 - 16419062
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| ||||||||||| | |  ||||||||||  ||||||||||| |||||||||| ||||||||||    
T  16418990 ttttctctctctaggttttctcatcccgtttcttcatttggggtggttttgagtcaattcttaacctaaaatc 16419062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 493
Target Start/End: Complemental strand, 8028363 - 8028300
Alignment:
Q  431 tttctctctttaggttttctcttacaatttcttcattgag-ggtggttttgggtcaattcttga 493  Q
    ||||||||||||||||||||  |||| ||||||||||||| |||| ||||||||||||| ||||    
T  8028363 tttctctctttaggttttctagtacagtttcttcattgagaggtgattttgggtcaattattga 8028300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 502
Target Start/End: Original strand, 4088301 - 4088363
Alignment:
Q  441 taggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| |||||  ||||| |||||||| |||||||||||||||||||||||| |||||    
T  4088301 taggttttcttttacaggttctttattgaggggtggttttgggtcaattcttgacctgaaatc 4088363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 502
Target Start/End: Complemental strand, 7876263 - 7876218
Alignment:
Q  458 tttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||||    
T  7876263 tttcttcattgaggggtggttttggatcaattattgacctaaaatc 7876218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 502
Target Start/End: Original strand, 12165676 - 12165745
Alignment:
Q  434 ctctctttaggttttctcttacaatttcttcattgagg-gtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||| | ||||||||||| || |||||||||||||| ||  ||||||||||||| ||||||| |||||    
T  12165676 ctctctctcggttttctcttccagtttcttcattgaggagttattttgggtcaattattgacctgaaatc 12165745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 427 - 496
Target Start/End: Complemental strand, 2843476 - 2843406
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattg-agggtggttttgggtcaattcttgacct 496  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2843476 tagttttctctctctaggttttctcttacaatttcttcattgaagggtggttttgggtcaattcttgacct 2843406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 430 - 502
Target Start/End: Complemental strand, 35496421 - 35496348
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||    
T  35496421 ttttctctctttaggttttctcttactgtttcttcattgaggggtggttttgggtcaattcttgacctaaaatc 35496348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 46821837 - 46821918
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||    
T  46821837 ggccctagttttctctctctaggttttctcttataattttttcattgaggggtggttttgggtcaattcttgacctgaaatc 46821918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 502
Target Start/End: Original strand, 32684519 - 32684589
Alignment:
Q  433 tctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||| |||||||||||||||  ||||||||||||||| |||||||||||||||||||||||| |||||    
T  32684519 tctctctctaggttttctcttacggtttcttcattgaggggtggttttgggtcaattcttgacctgaaatc 32684589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 6558755 - 6558815
Alignment:
Q  438 ctttaggttttctcttacaatttcttcattga--gggtggttttgggtcaattcttgacct 496  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||    
T  6558755 ctttaggttttctcttacaattttttcattgagggggtggttttgggtcaattcttgacct 6558815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 405 - 501
Target Start/End: Original strand, 26492171 - 26492268
Alignment:
Q  405 cccctttccaataaaatggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaat 501  Q
    ||||| ||||||||   |||| ||||||| ||||| ||| |||| ||||||| |||||||||||| ||||||||||||||||||||||||||| ||||    
T  26492171 cccctctccaataagccggccctagttttatctctctagattttgtcttacagtttcttcattgaggggtggttttgggtcaattcttgacctgaaat 26492268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 26583537 - 26583618
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||| | |||||||| ||||||| |||||||||||| |||||||||| |||||||||||||||| |||||    
T  26583537 ggccctagttttctctttctaggttttttcttacagtttcttcattgaggggtggtttttggtcaattcttgacctgaaatc 26583618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 42311111 - 42311184
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| |||||||||||||| | |||||||| |||||| |||||||||||||||||||||||| |||||    
T  42311111 ttttctctctctaggttttctcttagagtttcttcactgaggggtggttttgggtcaattcttgacctgaaatc 42311184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 12539204 - 12539128
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| ||| ||||||||| || |||||||||||| |||||||||| |||||||||||||||| |||||    
T  12539204 tagttttctctctctagattttctcttccagtttcttcattgaggggtggtttttggtcaattcttgacctgaaatc 12539128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 48207727 - 48207806
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||||||||||||||||||||||  |  || ||||| ||||||||||||||||| ||||||||||| |||||    
T  48207727 ggccatagttttctctctttaggttttctcttctagatttttcatcgagggtggttttgggtc-attcttgacctgaaatc 48207806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 444 - 501
Target Start/End: Original strand, 46338898 - 46338956
Alignment:
Q  444 gttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaat 501  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||    
T  46338898 gttttctcttacaatttcttcattgaggggtagttttgggtcaattcttgacctgaaat 46338956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 430 - 502
Target Start/End: Complemental strand, 22928116 - 22928043
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcatt-gagggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| ||||||||||||| |  |||||||||| | ||||||||||||||||||||||||||| |||||    
T  22928116 ttttctctctctaggttttctcttcccgtttcttcattagggggtggttttgggtcaattcttgacctgaaatc 22928043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 494
Target Start/End: Original strand, 21266215 - 21266288
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgac 494  Q
    |||| |||||||||||||||| ||||| |||| || |||||| ||||| ||||||||||||||||||| |||||    
T  21266215 ggccctagttttctctctttaagttttttcttccagtttctttattgaggggtggttttgggtcaattattgac 21266288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 501
Target Start/End: Complemental strand, 1449083 - 1449003
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaat 501  Q
    |||| ||||||||||||| |||||||| |||| ||  |||||  ||||||| |||||||||||||||||||||||| ||||    
T  1449083 ggccctagttttctctctctaggttttttcttccagattctttgttgaggggtggttttgggtcaattcttgacctgaaat 1449003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 502
Target Start/End: Complemental strand, 1485497 - 1485429
Alignment:
Q  435 tctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    ||||| ||||||||||||| |  ||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  1485497 tctctctaggttttctcttcccgtttcttcattggggggtggttttgggttaattcttgacctaaaatc 1485429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 494
Target Start/End: Original strand, 23085353 - 23085416
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgac 494  Q
    |||||||||| ||||||||||||| |  ||||||||||| ||||||||||||||||||| |||||    
T  23085353 ttttctctctctaggttttctcttccg-tttcttcattgggggtggttttgggtcaattattgac 23085416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 17499900 - 17499819
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||| ||||||||| |||||||||  | |||||||||||| |||| |||||||||||||  || ||||||||||    
T  17499900 ggccttagttttttctctttagattttctcttctagtttcttcattgaggggtagttttgggtcaatatttaacctaaaatc 17499819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 17553314 - 17553395
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||| ||||||||| |||||||||  | |||||||||||| |||| |||||||||||||  || ||||||||||    
T  17553314 ggccttagttttttctctttagattttctcttctagtttcttcattgaggggtagttttgggtcaatatttaacctaaaatc 17553395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 20116406 - 20116487
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| || ||||||||||  | |||||||| ||| |||| |||||||||||||| ||||||| |||||    
T  20116406 ggccctagttttctctctctatgttttctcttcaagtttcttcaatgaggggtagttttgggtcaatttttgacctgaaatc 20116487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 35667484 - 35667404
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||| | |||| ||||||||||  ||||| ||||||||||| ||||||||| |||||||||||| |||||||    
T  35667484 ggccctagttttcttt-tttaagttttctcttctaattttttcattgaggggtggttttggatcaattcttgacttaaaatc 35667404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 502
Target Start/End: Complemental strand, 433936 - 433865
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||| ||| |||||||||||||    ||||||||||| ||||||||||||||||||| ||||||| |||||    
T  433936 ttttctttctctaggttttctcttctggtttcttcattg-gggtggttttgggtcaatttttgacctgaaatc 433865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 486
Target Start/End: Complemental strand, 45630089 - 45630030
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaa 486  Q
    ||||||||||||| || |||||||| || | ||| |||||||||||||||||||| ||||    
T  45630089 tagttttctctctctacgttttctcctagagtttattcattgagggtggttttggatcaa 45630030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 502
Target Start/End: Original strand, 6001856 - 6001925
Alignment:
Q  435 tctctttaggttttctcttacaatttcttcattga--gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||||||||| || |||||| |||||  ||||| |||||| |||||| ||||||| |||||    
T  6001856 tctctttaggttttctcttccattttctttattgaaggggtgattttggatcaatttttgacctgaaatc 6001925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 486
Target Start/End: Complemental strand, 14628134 - 14628069
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaa 486  Q
    |||| |||||||| |||| || ||||| ||||||| | |||||||||| |||||||||||||||||    
T  14628134 ggccctagttttcgctctctaagttttttcttacagtgtcttcattgaagggtggttttgggtcaa 14628069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 470 - 502
Target Start/End: Complemental strand, 23425576 - 23425544
Alignment:
Q  470 gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||||||||||||||||| |||||    
T  23425576 gggtggttttgggtcaattcttgacctgaaatc 23425544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 362048 - 361967
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||| |||||    
T  362048 ggccttagttttctctctttaggttttctcttacagtttcttcattgaggggtggttttgagtcaattcttgacctgaaatc 361967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 6170 - 6242
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||  ||||||||||||||||||||||    
T  6170 ttttctctctttaggttttctcttccagtttcttcattgagggtggtttcaggtcaattcttgacctaaaatc 6242  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 9619607 - 9619531
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  9619607 tagttttctctctctagattttctcttacaatttcttcattgaggggtggttttgggtcaattcttgacctgaaatc 9619531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 422 - 491
Target Start/End: Complemental strand, 9498855 - 9498785
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattctt 491  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9498855 ggccctagttttctctctctaggttttctcttacaatttcttcattgaggggtggttttgggtcaattctt 9498785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 14907173 - 14907097
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| || |||||| |||||||||||||| |||||    
T  14907173 tagttttctctctctaggttttctcttacaatttcttcattgagggatgattttggatcaattcttgacctgaaatc 14907097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 11725512 - 11725593
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| ||| ||||||||| || |||||||||||| ||||||||||||||||||||||||||| |||||    
T  11725512 ggccctagttttctctctctagattttctctttcagtttcttcattgaggggtggttttgggtcaattcttgacctgaaatc 11725593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 43890379 - 43890298
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| || ||||||| |||||    
T  43890379 ggccctagttttctctctctaggttttctcttacaatttcttcattgaggggtggttttggatcattttttgacctgaaatc 43890298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 44100186 - 44100105
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| ||||||||||||| |  |||||||||||| ||||||||||||||| |||||||||||||||||    
T  44100186 ggccctagttttctctctctaggttttctctttcggtttcttcattgaggggtggttttgggtcgattcttgacctaaaatc 44100105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 411 - 502
Target Start/End: Original strand, 11463991 - 11464083
Alignment:
Q  411 tccaataaaatggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||| || || || ||||||||||||  |||||||||||||||||||||||| | |||||||||| |||||||||||||||| |||||    
T  11463991 tccaataaactgaccctaattttctctctttgagttttctcttacaatttcttcattaaggggtggttttaggtcaattcttgacctgaaatc 11464083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 424 - 502
Target Start/End: Original strand, 17949079 - 17949158
Alignment:
Q  424 ccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||||||| |||||| ||||||||| |||||||||||| ||||| ||||||||||||| ||||||| |||||    
T  17949079 ccatagttttctctctctaggttgtctcttacagtttcttcattgatgggtgattttgggtcaattattgacctgaaatc 17949158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 444 - 501
Target Start/End: Original strand, 4808816 - 4808874
Alignment:
Q  444 gttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaat 501  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  4808816 gttttctcttacaatttcttcattgaggggtggttttgggtcaattcttgacctgaaat 4808874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 44577868 - 44577947
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||| |||||||||||||  ||||||||||||||  ||||||||||||||| |||||||||||||||| |||||||||||||    
T  44577868 ggccctagttttctctct--aggttttctcttactgtttcttcattgaggggtggttttgggtcaatttttgacctaaaatc 44577947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 445 - 496
Target Start/End: Original strand, 2655722 - 2655774
Alignment:
Q  445 ttttctcttacaatttcttcattgag-ggtggttttgggtcaattcttgacct 496  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2655722 ttttctcttacaatttcttcattgagcggtggttttgggtcaattcttgacct 2655774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 35580295 - 35580369
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcatt--gagggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| |||||||||||||| |||| |||||||||||||  ||||||||||||||||||||| ||||| |||||||    
T  35580295 ttttttctctttaggttttttcttccaatttcttcattgagagggtggttttgggtcaatttttgacataaaatc 35580369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 421 - 502
Target Start/End: Original strand, 11196721 - 11196803
Alignment:
Q  421 tggccatagttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    ||||| ||||||||||||| ||| |||||||||  | ||||||| ||||||| |||||||||||||||||||||||| |||||    
T  11196721 tggccctagttttctctctctagtttttctcttctagtttcttcgttgaggggtggttttgggtcaattcttgacctgaaatc 11196803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 430 - 499
Target Start/End: Original strand, 33895920 - 33895989
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaa 499  Q
    |||||||||| |||||||||||||    ||||||||||| |||||||||||||||||||||||| |||||    
T  33895920 ttttctctctctaggttttctcttcgcgtttcttcattgggggtggttttgggtcaattcttgatctaaa 33895989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 42448282 - 42448201
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| |||||||| ||||||| |||  ||||||| |||||||||||||| |||||||||||| |||||    
T  42448282 ggccctagttttctctctctaggttttgtcttacagttttgtcattgaggggtggttttgggttaattcttgacctgaaatc 42448201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 502
Target Start/End: Original strand, 34611657 - 34611715
Alignment:
Q  445 ttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||    
T  34611657 ttttctcttacagtttcttcatcgaggggtggttttgggtcaattcttgacctgaaatc 34611715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 447 - 502
Target Start/End: Original strand, 12173358 - 12173413
Alignment:
Q  447 ttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| ||||||||| ||||||||||||||||||| | ||||||| |||||    
T  12173358 ttctcttacattttcttcatcgagggtggttttgggtcaacttttgacctgaaatc 12173413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 447 - 502
Target Start/End: Original strand, 12417786 - 12417841
Alignment:
Q  447 ttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| ||||||||| ||||||||||||||||||| | ||||||| |||||    
T  12417786 ttctcttacattttcttcatcgagggtggttttgggtcaacttttgacctgaaatc 12417841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 32724739 - 32724661
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga--gggtggttttgggtc-aattcttgacctaaaatc 502  Q
    ||||||||||||| | |||||||||||||| ||||| ||||||  ||||||||||||||| |||| ||||||| |||||    
T  32724739 tagttttctctctctgggttttctcttacagtttctccattgagggggtggttttgggtcaaattattgacctgaaatc 32724661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 502
Target Start/End: Original strand, 28239675 - 28239744
Alignment:
Q  435 tctctttaggttttctcttacaatttcttcattga--gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||| ||||||||||||| || ||||||||||||  ||||| ||||||||||||| ||||||| |||||    
T  28239675 tctctctaggttttctcttccattttcttcattgagggggtgattttgggtcaatttttgacctgaaatc 28239744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 33342269 - 33342348
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||| |||||||||||||  ||||||| ||||  | ||||||||||||||| |||||||||||||||| || |||| |||||    
T  33342269 ggccctagttttctctct--aggttttttcttcgagtttcttcattgaggggtggttttgggtcaatttttaacctgaaatc 33342348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 494
Target Start/End: Complemental strand, 27747358 - 27747293
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgac 494  Q
    |||| ||||| ||||||||||||| ||| ||||||||| | |||| |||||||||||||| |||||    
T  27747358 ttttttctctctaggttttctcttccaacttcttcattaaggggtagttttgggtcaatttttgac 27747293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 25631776 - 25631700
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||    
T  25631776 tagttttctctctctaggttttctcttactatttcttcattgaggggtggttttgggtcaatttttgacctaaaatc 25631700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 422 - 501
Target Start/End: Original strand, 32607288 - 32607369
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga--gggtggttttgggtcaattcttgacctaaaat 501  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||    
T  32607288 ggccctagttttctctctctagattttctcttacaatttcttcattgagggggtggttttgggtcaattcttgacctgaaat 32607369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 4178385 - 4178466
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| |||||||| ||||||  ||||||||||||||| ||||||||||||||||||||||||||||||    
T  4178385 ggccctagttttctctctctaggttttttcttactgtttcttcattgaggggtggttttgggtcaattcttgacctaaaatc 4178466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 36905950 - 36906023
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||    
T  36905950 ttttctctctctaggttttctcttacaatttcttcattgatggatggttttgggtcaattcttgacctgaaatc 36906023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 427 - 502
Target Start/End: Original strand, 12115919 - 12115995
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| |||||    
T  12115919 tagttttctctctctaggttttcttttacaatttcttcattgaggggtggttttgagtcaattcttgacctgaaatc 12115995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 44907648 - 44907572
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||| |||||    
T  44907648 tagttttctctctctaggttttctcctacaatttcttctttgaggggtggttttgggtcaattcttgacctgaaatc 44907572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 51202503 - 51202422
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||| |||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||| |||||    
T  51202503 ggccttagttttttctctttaggttttctcttacagtttctttattgaggggtgattttgggtcaattcttgacctgaaatc 51202422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 38855285 - 38855210
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||||    
T  38855285 tagttttctctctctaggttttctcttactatttcttcattgaggggtggttttgggtc-attcttgaccgaaaatc 38855210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 39917645 - 39917569
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattgagg-gtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| ||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||| |||||    
T  39917645 tagttttctctctctaggttttcccttacagtttcttcactgaggagtggttttgggtcaattcttgacctgaaatc 39917569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 427 - 493
Target Start/End: Original strand, 25162262 - 25162329
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttga 493  Q
    ||||||||||||| |||||||||||||||| |||||||| ||| ||||||||||| ||||||||||||    
T  25162262 tagttttctctctctaggttttctcttacagtttcttcactgaggggtggttttgtgtcaattcttga 25162329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 4172387 - 4172468
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| ||| |||| ||||||  |||||||||||| |||||||||||||||||||||| || |||||||    
T  4172387 ggccctagttttctctctctagattttttcttactgtttcttcattgaggggtggttttgggtcaattcttaacataaaatc 4172468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 50611666 - 50611590
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||| |||||||| |||||||||||   ||||||||||||| | |||||||||||||||| |||||||||||||    
T  50611666 tagttttttctctttaagttttctcttattgtttcttcattgagagatggttttgggtcaattattgacctaaaatc 50611590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 444 - 502
Target Start/End: Original strand, 14464350 - 14464409
Alignment:
Q  444 gttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||| |||||    
T  14464350 gttttcttttacaattttttcattgaagggtggttttgggtcaattcttgacctgaaatc 14464409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 502
Target Start/End: Complemental strand, 49552470 - 49552396
Alignment:
Q  429 gttttctctctttaggtttt-ctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||||||||||| ||||| |  |||||||||||| ||||||||||||||||||||||||||| |||||    
T  49552470 gttttctctctttaggtttttctcttccg-tttcttcattgatgggtggttttgggtcaattcttgacctgaaatc 49552396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 502
Target Start/End: Complemental strand, 47980903 - 47980841
Alignment:
Q  441 taggttttctcttacaatttcttcattgag-ggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| || ||||||||||||| |||||||||||||||||| ||||||| |||||    
T  47980903 taggttttctcttgcagtttcttcattgagtggtggttttgggtcaatttttgacctgaaatc 47980841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 502
Target Start/End: Complemental strand, 47990190 - 47990128
Alignment:
Q  441 taggttttctcttacaatttcttcattgag-ggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| || ||||||||||||| |||||||||||||||||| ||||||| |||||    
T  47990190 taggttttctcttgcagtttcttcattgagtggtggttttgggtcaatttttgacctgaaatc 47990128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 502
Target Start/End: Complemental strand, 47999477 - 47999415
Alignment:
Q  441 taggttttctcttacaatttcttcattgag-ggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| || ||||||||||||| |||||||||||||||||| ||||||| |||||    
T  47999477 taggttttctcttgcagtttcttcattgagtggtggttttgggtcaatttttgacctgaaatc 47999415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 502
Target Start/End: Complemental strand, 48008764 - 48008702
Alignment:
Q  441 taggttttctcttacaatttcttcattgag-ggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| || ||||||||||||| |||||||||||||||||| ||||||| |||||    
T  48008764 taggttttctcttgcagtttcttcattgagtggtggttttgggtcaatttttgacctgaaatc 48008702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 46934471 - 46934544
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| |||||||||||||  | |||||||||||| |||||||||| |||||||| ||||||| |||||    
T  46934471 ttttctctctctaggttttctcttctactttcttcattgaggggtggtttttggtcaatttttgacctgaaatc 46934544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 490
Target Start/End: Original strand, 2342332 - 2342382
Alignment:
Q  441 taggttttctcttacaatttcttcattga-gggtggttttgggtcaattct 490  Q
    |||||||||||||||| ||||||| |||| |||||||||||||||||||||    
T  2342332 taggttttctcttacagtttcttcgttgaggggtggttttgggtcaattct 2342382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 502
Target Start/End: Complemental strand, 3850695 - 3850628
Alignment:
Q  435 tctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||| || |||||||| | | ||||||| |||| |||||||||||| |||||||||||||| |||||    
T  3850695 tctctctaagttttctcatcccatttctttattgggggtggttttggatcaattcttgacctgaaatc 3850628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 9529132 - 9529051
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||| |||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| |||||    
T  9529132 ggccctagttttatctctttaggttttctcttacagtttcttcactgaggggtggttttgggtcaattcttgacctgaaatc 9529051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 427 - 502
Target Start/End: Original strand, 44947243 - 44947319
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| || ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||    
T  44947243 tagttttctctctctaagttttctcttacagtttcttcattgaggggtggttttgggtcaattcttgacctgaaatc 44947319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 421 - 494
Target Start/End: Complemental strand, 43154275 - 43154201
Alignment:
Q  421 tggccatagttttctctctttaggttttctcttacaatttcttcattgag-ggtggttttgggtcaattcttgac 494  Q
    ||||| |||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||    
T  43154275 tggccctagttttctctctttaggttttatcttacaatttatccattgagaggtggttttgggtcaattcttgac 43154201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 9283746 - 9283827
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||| ||| |||| |||||    
T  9283746 ggccctagttttctctctctaggttatctcttacaatttcttcattgaggggtggttttgggtcaatacttaacctgaaatc 9283827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 10390007 - 10389926
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||| | |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| |||||    
T  10390007 ggccctagttttctctttctaggttttctcttatagtttcttcattgaggggtggttttgggtcaattcttgacctgaaatc 10389926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 427 - 502
Target Start/End: Original strand, 1531746 - 1531822
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||| | |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |||||    
T  1531746 tagttttctctttctaggttttctcttacagtttcttcattgaggggtggtattgggtcaattcttgacctgaaatc 1531822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 424 - 502
Target Start/End: Original strand, 50179608 - 50179687
Alignment:
Q  424 ccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||||||| ||| |||||||||||| ||||| |||||| |||||||||||||||||||||| |||| |||||    
T  50179608 ccatagttttctctctctagcttttctcttacagtttctccattgaggggtggttttgggtcaattcttaacctgaaatc 50179687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 25273710 - 25273791
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| ||| |||||||||||| ||||| |||||| |||||||||||| |||||||||||||| |||||    
T  25273710 ggccctagttttctctctctagattttctcttacagtttctccattgaggggtggttttggatcaattcttgacctgaaatc 25273791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 43444228 - 43444309
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||| |||| || |||||    
T  43444228 ggccctagttttctctctctaggttttctcttacaattccttcattgaggggtagttttgggtcaatttttgatctgaaatc 43444309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 430 - 502
Target Start/End: Complemental strand, 53616897 - 53616824
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| |||||||||||||||||||||||| |||| |||||  |||||||||||||||||||| |||||    
T  53616897 ttttctctctctaggttttctcttacaatttcttcgttgaggggtgactttgggtcaattcttgacctgaaatc 53616824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 2115837 - 2115761
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| ||| |||| ||||||||||| |||||||| ||||||||||||||||||| ||||||| |||||    
T  2115837 tagttttctctctctagattttttcttacaatttattcattgaggggtggttttgggtcaattattgacctgaaatc 2115761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 50766765 - 50766682
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatt--tcttcattgag-ggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||| ||||| |||||||||||||||||||  ||||||||||| ||||||||||||||||||||||| || |||||    
T  50766765 ggccctagttttttctctctaggttttctcttacaatttctcttcattgagaggtggttttgggtcaattcttgatctgaaatc 50766682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 494
Target Start/End: Original strand, 867992 - 868065
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgac 494  Q
    |||| ||||||||||||| ||||||||||||| || |||||||||||| |||||||||| |||| |||||||||    
T  867992 ggccctagttttctctctctaggttttctcttccagtttcttcattgaggggtggttttaggtcgattcttgac 868065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 430 - 502
Target Start/End: Complemental strand, 31381917 - 31381844
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| ||| |||||||||||  ||||||| |||| ||||||||||||||||||||||||||| |||||    
T  31381917 ttttctctctctagattttctcttacggtttcttcgttgatgggtggttttgggtcaattcttgacctgaaatc 31381844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 38706957 - 38706883
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||||  ||||||| ||||||  ||||||||||||||| ||||||||||||||||||||| ||||||||    
T  38706957 tagttttctctct--aggttttttcttactgtttcttcattgaggggtggttttgggtcaattcttgatctaaaatc 38706883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 6972653 - 6972725
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| |||||||| |||| |  ||||||||||| |||||||||||||||||||||||| || |||||    
T  6972653 ttttctctctctaggttttttcttccggtttcttcattgggggtggttttgggtcaattcttgatctgaaatc 6972725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 427 - 502
Target Start/End: Original strand, 20569092 - 20569168
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| || |||||||| || || |||||||||||||| |||||||||||||||||||||| |||| |||||    
T  20569092 tagttttctccctctaggttttttcgtataatttcttcattgatgggtggttttgggtcaattcttaacctgaaatc 20569168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 9645803 - 9645728
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacct 496  Q
    |||| ||||||||| ||| |||| ||| ||||||| |||||||||||| |||| ||||||||||||||||||||||    
T  9645803 ggccctagttttctttctctaggctttatcttacagtttcttcattgaggggtcgttttgggtcaattcttgacct 9645728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 502
Target Start/End: Complemental strand, 10359817 - 10359719
Alignment:
Q  406 ccctttccaataaaatggccatagttttctctctttaggttttctcttacaatttcttcattga--gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||| || |||||| || |||| ||||| ||| ||||||||| || ||||||||||||  ||||||||||||||||||| ||||||| |||||    
T  10359817 ccctctccaacaagatggccttaattttttctctctagattttctctttcagtttcttcattgagggggtggttttgggtcaatttttgacctgaaatc 10359719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 502
Target Start/End: Complemental strand, 3338894 - 3338836
Alignment:
Q  445 ttttctcttacaatttcttcattgag-ggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||| || ||||||||||||| |||||||||||||||||| |||||||||||||    
T  3338894 ttttctcttccagtttcttcattgagaggtggttttgggtcaatttttgacctaaaatc 3338836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 411 - 487
Target Start/End: Original strand, 21089974 - 21090054
Alignment:
Q  411 tccaataaaatggcc--atagttttctctctttaggttttctcttacaatttcttcattga--gggtggttttgggtcaat 487  Q
    ||||||||| |||||  |||||||||||||| |||||||||||||  | ||||||||||||  ||||||||||||||||||    
T  21089974 tccaataaattggccctatagttttctctctctaggttttctcttctagtttcttcattgagggggtggttttgggtcaat 21090054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 494
Target Start/End: Original strand, 47416738 - 47416792
Alignment:
Q  441 taggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgac 494  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  47416738 taggttttctcttacaatttcttcattgaggggtgattttgggtcaattattgac 47416792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 4643691 - 4643772
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||| | |||||||||||||||| | |||||||||| |||||||||| ||| |||| ||||||| |||||    
T  4643691 ggccctagttttctctttctaggttttctcttacagtctcttcattgaggggtggttttaggtgaatttttgacctgaaatc 4643772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 472
Target Start/End: Original strand, 29965518 - 29965560
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgaggg 472  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  29965518 ttttctctctctaggttttctcttacaattttttcattgaggg 29965560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 501
Target Start/End: Original strand, 35261036 - 35261102
Alignment:
Q  435 tctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaat 501  Q
    ||||| |||||||||||||    ||||||||||||||||| ||||||||||||| ||||||| ||||    
T  35261036 tctctctaggttttctcttctcgtttcttcattgagggtgattttgggtcaatttttgacctgaaat 35261102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 487
Target Start/End: Complemental strand, 1931952 - 1931891
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattgag-ggtggttttgggtcaat 487  Q
    ||||||| |||||||||||||||||||  | ||||||||||||| |||||||| ||||||||    
T  1931952 tagttttttctctttaggttttctcttctagtttcttcattgagaggtggtttcgggtcaat 1931891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 37188846 - 37188765
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattgagg-gtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| |||||||||||||  |  || ||||| |||| ||||||||||||||||| ||||||| |||||    
T  37188846 ggccctagttttctctctctaggttttctcttctagatttttcatcgaggagtggttttgggtcaattattgacctgaaatc 37188765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 494
Target Start/End: Complemental strand, 5333774 - 5333711
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgac 494  Q
    |||| ||||| ||||||||||||| |  ||||||||||| ||||||||||||||||||| |||||    
T  5333774 ttttttctctctaggttttctcttcccgtttcttcattg-gggtggttttgggtcaatttttgac 5333711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 56194439 - 56194515
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgaggg----tggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||| ||||||||||| | |  |||||||||||||||    |||||||||||||||||||||||| |||||    
T  56194439 ttttttctctctaggttttctcatcccgtttcttcattgaggggtggtggttttgggtcaattcttgacctgaaatc 56194515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 502
Target Start/End: Complemental strand, 35965210 - 35965148
Alignment:
Q  441 taggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| ||  |||||||||||||| |||||||||||||||| || |||| |||||    
T  35965210 taggttttctcttccagattcttcattgaggggtggttttgggtcaattttttacctgaaatc 35965148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 502
Target Start/End: Complemental strand, 34024654 - 34024609
Alignment:
Q  458 tttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||||| ||||||||| |||||||||||||| |||||    
T  34024654 tttcttcattgaggggtggttttggatcaattcttgacctgaaatc 34024609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 30371550 - 30371631
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||| |||||    
T  30371550 ggccctagttttctctatctaggttttctcttacaatttcttcattgaggggtggttttgggtcaatatttgacctgaaatc 30371631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 34881536 - 34881617
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| |||||||||||||  ||||||||||||||| ||||| |||||| |||||||| |||||||||||||||||| |||||    
T  34881536 ggccctagttttctctctccaggttttctcttacagtttctccattgaggggtggttctgggtcaattcttgacctgaaatc 34881617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 427 - 494
Target Start/End: Original strand, 42579708 - 42579776
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgac 494  Q
    ||||||||||||| |||||||||||||||| ||||| |||||| ||||||||||||||||||| |||||    
T  42579708 tagttttctctctctaggttttctcttacagtttctccattgaggggtggttttgggtcaattattgac 42579776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 27267114 - 27267033
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||||| ||||||||||||| |  ||||||||  || ||||||||||||||||||||||||||| |||||    
T  27267114 ggccctagttttctctctctaggttttctcttcccgtttcttcaccgaagggtggttttgggtcaattcttgacctgaaatc 27267033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 430 - 502
Target Start/End: Complemental strand, 36344735 - 36344662
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||||||||||||||||    
T  36344735 ttttttctctctagattttctcttccaatttcttcattgaggggtggttttgagtcgattcttgacctaaaatc 36344662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 435 - 502
Target Start/End: Complemental strand, 19260051 - 19259983
Alignment:
Q  435 tctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    ||||| |||||||||||||||  ||||||| ||||||| |||||||||||||||||||||||| |||||    
T  19260051 tctctctaggttttctcttacggtttcttcgttgaggggtggttttgggtcaattcttgacctgaaatc 19259983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 427 - 502
Target Start/End: Original strand, 26578080 - 26578156
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||||  || ||||||||||||||||||| ||||| || ||||||| |||||||||||||||| |||||    
T  26578080 tagttttctctctccagattttctcttacaatttctttattgatggatggtttttggtcaattcttgacctgaaatc 26578156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 435 - 502
Target Start/End: Original strand, 11767645 - 11767714
Alignment:
Q  435 tctctttaggttttctcttacaa-tttcttcattgag-ggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||||||||| ||| ||||||||||| | ||||||||| |||||||| |||||||||||||    
T  11767645 tctctttaggttttctcttccaagtttcttcattgtgtggtggttttaggtcaatttttgacctaaaatc 11767714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 496
Target Start/End: Original strand, 7241616 - 7241683
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcatt-gagggtggttttgggtcaattcttgacct 496  Q
    |||||||||| ||||||||||||| |  |||||||||| | |||||||||||||||||||||| ||||    
T  7241616 ttttctctctctaggttttctcttcccgtttcttcattggggggtggttttgggtcaattcttaacct 7241683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 496
Target Start/End: Original strand, 7246792 - 7246859
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcatt-gagggtggttttgggtcaattcttgacct 496  Q
    |||||||||| ||||||||||||| |  |||||||||| | |||||||||||||||||||||| ||||    
T  7246792 ttttctctctctaggttttctcttcccgtttcttcattggggggtggttttgggtcaattcttaacct 7246859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 502
Target Start/End: Complemental strand, 18677721 - 18677639
Alignment:
Q  421 tggccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||| || ||||||| || |||||||||| ||||  |||||||||||| ||||||||||||||||||| |||| || |||||    
T  18677721 tggccctaattttctccctctaggttttcttttaccgtttcttcattgaggggtggttttgggtcaattattgatctgaaatc 18677639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 7887191 - 7887110
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||| ||||||||||| | ||  ||||||||| || ||||||||| ||||| |||||||||||| ||||||||||| |||||    
T  7887191 ggccctagttttctctttctaacttttctcttccagtttcttcatcgaggggtggttttgggtccattcttgacctgaaatc 7887110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 27751740 - 27751821
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgacctaaaatc 502  Q
    |||| |||||||| |||| |||||||||||||   | || | ||||||||| |||||||||||||||||||||||| |||||    
T  27751740 ggccctagttttccctctataggttttctcttcttaattttccattgaggggtggttttgggtcaattcttgacctgaaatc 27751821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 430 - 494
Target Start/End: Complemental strand, 41184690 - 41184625
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgaggg-tggttttgggtcaattcttgac 494  Q
    |||||| ||| |||||||||||||||| ||||| ||||||||| || ||||||||||||| |||||    
T  41184690 ttttctttctctaggttttctcttacagtttctccattgagggatgattttgggtcaatttttgac 41184625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 494
Target Start/End: Complemental strand, 3271652 - 3271588
Alignment:
Q  430 ttttctctctttaggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgac 494  Q
    |||||||||| ||  |||| ||||| | ||||||||||||||||| |||| ||||||||||||||    
T  3271652 ttttctctctctaaattttttcttatagtttcttcattgagggtgattttaggtcaattcttgac 3271588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 21060530 - 21060454
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattgag-ggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| |||||||||||||  |  || ||||| ||| ||||||||||||||||||||||| || |||||    
T  21060530 tagttttctctctctaggttttctcttctagatttttcatcgagtggtggttttgggtcaattcttgatctgaaatc 21060454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 35676324 - 35676248
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| |   |||||||||||  |||||||||||| |||||||||||| |||||| || ||||||||||    
T  35676324 tagttttctctctctgaattttctcttactgtttcttcattgaagggtggttttggatcaatttttaacctaaaatc 35676248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 43262066 - 43261990
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcattgag-ggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| ||||||||| ||  |||||| ||||||||| |||| ||||| |||||||||| |||| |||||    
T  43262066 tagttttctctctctaggttttcactatcaattttttcattgagaggtgattttgagtcaattcttaacctgaaatc 43261990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 502
Target Start/End: Original strand, 16981138 - 16981197
Alignment:
Q  444 gttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||| || |||||||||||| ||||||| |||| |||||||||||||| |||||    
T  16981138 gttttctcttccattttcttcattgaggggtggtattggatcaattcttgacctgaaatc 16981197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 502
Target Start/End: Original strand, 781220 - 781296
Alignment:
Q  427 tagttttctctctttaggtttt---ctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||||||||||||   || ||| | ||||  ||| |||||||||||||| |||||||||||||| |||||    
T  781220 tagttttctctctttaggtttttttcttttagattttc--catcgagggtggttttggttcaattcttgacctgaaatc 781296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 494
Target Start/End: Original strand, 4953914 - 4953981
Alignment:
Q  430 ttttctctctttaggttttct---cttacaatttcttcattgagggtggttttgggtcaattcttgac 494  Q
    |||||||||| ||||||||||   ||| |  ||| ||||||| |||||||||||||||||||||||||    
T  4953914 ttttctctctctaggttttcttctctttccgttttttcattgggggtggttttgggtcaattcttgac 4953981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 7150584 - 7150508
Alignment:
Q  427 tagttttctctctttaggttttctcttacaatttcttcatt-gagggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| ||||||||||||| |  |||||||||| | || ||||||||| | |||| ||||||| |||||    
T  7150584 tagttttctctctctaggttttctcttcccgtttcttcattcggggatggttttggattaatttttgacctgaaatc 7150508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 424 - 502
Target Start/End: Original strand, 67 - 146
Alignment:
Q  424 ccatagttttctctctttaggttttctcttacaatttcttcattga-gggtggttttgggtcaattcttgacctaaaatc 502  Q
    |||||||||||||||| ||| |||||||||||| ||||| |||||| |||||||||||||||||||||| |||| |||||    
T  67 ccatagttttctctctctagcttttctcttacagtttctccattgaggggtggttttgggtcaattcttaacctgaaatc 146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 502
Target Start/End: Original strand, 5241 - 5302
Alignment:
Q  441 taggttttctcttacaatttcttcattgagggtggttttgggtcaattcttgacctaaaatc 502  Q
    ||||||||||||| |  ||||||||||| ||||||||||||||||||||||||||| |||||    
T  5241 taggttttctcttcccgtttcttcattgggggtggttttgggtcaattcttgacctgaaatc 5302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 476
Target Start/End: Original strand, 25686 - 25740
Alignment:
Q  422 ggccatagttttctctctttaggttttctcttacaatttcttcattgagggtggt 476  Q
    |||| ||||||||| ||| || | |||||||||||||||||||||||||||||||    
T  25686 ggccgtagttttctttctctatgatttctcttacaatttcttcattgagggtggt 25740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 491
Target Start/End: Original strand, 8563 - 8613
Alignment:
Q  442 aggttttctcttacaatttcttcattga-gggtggttttgggtcaattctt 491  Q
    |||||||||||| || |||||||||||| |||||||||||||| |||||||    
T  8563 aggttttctcttccagtttcttcattgaggggtggttttgggttaattctt 8613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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