View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16281_high_13 (Length: 402)

Name: NF16281_high_13
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16281_high_13
NF16281_high_13
[»] chr3 (6 HSPs)
chr3 (20-327)||(35278718-35279024)
chr3 (223-257)||(39389306-39389340)
chr3 (223-257)||(39389495-39389529)
chr3 (350-387)||(35279047-35279084)
chr3 (215-257)||(32775743-32775785)
chr3 (220-257)||(48308090-48308127)
[»] chr7 (1 HSPs)
chr7 (208-251)||(20601860-20601902)
[»] chr8 (1 HSPs)
chr8 (207-257)||(38492951-38493000)
[»] chr5 (1 HSPs)
chr5 (221-257)||(26459136-26459172)
[»] chr1 (1 HSPs)
chr1 (207-251)||(10799261-10799304)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 35278718 - 35279024
Alignment:
Q  20 tttttactttgtagaactttagtagagtgtcaactgcaggacgaaaaggttagtctttcaaattattccgtgcttaaatcgagtattaaattaacattgt 119  Q
    |||||||||| |||| ||||||||| |  ||| | |  ||||| || ||||| |||||||||||| ||||| |||||||||| |||||||||||  || |    
T  35278718 tttttactttttagagctttagtaggggttcagccggtggacggaagggttactctttcaaattaatccgttcttaaatcgaatattaaattaatttttt 35278817  T
Q  120 ttagagagctacatatgataataaggttaagtagttcaactaatttgagctaagagatttgaacttgatgatcttgaattcaaaaccgatgaaggagtat 219  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35278818 ttagagatctacatatgataataaggttaagtagttcaactaatttgagctaagagatttgaagttgatgatcttgaattcaaaaccgatgaaggagtat 35278917  T
Q  220 aatattaatctaacaactaactattaacatttatcattnnnnnnnnggaaataatatataatggaagtctcaaattaatatttgatatgtatggagacct 319  Q
    |||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35278918 aatattaatctaacaattaactattaacatttatcatt-aaaaaaaggaaataatatataatggaagtctcaaattaatatttgatatgtatggagacct 35279016  T
Q  320 tgtcttta 327  Q
    ||||||||    
T  35279017 tgtcttta 35279024  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 39389306 - 39389340
Alignment:
Q  223 attaatctaacaactaactattaacatttatcatt 257  Q
    |||||||||||||||||||||||||||||||||||    
T  39389306 attaatctaacaactaactattaacatttatcatt 39389340  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 39389495 - 39389529
Alignment:
Q  223 attaatctaacaactaactattaacatttatcatt 257  Q
    |||||||||||||||||||||||||||||||||||    
T  39389495 attaatctaacaactaactattaacatttatcatt 39389529  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 35279047 - 35279084
Alignment:
Q  350 taacacacatgatcatgtccattgtgcataggcttgat 387  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  35279047 taacacacatgatcatgtccattgtacataggcttgat 35279084  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 32775743 - 32775785
Alignment:
Q  215 agtataatattaatctaacaactaactattaacatttatcatt 257  Q
    |||| ||||||||||||||||||||||| |||||||| |||||    
T  32775743 agtacaatattaatctaacaactaactaataacatttgtcatt 32775785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 48308127 - 48308090
Alignment:
Q  220 aatattaatctaacaactaactattaacatttatcatt 257  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  48308127 aatattaatctaacaactaactactaacatttgtcatt 48308090  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 20601860 - 20601902
Alignment:
Q  208 atgaaggagtataatattaatctaacaactaactattaacattt 251  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||    
T  20601860 atgaaggagta-aatattaatttaacaactaactattaacattt 20601902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 38493000 - 38492951
Alignment:
Q  207 gatgaaggagtataatattaatctaacaactaactattaacatttatcatt 257  Q
    |||||||||| |||| |||||||||||||||||| || |||||||||||||    
T  38493000 gatgaaggag-ataaaattaatctaacaactaaccatcaacatttatcatt 38492951  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 26459136 - 26459172
Alignment:
Q  221 atattaatctaacaactaactattaacatttatcatt 257  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  26459136 atattaatttaacaactaactattaatatttatcatt 26459172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 10799261 - 10799304
Alignment:
Q  207 gatgaaggagtataatattaatctaacaactaactattaacattt 251  Q
    |||||||||||| |||||||||||||||||||| || ||||||||    
T  10799261 gatgaaggagta-aatattaatctaacaactaattactaacattt 10799304  T

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