View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_high_15 (Length: 391)
Name: NF16281_high_15
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 282 - 374
Target Start/End: Original strand, 31826691 - 31826783
Alignment:
| Q |
282 |
tctgtttcttgttgcaaaggtaataagtaatttgtctctaaaaagaaacgcaaatttataatttgtcattagaggatgagtgatatatataag |
374 |
Q |
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| T |
31826691 |
tctgtttcttgttgcaaaggtaataagtaatttgtctctaaaaagaaacgcaaatttataatttgtcattagaggatgagtgatatatataag |
31826783 |
T |
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Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 126 - 284
Target Start/End: Original strand, 31826464 - 31826615
Alignment:
| Q |
126 |
attggaagttaagttacgaagttaattgattcccgtctaatgggaatgaagttttccacatt----tagcactcaggaataataaataatcctgatttat |
221 |
Q |
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| T |
31826464 |
attggaagttaagttacgaagtcaattgattcccgtctaatgggaatgaagttttccacatttagctagcactcaggaataataa-----------ttat |
31826552 |
T |
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| Q |
222 |
ggaagaagnnnnnnnccactattgggtataatttgtttgtggtaaaagttttttcaatcctct |
284 |
Q |
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| T |
31826553 |
ggaagaagaaaaaaactactattgggtataatttgtttgtggtaaaagttttttcaatcctct |
31826615 |
T |
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