View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_high_16 (Length: 390)
Name: NF16281_high_16
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 21298462 - 21298090
Alignment:
| Q |
18 |
aggatgtttacgtcgctggtcctcttgttcaatgcttcatgaacatttcttgttttttgcctggaaatgtttccccttcaattcctgttcgcccgggatg |
117 |
Q |
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| T |
21298462 |
aggatgtttacgtccctggtcctcttgttcaatgcttcaagaacatttcttgttttttgcctggaaatgtttccccttcaattcctgctcgcccgggatg |
21298363 |
T |
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| Q |
118 |
gagtcatgaccgccactaccgtctccaaaaccaccttaccactcatcttcctcacatatatttatttgcttctcgactcagatcgacttgcactgctgct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
21298362 |
gagtcatgaccgccactaccgtctccaaaaccacctcaccactcatcttcctcacatatatttatttgcttctcgacttagatcgtcttgcactgctgct |
21298263 |
T |
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| Q |
218 |
actcgtgccaatgtgaccggatcatcattcaccactgatgttgacggccctaaatacttggccaccctattcagtcagccttgtgctcacaatgcaaatg |
317 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21298262 |
actcgtgccaatgtgaccggatcatcattcaccgctgatgttgacggccctaaatacttggccaccctattcagtcagccttgtgctcacaatgcaaatg |
21298163 |
T |
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| Q |
318 |
aaattgctaatctcactggccccggtgcctctcatgtttatgcaggaaatctcaaactttggcaagaagctgc |
390 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21298162 |
aatttgctaatctcactggccctggtgcctctcatgtttatgcaggaaatctcaaactttggcaaaaagctgc |
21298090 |
T |
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