View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16281_high_19 (Length: 362)

Name: NF16281_high_19
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16281_high_19
NF16281_high_19
[»] chr5 (6 HSPs)
chr5 (232-348)||(6301970-6302085)
chr5 (1-98)||(6301317-6301414)
chr5 (138-207)||(6301418-6301487)
chr5 (211-240)||(6301516-6301545)
chr5 (61-90)||(39205975-39206004)
chr5 (134-195)||(42469184-42469245)
[»] chr3 (1 HSPs)
chr3 (134-203)||(24205076-24205145)
[»] scaffold0168 (1 HSPs)
scaffold0168 (134-196)||(21005-21067)
[»] chr4 (3 HSPs)
chr4 (132-194)||(16402244-16402306)
chr4 (134-203)||(24343462-24343531)
chr4 (61-89)||(34200217-34200245)
[»] chr2 (2 HSPs)
chr2 (128-202)||(23354681-23354755)
chr2 (128-178)||(23355024-23355074)
[»] scaffold0007 (1 HSPs)
scaffold0007 (134-203)||(225303-225372)
[»] chr7 (1 HSPs)
chr7 (134-194)||(43249957-43250017)
[»] chr1 (1 HSPs)
chr1 (135-195)||(13011252-13011312)


Alignment Details
Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 232 - 348
Target Start/End: Original strand, 6301970 - 6302085
Alignment:
Q  232 ttatgcaaattattgtgtttggggctggggtgaacacaaataaatgtttgtggatattgcttcaccaacaccagtaactgtttcatagctgacagttcaa 331  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6301970 ttatgcaaattattgtgtt-ggggctggggtgaacacaaataactgtttgtggatattgcttcaccaacaccagtaactgtttcacagctgacagttcaa 6302068  T
Q  332 taaggaatgcaggttgt 348  Q
    |||||||||||||||||    
T  6302069 taaggaatgcaggttgt 6302085  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 6301317 - 6301414
Alignment:
Q  1 atttatgccatattatagcctttggtcattattcaaagtagacactgtgtgtataataaactatgaagcatagacactccttggattaaagatgtctc 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||  ||||||||    
T  6301317 atttatgccatattatagcctttggtcattattcaaagtagacacagtgtgtataataaactatgaagcatagacacttcttggattagggatgtctc 6301414  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 6301418 - 6301487
Alignment:
Q  138 tctcaaattattatccgtgtcagcatatcagtgtgcgtgtcgcattcggtgtccgtgtttgtgtccatgc 207  Q
    |||||||||||||||| |||||||||||| ||||| |||| |||||||||||||||||||||||||||||    
T  6301418 tctcaaattattatccatgtcagcatatcggtgtgtgtgttgcattcggtgtccgtgtttgtgtccatgc 6301487  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 240
Target Start/End: Original strand, 6301516 - 6301545
Alignment:
Q  211 ttatttgtagagaaaatgtaattatgcaaa 240  Q
    ||||||||||||||||||||||||||||||    
T  6301516 ttatttgtagagaaaatgtaattatgcaaa 6301545  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 39206004 - 39205975
Alignment:
Q  61 ctatgaagcatagacactccttggattaaa 90  Q
    ||||||||||||||||||||||||||||||    
T  39206004 ctatgaagcatagacactccttggattaaa 39205975  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 42469245 - 42469184
Alignment:
Q  134 attttctcaaattattatccgtgtcagcatatcagtgtgcgtgtcgcattcggtgtccgtgt 195  Q
    ||||||||||||||||||||||||| || | ||| | | |||||||  ||||||||||||||    
T  42469245 attttctcaaattattatccgtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgt 42469184  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 24205076 - 24205145
Alignment:
Q  134 attttctcaaattattatccgtgtcagcatatcagtgtgcgtgtcgcattcggtgtccgtgtttgtgtcc 203  Q
    ||||||||||||||||||||||||| || | ||||||| |||||||  | |||||||||||| |||||||    
T  24205076 attttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtcc 24205145  T

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Target: scaffold0168 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 21067 - 21005
Alignment:
Q  134 attttctcaaattattatccgtgtcagcatatcagtgtgcgtgtcgcattcggtgtccgtgtt 196  Q
    ||||||||||||||||| |||||||||||| ||||||| |||||||  |  ||||||||||||    
T  21067 attttctcaaattattaaccgtgtcagcatgtcagtgtccgtgtcgtgtctggtgtccgtgtt 21005  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 16402244 - 16402306
Alignment:
Q  132 ttattttctcaaattattatccgtgtcagcatatcagtgtgcgtgtcgcattcggtgtccgtg 194  Q
    ||||||||||||||||||||||||||| |||| ||||||| | |||||  | |||||||||||    
T  16402244 ttattttctcaaattattatccgtgtcggcatgtcagtgttcatgtcgtgtgcggtgtccgtg 16402306  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 24343531 - 24343462
Alignment:
Q  134 attttctcaaattattatccgtgtcagcatatcagtgtgcgtgtcgcattcggtgtccgtgtttgtgtcc 203  Q
    ||||||||||||||||||||||||| || | || | || |||||||  | |||||||||||| |||||||    
T  24343531 attttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgtgtctgtgtcc 24343462  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 89
Target Start/End: Original strand, 34200217 - 34200245
Alignment:
Q  61 ctatgaagcatagacactccttggattaa 89  Q
    |||||||||||||||||||||||||||||    
T  34200217 ctatgaagcatagacactccttggattaa 34200245  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 23354681 - 23354755
Alignment:
Q  128 tatattattttctcaaattattatccgtgtcagcatatcagtgtgcgtgtcgcattcggtgtccgtgtttgtgtc 202  Q
    ||||| ||||||||||||||||||| |||||||||| || |||| ||||||   | ||||||||||||| |||||    
T  23354681 tatatcattttctcaaattattatctgtgtcagcatgtcggtgtccgtgtcatgtccggtgtccgtgttcgtgtc 23354755  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 23355024 - 23355074
Alignment:
Q  128 tatattattttctcaaattattatccgtgtcagcatatcagtgtgcgtgtc 178  Q
    ||||| ||||||||||||||||||| |||||||||| || |||| ||||||    
T  23355024 tatatcattttctcaaattattatctgtgtcagcatgtcggtgtccgtgtc 23355074  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 225303 - 225372
Alignment:
Q  134 attttctcaaattattatccgtgtcagcatatcagtgtgcgtgtcgcattcggtgtccgtgtttgtgtcc 203  Q
    ||||||||||||||||||| ||||| || | ||||||| |||||||  | |||||||||||| |||||||    
T  225303 attttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtcc 225372  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 43250017 - 43249957
Alignment:
Q  134 attttctcaaattattatccgtgtcagcatatcagtgtgcgtgtcgcattcggtgtccgtg 194  Q
    ||||||||||||||||||||||||| || | ||||||| ||||||   | |||||||||||    
T  43250017 attttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtccggtgtccgtg 43249957  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 13011252 - 13011312
Alignment:
Q  135 ttttctcaaattattatccgtgtcagcatatcagtgtgcgtgtcgcattcggtgtccgtgt 195  Q
    |||| ||||||||||| | ||||| |||| ||||||| |||||||  ||||||||||||||    
T  13011252 ttttttcaaattattagctgtgtcggcatgtcagtgttcgtgtcgtgttcggtgtccgtgt 13011312  T

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