View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_high_2 (Length: 810)
Name: NF16281_high_2
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_high_2 |
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| [»] scaffold0400 (1 HSPs) |
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| [»] scaffold0365 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 647; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 19 - 795
Target Start/End: Original strand, 5213806 - 5214581
Alignment:
| Q |
19 |
catgggacataggccaattgtccctctgcaatgtcatgtgcacgggaaagcatctcaggcacaatggacaacaaccagggccgaattttgtagtttttca |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5213806 |
catgggacataggccaattgtccctctgcagtgtcatgtgcacgggaaagcatctcgggcacaatggacaacaaccagggccgaattttgtagtttttca |
5213905 |
T |
|
| Q |
119 |
ttcgttctttgaatgctcttcttccttgaaatgccttaagacttgggataaaatttctccaacttgtattgtcttcaaaaccttctaaaaccttcgtaaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5213906 |
ttcgttctttgaatgctcttcttccttgaaatgccttaagacttgagacaaaatttctccaacttgtattgtcttcaaaagcttctaaaaccttcgtaaa |
5214005 |
T |
|
| Q |
219 |
tcttcattctttaacttacatcagatgtattgttttgctgaattacatgatttattaataaaaagactcaacacatatggagttgtctgattaaaaaaga |
318 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5214006 |
tcttcattctttaacttacatcagatatattgttttgctgaattacatgatttatcaataaaaagactcaacacatatggagttgtctggttaaaaaaga |
5214105 |
T |
|
| Q |
319 |
aattgaattacaatgactcaaaccaaaacaacacnnnnnnn----tccctcaaaccatgaacaactcatctgcaactcccctaatttatcctcaaatgat |
414 |
Q |
| |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5214106 |
aattgaattacaacgactcaaaccaaaacaacacaaaaaaaaaaatccctcaaaccatgaacaactcatctgaaactcccctaatttatcctcaaatgat |
5214205 |
T |
|
| Q |
415 |
tattcaaatgactcaaaaacattgctaaaatattatatgatatgatataatatagtgccatcaaatagtagtgtaggatcctatttcaactaaattgaat |
514 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5214206 |
tattcaaatgactcaaaaacattactaaaatattatat-----gatataatatagtgtcatcaaatagtagtgtagggtcctatttcaactaaattgaat |
5214300 |
T |
|
| Q |
515 |
tgaacatttcattatcatgaagaaacatggtaatccgttgaaataatttccaacgggctataattgtttttggtacttggcatgttggagctagatgttg |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5214301 |
tgaacatttcattatcatgaagaaacatggtaatccgttgaaataattttcaacgggctataattgtttttggtacttggcatgttggagctagatgttg |
5214400 |
T |
|
| Q |
615 |
attggcattttctcatcaatgaggtgtcaaaatctatgattggattttacctaaccaataatgtcatttttgtctaacttcaaattgataattagccaaa |
714 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5214401 |
attggcattttcttatcaatgaggtgtcaaaatctatgattggattttacctaaccaataatgtcatttttgtctagcttcaaattgataattagccaaa |
5214500 |
T |
|
| Q |
715 |
aaattattcacatggacatgtttcattgctagcatcacaggcgataaatatttgcttccccgacctcggtagcgtcctttg |
795 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
5214501 |
aaattattcacatggacatgtttcattactagcatcacaggcgataattatttgcttccccgaccttggtagcgtcctttg |
5214581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 8308989 - 8309041
Alignment:
| Q |
242 |
gatgtattgttttgctgaattacatgatttattaataaaaagactcaacacat |
294 |
Q |
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||||| |||||||||||| ||||||||||| ||| ||||||||||||| |||| |
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| T |
8308989 |
gatgtcttgttttgctgatttacatgatttcttactaaaaagactcaaaacat |
8309041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 256 - 337
Target Start/End: Complemental strand, 20044321 - 20044238
Alignment:
| Q |
256 |
ctgaattacatgatttattaataaaaagactcaaca--catatggagttgtctgattaaaaaagaaattgaattacaatgactc |
337 |
Q |
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| T |
20044321 |
ctgaattacatgatttttcaataaaaagactcaaaatacatatggagttgcatgattaaggaagaaattgaattacaatgactc |
20044238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 32022056 - 32021998
Alignment:
| Q |
143 |
cttgaaatgccttaagacttgggataaaatttctccaacttgtattgtcttcaaaacctt |
202 |
Q |
| |
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||||||||||||| | | ||||||| || |||| |||||||||||||||||||||||||| |
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| T |
32022056 |
cttgaaatgccttgaaatttgggatgaa-tttccccaacttgtattgtcttcaaaacctt |
32021998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 13275704 - 13275749
Alignment:
| Q |
244 |
tgtattgttttgctgaattacatgatttattaataaaaagactcaa |
289 |
Q |
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||||||| ||||| ||||||||||||||| ||||||||||||||| |
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| T |
13275704 |
tgtattgctttgccgaattacatgatttagcaataaaaagactcaa |
13275749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 26297904 - 26297809
Alignment:
| Q |
242 |
gatgtattgttttgctgaattacatgatttattaataaaaagactcaacacatatggagttgtctgattaaaaaagaaattgaattacaatgactc |
337 |
Q |
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||||| ||||||||| || ||||||||||||| | |||| |||||||||||||||| ||||| ||||| | | |||||||||||||| ||||| |
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| T |
26297904 |
gatgtcttgttttgccgatttacatgatttatcactaaatagactcaacacatatgaagttgcatgatttaggataaaattgaattacaacgactc |
26297809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 15850883 - 15850940
Alignment:
| Q |
147 |
aaatgccttaagacttgggataaaatttctccaacttgtattgtcttcaaaaccttct |
204 |
Q |
| |
|
||||||||| | | ||||||| || |||||| |||||||||||||||||||||||||| |
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|
| T |
15850883 |
aaatgccttgaaatttgggatgaattttctcaaacttgtattgtcttcaaaaccttct |
15850940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 1174075 - 1173996
Alignment:
| Q |
230 |
taacttacatcagatgtattgttttgctgaattacatgatttattaataaaaagactcaa--cacatatggagttgtctg |
307 |
Q |
| |
|
|||||| ||| |||| | ||| ||||| ||| |||||||||||||||||||||||||||| ||| |||| ||||||||| |
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|
| T |
1174075 |
taacttccatgagatattttgctttgccgaagtacatgatttattaataaaaagactcaaagcacctatgaagttgtctg |
1173996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 34935186 - 34935241
Alignment:
| Q |
143 |
cttgaaatgccttaagacttgggataaaatttctccaacttgtattgtcttcaaaa |
198 |
Q |
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|||||||||||||| ||||||||| || |||| |||||||||||| ||||||||| |
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| T |
34935186 |
cttgaaatgccttagaacttgggatgaattttccccaacttgtattatcttcaaaa |
34935241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 20977084 - 20977016
Alignment:
| Q |
161 |
ttgggataaaatttctccaacttgtattgtcttcaaaaccttctaaaaccttcgtaaatcttcattctt |
229 |
Q |
| |
|
|||||| |||||||| |||| ||||||||| ||||| ||||||||||| ||| || |||||||||||| |
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|
| T |
20977084 |
ttgggacaaaatttccccaaattgtattgtattcaacaccttctaaaagctttgtcgatcttcattctt |
20977016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 39526853 - 39526912
Alignment:
| Q |
153 |
cttaagacttgggataaaatttctccaacttgtattgtcttcaaaaccttctaaaacctt |
212 |
Q |
| |
|
|||| |||||| || | ||||||||||||||| | |||||||||| |||||||||||||| |
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|
| T |
39526853 |
cttaggacttgagacataatttctccaacttgcaatgtcttcaaagccttctaaaacctt |
39526912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 30831126 - 30831176
Alignment:
| Q |
153 |
cttaagacttgggataaaatttctccaacttgtattgtcttcaaaaccttc |
203 |
Q |
| |
|
|||| ||||||||| || |||||| |||||||| ||||||||||||||||| |
|
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| T |
30831126 |
cttaggacttgggacaacatttcttcaacttgttttgtcttcaaaaccttc |
30831176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 3349 - 3401
Alignment:
| Q |
177 |
ccaacttgtattgtcttcaaaaccttctaaaaccttcgtaaatcttcattcttt |
230 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |
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|
| T |
3349 |
ccaacttgtattgtcttcaaagccttccaaaacc-tcgttgatcttcattcttt |
3401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 3993 - 4045
Alignment:
| Q |
177 |
ccaacttgtattgtcttcaaaaccttctaaaaccttcgtaaatcttcattcttt |
230 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |
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| T |
3993 |
ccaacttgtattgtcttcaaagccttccaaaacc-tcgttgatcttcattcttt |
4045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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