View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_high_20 (Length: 357)
Name: NF16281_high_20
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 2150651 - 2150324
Alignment:
| Q |
12 |
tattctcgacatttgaggtgtagtccttaccgaatatggcaaagaaacaaatgcaaacagacaatataaattgaaattgttgtgctagagtaatgaatgc |
111 |
Q |
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| T |
2150651 |
tattctcgacatttgaggtgtagtccttaccgaatatggcaaagaaacaaatgcaaacagacaatataaattgaaattgttgtgctagagtaatgaatgc |
2150552 |
T |
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| Q |
112 |
aaaaaagtcataacaatgctaagaaagtgacatataaaatattaaatatggaagcgtgagacccgcaagcaaaatgatgcaaaggcattgcaacttgcaa |
211 |
Q |
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| T |
2150551 |
aaaaaagtcataacaatgctaagaaagtgacatataaaatattaaatatggaggcgtgagacccgcaagcaaaatgatgcaaaggcattgcaacttgcaa |
2150452 |
T |
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| Q |
212 |
gttgcaactgggtcactcaaattatatgtttgatatcataataagcatgttaccacggttatccatcgtaattttgcagaagttaatggtcatcatgttt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
2150451 |
gttgcaactgggtcactcaaattatatgtttgatatcatgatatgcatgtaaccacggtcatccatcgtaattttgcagaagttaatggtcatcatg-tt |
2150353 |
T |
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| Q |
312 |
ctgatatccatcatgataataaatgtaga |
340 |
Q |
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||| ||| ||||||||||||||||||||| |
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| T |
2150352 |
ctggtattcatcatgataataaatgtaga |
2150324 |
T |
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