View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_high_21 (Length: 354)
Name: NF16281_high_21
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 11988307 - 11987989
Alignment:
| Q |
19 |
atccattttggtaacgtgtaacaggtttgtcaagtccaatcctaggataccaannnnnnnn--atttaagtgttattaaggttataacaacgatcccacc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
11988307 |
atccattttggtaacgtgtaacaggtttgtcaagtccaatcctaggatacccatttttttttaatttaagtgttattaaggttataacaacgatcccacc |
11988208 |
T |
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| Q |
117 |
catcactgtatgnnnnnnnnnnnnnnnnngacttgatttgattttatgaatggttatttttaccacatcgaaacctnnnnnnnntgaaaatccaacaaac |
216 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11988207 |
catcactgtatgaaaaaaaaaaaa------acttgatttgattttatgaatggttatttttaccacatcgaaacctaaaaaaaatgaaaatccaacaaac |
11988114 |
T |
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| Q |
217 |
aaatccaaacccccaatctatgaaattggatttaatccaacacataagccagcaaaacaaaacaattccagtccaatacataaacagaactaggaacata |
316 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11988113 |
aaatccaaactcccaatctatgaaattggatttaatccaacgcataagccagcaaaacaaaacaattccagtccaatacataaacagaactaggaacata |
11988014 |
T |
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| Q |
317 |
ataaagaggattcatgtgtacagta |
341 |
Q |
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||||||||||||||||||||||||| |
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| T |
11988013 |
ataaagaggattcatgtgtacagta |
11987989 |
T |
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