View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16281_high_28 (Length: 281)

Name: NF16281_high_28
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16281_high_28
NF16281_high_28
[»] chr7 (9 HSPs)
chr7 (92-269)||(6057066-6057243)
chr7 (92-269)||(17199214-17199400)
chr7 (92-258)||(23962613-23962790)
chr7 (186-267)||(46867678-46867759)
chr7 (92-265)||(31913771-31913958)
chr7 (92-199)||(46867566-46867673)
chr7 (199-266)||(23168384-23168452)
chr7 (202-258)||(46812343-46812400)
chr7 (202-261)||(2167777-2167837)
[»] chr1 (3 HSPs)
chr1 (92-267)||(43868905-43869080)
chr1 (194-231)||(51122234-51122271)
chr1 (92-201)||(51544490-51544601)
[»] chr3 (6 HSPs)
chr3 (92-267)||(5126103-5126281)
chr3 (92-267)||(5133287-5133465)
chr3 (92-267)||(41623953-41624125)
chr3 (193-269)||(54092985-54093061)
chr3 (107-197)||(54093077-54093169)
chr3 (192-242)||(26449048-26449098)
[»] chr4 (8 HSPs)
chr4 (92-264)||(50131870-50132042)
chr4 (92-269)||(44972692-44972869)
chr4 (104-264)||(50131456-50131616)
chr4 (189-267)||(26296641-26296719)
chr4 (194-267)||(27382418-27382491)
chr4 (192-242)||(25993825-25993875)
chr4 (187-266)||(10542812-10542892)
chr4 (92-201)||(37480687-37480798)
[»] chr2 (9 HSPs)
chr2 (92-267)||(14000099-14000274)
chr2 (192-267)||(4416714-4416789)
chr2 (192-263)||(40097851-40097922)
chr2 (201-268)||(62577-62644)
chr2 (192-242)||(11315099-11315149)
chr2 (186-267)||(862055-862136)
chr2 (192-242)||(10716646-10716696)
chr2 (197-262)||(20941030-20941096)
chr2 (105-171)||(4416605-4416673)
[»] chr6 (3 HSPs)
chr6 (192-267)||(25171858-25171933)
chr6 (96-191)||(25171740-25171837)
chr6 (92-201)||(11164155-11164266)
[»] chr8 (5 HSPs)
chr8 (92-258)||(15145399-15145576)
chr8 (192-258)||(9184695-9184762)
chr8 (92-201)||(37801821-37801932)
chr8 (92-201)||(44526974-44527085)
chr8 (197-258)||(11721521-11721583)
[»] scaffold0204 (1 HSPs)
scaffold0204 (92-267)||(30109-30295)
[»] scaffold0129 (1 HSPs)
scaffold0129 (186-267)||(4758-4839)
[»] chr5 (2 HSPs)
chr5 (194-231)||(27349482-27349519)
chr5 (202-247)||(35395643-35395688)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 92 - 269
Target Start/End: Complemental strand, 6057243 - 6057066
Alignment:
Q  92 acatgactgaatagaaaacgaacaggaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgat 191  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6057243 acatgactgaatagaaaacgaacaagaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgat 6057144  T
Q  192 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaatg 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6057143 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactaaaatgtgaggatggaaatg 6057066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 92 - 269
Target Start/End: Complemental strand, 17199400 - 17199214
Alignment:
Q  92 acatgactgaatagaaaacgaacaggaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgat 191  Q
    ||||||||||||| |||||||||| ||||||| ||||||| ||||||||||| ||||||| |||||| ||||||||||||||| ||||||| || |||||    
T  17199400 acatgactgaataaaaaacgaacatgaggcgtaaccttaagaaacgacgaaatcttctgttaaaacagaatcttttgcaatgttcctcgccgtaaatgat 17199301  T
Q  192 gatgat---------gaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaatg 269  Q
    ||||||         |||||||||||||||||||||||   |||||||||||| ||||||||||||||||| |||||||||||||||    
T  17199300 gatgatgaagatgatgaaggttttagcgggaaggagaataatcagggacgtgtttgatgttctgactgaaaggtgaggatggaaatg 17199214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 258
Target Start/End: Complemental strand, 23962790 - 23962613
Alignment:
Q  92 acatgactgaatagaaaacgaacagga--ggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatg 189  Q
    |||||||||||| ||||||||||||||  | ||||||||||  ||| ||||||| ||||| |||||||  |||||||||||| || |||||||  |||||    
T  23962790 acatgactgaatggaaaacgaacaggaacgacgttaccttatgaaatgacgaaatcttctatcaaaactgaatcttttgcaacgttcctcgccggagatg 23962691  T
Q  190 at---------gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtga 258  Q
    ||         ||||||||||| ||||||||||||||||| ||||||||| || | ||||||| || |||||||||||    
T  23962690 atgttgatgaagatgatgaagggtttagcgggaaggagaatggtcagggatgtttttgatgttatggctgaaatgtga 23962613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 46867678 - 46867759
Alignment:
Q  186 gatgatgatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaa 267  Q
    ||||| ||||||||||||||| |||||||||||||  |||||| |||||| |||||||||||| ||||||||||||||||||    
T  46867678 gatgaagatgatgaaggttttcgcgggaaggagaatagtcaggaacgtgtttgatgttctgaccgaaatgtgaggatggaaa 46867759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 92 - 265
Target Start/End: Complemental strand, 31913958 - 31913771
Alignment:
Q  92 acatgactgaatagaaaacgaacagga--ggcgtta---ccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatag 186  Q
    |||||||||||| ||||||||||||||  || ||||   |||||  ||| ||||||| ||||  ||||||   ||||||||||||||| |||||||| ||    
T  31913958 acatgactgaatggaaaacgaacaggaacggtgttattaccttacgaaatgacgaaatcttccatcaaaattgaatcttttgcaatgttcctcgccagag 31913859  T
Q  187 atgatgatgatgaag---------gttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatgga 265  Q
    |||||| ||||||||         |||||||||||||| ||||  ||||||||||||| |||||||||| || ||||||||| |||||    
T  31913858 atgatgttgatgaagatgatgaatgttttagcgggaagaagaacagtcagggacgtgtttgatgttctggctaaaatgtgagaatgga 31913771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 46867566 - 46867673
Alignment:
Q  92 acatgactgaatagaaaacgaacaggaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgat 191  Q
    ||||||| ||||| |||| | ||| |||| || ||||||| ||||||| ||| ||||||| ||||   ||||||||||||||| ||||||| ||||||||    
T  46867566 acatgacggaatacaaaatggacatgaggtgtaaccttaagaaacgacaaaatcttctgttaaaatggaatcttttgcaatgttcctcgccgtagatgat 46867665  T
Q  192 gatgatga 199  Q
    ||||||||    
T  46867666 gatgatga 46867673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 23168452 - 23168384
Alignment:
Q  199 aaggttttagcgggaaggagaaaggtcagggacgtgtatgatgt-tctgactgaaatgtgaggatggaa 266  Q
    ||||||||| ||||||||||||||||||  || |||| |||||| ||||| ||||||||||||||||||    
T  23168452 aaggttttaacgggaaggagaaaggtcaatgatgtgtttgatgtgtctgagtgaaatgtgaggatggaa 23168384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 46812343 - 46812400
Alignment:
Q  202 gttttagcgggaaggagaaaggtcagggacgtgtatgatg-ttctgactgaaatgtga 258  Q
    ||||||| ||||||||||||||||| || ||| | ||||| |||||||||||||||||    
T  46812343 gttttagtgggaaggagaaaggtcaaggtcgtttttgatgtttctgactgaaatgtga 46812400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 2167837 - 2167777
Alignment:
Q  202 gttttagcgggaaggagaaaggtcagggacgtgtatgatg-ttctgactgaaatgtgagga 261  Q
    ||||||||||||||||||| |||||  ||||| | ||||| |||||| |||||||||||||    
T  2167837 gttttagcgggaaggagaagggtcaaagacgtttttgatgtttctgattgaaatgtgagga 2167777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 92 - 267
Target Start/End: Complemental strand, 43869080 - 43868905
Alignment:
Q  92 acatgactgaatagaaaacgaacaggaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgat 191  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43869080 acatgactgaatagaaaacgaacaggaggcgttaccttaataaatgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgat 43868981  T
Q  192 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaa 267  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43868980 gatgatgaaggttttagcgggaaggagaaaggtcatggacgtgtatgatgttctgactgaaatgtgaggatggaaa 43868905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 51122271 - 51122234
Alignment:
Q  194 tgatgaaggttttagcgggaaggagaaaggtcagggac 231  Q
    |||||||||||||||||||||||||||||||| |||||    
T  51122271 tgatgaaggttttagcgggaaggagaaaggtcggggac 51122234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 51544601 - 51544490
Alignment:
Q  92 acatgactgaatagaaaacgaacagga--ggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatg 189  Q
    |||||| ||||| ||||| ||||||||  |||||||||||   ||| ||||||| ||| | ||||||| || |||||||||| || |||||||  |||||    
T  51544601 acatgattgaatggaaaatgaacaggaacggcgttaccttttgaaatgacgaaatcttatatcaaaactaattcttttgcaacgttcctcgccggagatg 51544502  T
Q  190 atgatgatgaag 201  Q
    ||| ||||||||    
T  51544501 atgttgatgaag 51544490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 92 - 267
Target Start/End: Complemental strand, 5126281 - 5126103
Alignment:
Q  92 acatgactgaatagaaaacgaacaggaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgat 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5126281 acatgactgaatagaaaacgaacaggaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgat 5126182  T
Q  192 gatg---atgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaa 267  Q
    ||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5126181 gatgatgatgaaggttttagtgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaa 5126103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 92 - 267
Target Start/End: Complemental strand, 5133465 - 5133287
Alignment:
Q  92 acatgactgaatagaaaacgaacaggaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgat 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5133465 acatgactgaatagaaaacgaacaggaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgat 5133366  T
Q  192 gatg---atgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaa 267  Q
    ||||   |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5133365 gatgatgatgaaggttttagcgggaaggagaaaggtcagggacatgtatgatgttctgactgaaatgtgaggatggaaa 5133287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 92 - 267
Target Start/End: Complemental strand, 41624125 - 41623953
Alignment:
Q  92 acatgactgaatagaaaacgaacaggaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgat 191  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||  ||||||||||||||| ||||||| ||||||||    
T  41624125 acatgactgaatagaaaaagaacaggaggcgttaccttaagaaacgacgaaatcgtctgtcaaaacggaatcttttgcaatgttcctcgccgtagatgat 41624026  T
Q  192 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaa 267  Q
    |   ||||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||||| ||||||||    
T  41624025 g---atgaaggttttagcgggaaggagaaaggtcatggacgtgtttgatgttatgattgaaatgtgatgatggaaa 41623953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 54093061 - 54092985
Alignment:
Q  193 atgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaatg 269  Q
    |||||||||||||||||||||||||||||||||| |||||| | | ||||| |||||||||||||||||||||||||    
T  54093061 atgatgaaggttttagcgggaaggagaaaggtcatggacgttttttatgttgtgactgaaatgtgaggatggaaatg 54092985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 54093169 - 54093077
Alignment:
Q  107 aaacgaacagga--ggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgatgatgat 197  Q
    ||||||||||||  | ||||||||||| ||||||| ||| ||| |||||||||| ||||||||| || || |||||||  |||||||||||||    
T  54093169 aaacgaacaggaatgacgttaccttaagaaacgacaaaatcttttgtcaaaacataatcttttggaaagttcctcgccggagatgatgatgat 54093077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 26449048 - 26449098
Alignment:
Q  192 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgt 242  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| ||||||    
T  26449048 gatggtgaaggttttagcggaaaggagaaaggtcaggaacgtgtttgatgt 26449098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 92 - 264
Target Start/End: Complemental strand, 50132042 - 50131870
Alignment:
Q  92 acatgactgaatagaaaacgaacaggaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgat 191  Q
    |||||| ||||||||||||||||| ||||||||| ||||| |||||| |||| |||| |||||||| |||||||||||||||| ||||||| |||||  |    
T  50132042 acatgattgaatagaaaacgaacatgaggcgttaacttaagaaacgatgaaatcttcagtcaaaacgaaatcttttgcaatgttcctcgccgtagatatt 50131943  T
Q  192 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatgg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  50131942 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtttgatgttctgaccgaaatgtgaggatgg 50131870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 92 - 269
Target Start/End: Complemental strand, 44972869 - 44972692
Alignment:
Q  92 acatgactgaatagaaaacgaacaggaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgat 191  Q
    |||||||||||||||||| ||||| ||||||||||||||| |||||||||||   | ||||| ||| |||||||||||||||| |||| || ||||||||    
T  44972869 acatgactgaatagaaaatgaacaagaggcgttaccttaagaaacgacgaaattgtatgtcataacgaaatcttttgcaatgttcctcaccgtagatgat 44972770  T
Q  192 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaatg 269  Q
    ||||||||||||||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  44972769 gatgatgaaggttttagcgagaagaagaaaggtcagagacgtgtttgatgttctgactgaaatgtgaggatggaaatg 44972692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 104 - 264
Target Start/End: Complemental strand, 50131616 - 50131456
Alignment:
Q  104 agaaaacgaacaggaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgatgatgatgaaggt 203  Q
    |||||||||||| ||||||||| ||||| ||||||||||| |||| ||||||||  ||||||||||||||| ||||||  |||||  |||||||||||||    
T  50131616 agaaaacgaacatgaggcgttaacttaagaaacgacgaaatcttcagtcaaaacggaatcttttgcaatgttcctcgctgtagatattgatgatgaaggt 50131517  T
Q  204 tttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatgg 264  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  50131516 tttagcgggaaggagaaaggtcagggacgtgtttgatgttttgactgaaatgtgaggatgg 50131456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 26296641 - 26296719
Alignment:
Q  189 gatgatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaa 267  Q
    |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  26296641 gatgatgatgaaggttttagcgggaaagataaaggtcagggacgtgtttgatgttctgactgaaatgtgaggattgaaa 26296719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 27382491 - 27382418
Alignment:
Q  194 tgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaa 267  Q
    |||||||||||||||||||||||||||||||||||||||| | || |||||| |||||||||||||||||||||    
T  27382491 tgatgaaggttttagcgggaaggagaaaggtcagggacgtttttgttgttctaactgaaatgtgaggatggaaa 27382418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 25993875 - 25993825
Alignment:
Q  192 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgt 242  Q
    |||| |||||||||| ||||||||||||||||| |||||||||| ||||||    
T  25993875 gatggtgaaggttttggcgggaaggagaaaggttagggacgtgtttgatgt 25993825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 10542892 - 10542812
Alignment:
Q  187 atgatgatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatg-ttctgactgaaatgtgaggatggaa 266  Q
    |||| ||||||||||||||||||| |||||||||   || |||||  || ||||| |||||| | ||||||||||||||||    
T  10542892 atgaagatgatgaaggttttagcgagaaggagaagattcggggaccggtttgatgtttctgaattaaatgtgaggatggaa 10542812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 37480687 - 37480798
Alignment:
Q  92 acatgactgaatagaaaacgaacagga--ggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatg 189  Q
    |||||| ||||| ||||||||||||||  |||||||||||   ||| ||||||| ||||| | |||||  | |||||||||| || |||||||  |||||    
T  37480687 acatgattgaatggaaaacgaacaggaacggcgttaccttttgaaatgacgaaatcttctattaaaactgattcttttgcaacgttcctcgccggagatg 37480786  T
Q  190 atgatgatgaag 201  Q
    ||| || |||||    
T  37480787 atgctggtgaag 37480798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 92 - 267
Target Start/End: Complemental strand, 14000274 - 14000099
Alignment:
Q  92 acatgactgaatagaaaacgaacaggaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgat 191  Q
    |||||||||||||||||||||||||   |||||||||||| ||||||| ||| | |||||||||||  ||||||||||||||| ||||||| |||||||     
T  14000274 acatgactgaatagaaaacgaacagattgcgttaccttaagaaacgacaaaatcgtctgtcaaaacggaatcttttgcaatgttcctcgccgtagatgaa 14000175  T
Q  192 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaa 267  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||    
T  14000174 gatgatgaaggttttaacgggaaggagaaaggtcaggggcgtgtttgatgttctgaatgaaatgtgaggatggaaa 14000099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 4416714 - 4416789
Alignment:
Q  192 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaa 267  Q
    ||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||||| |||||||||||||||||    
T  4416714 gatgatgaaggatttagcggaaaggagaaaggtcagggacgtttttgatgttctgactaaaatgtgaggatggaaa 4416789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 40097922 - 40097851
Alignment:
Q  192 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatg 263  Q
    ||||||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||    
T  40097922 gatgatgaaggttctagcgggaaggagaaaggtcagggacatgtttgatgttatgactaaaatgtgaggatg 40097851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 62577 - 62644
Alignment:
Q  201 ggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaat 268  Q
    |||||||||||||||||||||| |||||||||| | | ||||||| |||||||||||||||| |||||    
T  62577 ggttttagcgggaaggagaaagatcagggacgttttttatgttctaactgaaatgtgaggatagaaat 62644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 11315099 - 11315149
Alignment:
Q  192 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgt 242  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  11315099 gatgatgaaggttttagcaggaaggagaaaggtcagggacgtgtttgatgt 11315149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 862055 - 862136
Alignment:
Q  186 gatgatgatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaa 267  Q
    ||||| ||||||||||| ||||||||||||||||| |||||| || || | |||||||||| |||||| ||||  |||||||    
T  862055 gatgaagatgatgaagggtttagcgggaaggagaacggtcagagatgtttttgatgttctggctgaaacgtgatcatggaaa 862136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 10716646 - 10716696
Alignment:
Q  192 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgt 242  Q
    |||||||||| ||||||| |||||||||||||||| |||||||| ||||||    
T  10716646 gatgatgaagattttagcaggaaggagaaaggtcaaggacgtgtttgatgt 10716696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 20941096 - 20941030
Alignment:
Q  197 tgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgt-tctgactgaaatgtgaggat 262  Q
    ||||||||||||||| ||||||||  ||||| ||| ||| |||||| ||||| ||||||||||||||    
T  20941096 tgaaggttttagcggaaaggagaagagtcagagacttgtttgatgtgtctgagtgaaatgtgaggat 20941030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 4416605 - 4416673
Alignment:
Q  105 gaaaacgaacagga--ggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaa 171  Q
    ||||||||||||||  | ||||||||||| ||||||| ||| ||| |||||||||  ||||||||||||    
T  4416605 gaaaacgaacaggaacgacgttaccttaagaaacgacaaaatcttttgtcaaaacggaatcttttgcaa 4416673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 25171858 - 25171933
Alignment:
Q  192 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaa 267  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  25171858 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtttttgaggttctgactgaaatgtgaggatggaaa 25171933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 25171740 - 25171837
Alignment:
Q  96 gactgaatagaaaacgaacagga--ggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatgat 191  Q
    |||| ||| ||||||||||||||  ||||||||||||| |||||| |||| ||| |||||||||  ||||||||||||||| ||| |||  |||||||    
T  25171740 gacttaatggaaaacgaacaggaacggcgttaccttaagaaacgatgaaatcttgtgtcaaaacggaatcttttgcaatgttccttgccggagatgat 25171837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 11164266 - 11164155
Alignment:
Q  92 acatgactgaatagaaaacgaacagga--ggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatg 189  Q
    |||||| ||||| ||||||||||||||  | |||||||||   ||| ||||||| ||||| |||||||  | |||||||||| || |||||||  |||||    
T  11164266 acatgattgaatggaaaacgaacaggaacgacgttaccttttgaaatgacgaaatcttctatcaaaactgactcttttgcaacgttcctcgccggagatg 11164167  T
Q  190 atgatgatgaag 201  Q
    ||| ||||||||    
T  11164166 atgctgatgaag 11164155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 92 - 258
Target Start/End: Original strand, 15145399 - 15145576
Alignment:
Q  92 acatgactgaatagaaaacgaacagga--ggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatg 189  Q
    |||||||||| | ||||||||||||||  | ||||||||||  ||| || |||| ||||| |||||||  |||||||||||| || |||||||  |||||    
T  15145399 acatgactgattggaaaacgaacaggaatgacgttaccttatgaaatgatgaaatcttctatcaaaactgaatcttttgcaacgttcctcgccggagatg 15145498  T
Q  190 atgatgatgaaggt---------tttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtga 258  Q
    ||| |||||||| |         ||||||||||||||||| ||||||||| || | |||||||||| |||||||||||    
T  15145499 atgctgatgaagatgatgaatggtttagcgggaaggagaacggtcagggatgtttttgatgttctggctgaaatgtga 15145576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 9184762 - 9184695
Alignment:
Q  192 gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgt-tctgactgaaatgtga 258  Q
    ||||||||||||||||||||||||||||||| ||| |||||| | |||||| ||||| ||||||||||    
T  9184762 gatgatgaaggttttagcgggaaggagaaagatcatggacgtatttgatgtgtctgagtgaaatgtga 9184695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 37801932 - 37801821
Alignment:
Q  92 acatgactgaatagaaaacgaacagga--ggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatg 189  Q
    |||||| ||||| ||||||||||||||  | |||||||||   ||| ||||||| ||||| ||||||| || |||||||||| || |||||||  |||||    
T  37801932 acatgattgaatggaaaacgaacaggaacgacgttaccttttgaaatgacgaaatcttctatcaaaactaattcttttgcaacgttcctcgccggagatg 37801833  T
Q  190 atgatgatgaag 201  Q
    ||| ||||||||    
T  37801832 atgttgatgaag 37801821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 44527085 - 44526974
Alignment:
Q  92 acatgactgaatagaaaacgaacaggag--gcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatg 189  Q
    |||||| ||||| ||||||||||||||   ||||||||||   ||||||||||| ||||| |||||||  | |||||||||| || |||||||  |||||    
T  44527085 acatgattgaatggaaaacgaacaggaacagcgttaccttttgaaacgacgaaatcttctatcaaaactgattcttttgcaacgttcctcgccggagatg 44526986  T
Q  190 atgatgatgaag 201  Q
    ||| ||||||||    
T  44526985 atgctgatgaag 44526974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 11721521 - 11721583
Alignment:
Q  197 tgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgt-tctgactgaaatgtga 258  Q
    |||||||||||||||||||||||||| |||||||||| | |||||| || || ||||||||||    
T  11721521 tgaaggttttagcgggaaggagaaagatcagggacgtatttgatgtgtccgagtgaaatgtga 11721583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 267
Target Start/End: Original strand, 30109 - 30295
Alignment:
Q  92 acatgactgaatagaaaacgaacagga--ggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctcgccatagatg 189  Q
    |||||||||||| ||||| ||| ||||  ||||||||||||  ||| ||||||| ||||| ||||||   |||||||||||| || |||||||  |||||    
T  30109 acatgactgaatggaaaaagaataggaacggcgttaccttatgaaatgacgaaatcttctatcaaaattgaatcttttgcaacgttcctcgccggagatg 30208  T
Q  190 atg---------atgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaa 267  Q
    |||         |||||||||| ||||||||||||||||| | |||| || || | |||||||||| |||||||||||  |||||||    
T  30209 atgttgatgaagatgatgaagggtttagcgggaaggagaacgatcagagatgtttttgatgttctggctgaaatgtgatcatggaaa 30295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 4839 - 4758
Alignment:
Q  186 gatgatgatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgttctgactgaaatgtgaggatggaaa 267  Q
    ||||| ||||||||| ||||||  |||||| ||||  |||||||| |||| |||| || || |||||||||||| |||||||    
T  4839 gatgaagatgatgaatgttttactgggaagaagaacagtcagggatgtgtttgatattatggctgaaatgtgagaatggaaa 4758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 27349519 - 27349482
Alignment:
Q  194 tgatgaaggttttagcgggaaggagaaaggtcagggac 231  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  27349519 tgatgaaggttttagcgagaaggagaatggtcagggac 27349482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 35395688 - 35395643
Alignment:
Q  202 gttttagcgggaaggagaaaggtcagggacgtgtatgatgttctga 247  Q
    |||||||||||||| |||| ||||| |||||||| |||||||||||    
T  35395688 gttttagcgggaagaagaagggtcaaggacgtgtttgatgttctga 35395643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University