View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_high_30 (Length: 273)
Name: NF16281_high_30
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 41558428 - 41558183
Alignment:
| Q |
18 |
aataaatgtctctttttgaactatgtttgttctcttgtaaaagcttctgaacaatcaccagaactctcaacatcacatctaaaagcaaaataacnnnnnn |
117 |
Q |
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| T |
41558428 |
aataaatgtctctttttgaactatgtttgttctcttgtaaaagcttctgaacaatcaccagaactctcaacatcacatctaaaagcaaaataacaaaaaa |
41558329 |
T |
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| Q |
118 |
nnctcaaaacctagagaacatgaatacaatgagtaaactactaaattagtcccttacttcgtacaccgatttcaaataggtccctgagattatgaatatt |
217 |
Q |
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| T |
41558328 |
aactcaaaacctagagaacaggaatacaatgagtaaactactaaattagtcccttacttcgtacaccgatttcaaataggtccctgagattatgaatatt |
41558229 |
T |
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| Q |
218 |
tcgaaaaggtttgttacactattaaactctcaagatgatccctatg |
263 |
Q |
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| T |
41558228 |
tcgaaaaggtttgttacactattaaactctcaagatgatccctatg |
41558183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 41542301 - 41542268
Alignment:
| Q |
18 |
aataaatgtctctttttgaactatgtttgttctc |
51 |
Q |
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| T |
41542301 |
aataaatgtctctttttgaactatgtttgttctc |
41542268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 28485693 - 28485612
Alignment:
| Q |
146 |
atgagtaaactactaaattagtcccttacttcgtacaccgatttcaaataggtccctgagattatgaatatttcgaaaaggt |
227 |
Q |
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| T |
28485693 |
atgagtaaactaccaaattagtccctgactttgtagggcgcattcaaataagtccctgaaagtatgaatatttcaaaaaggt |
28485612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 28596941 - 28596869
Alignment:
| Q |
190 |
caaataggtccctgagattatgaatatttcgaaaaggtttgttacactattaaactctcaagatgatccctat |
262 |
Q |
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||||||||||||||| || |||||||||| ||||||||| || |||||||||| ||||| || ||||||| |
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| T |
28596941 |
caaataggtccctgaaataatgaatattttgaaaaggttccggactctattaaactgtcaagttggtccctat |
28596869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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