View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_high_31 (Length: 273)
Name: NF16281_high_31
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 45282525 - 45282779
Alignment:
| Q |
1 |
atttcaatcacattggctatgtatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgc |
100 |
Q |
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| T |
45282525 |
atttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgc |
45282624 |
T |
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| Q |
101 |
cactttttctcatatactgtttcttcattcataagtacataattaattaaataaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagt |
200 |
Q |
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| T |
45282625 |
cactttttctcatatactctttcttcattcataagtaaataattaattaaataaaataaaaaagttttgatcgatgataattgaattaagtaccgaaggt |
45282724 |
T |
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| Q |
201 |
ggcggtttgcatggtcttgacaccagcagcaaagctctttctaccggtgacaatg |
255 |
Q |
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| T |
45282725 |
ggcggtttgcatggtcttgacaccagcagcaaagctctttctaccagtgacaatg |
45282779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 45274282 - 45274538
Alignment:
| Q |
1 |
atttcaatcacattggctatgtatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgc |
100 |
Q |
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| T |
45274282 |
atttcgatcacactggctatatatgtcaatgttatatgtatatatttctcttttcaatgcgagttatgttttcttcaaaaataaattttgagagtgatgc |
45274381 |
T |
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| Q |
101 |
cactttttctcatatactgtttcttcattcataa-gtacataattaattaaataaaat-aaaaatgttttgatcgatgataattgaattacgtaccgaaa |
198 |
Q |
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| T |
45274382 |
tactttttcttatatactctttcttcaatcataaggtatacaattaatcaaataaaataaaaaaagctttgatagataataattgaattacgtaccgaag |
45274481 |
T |
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| Q |
199 |
gtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccggtgacaatg |
255 |
Q |
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| T |
45274482 |
gtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccggtgacaatg |
45274538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 48 - 255
Target Start/End: Original strand, 45293957 - 45294167
Alignment:
| Q |
48 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcata--tactgtttcttcattcataag-tacataatt |
144 |
Q |
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| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatt |
45294056 |
T |
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| Q |
145 |
aattaaataaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttctac |
244 |
Q |
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| T |
45294057 |
tattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttc |
45294156 |
T |
|
| Q |
245 |
cggtgacaatg |
255 |
Q |
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| T |
45294157 |
cggtaacaatg |
45294167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 48 - 255
Target Start/End: Original strand, 45302917 - 45303127
Alignment:
| Q |
48 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcata--tactgtttcttcattcataag-tacataatt |
144 |
Q |
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| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatt |
45303016 |
T |
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| Q |
145 |
aattaaataaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttctac |
244 |
Q |
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| T |
45303017 |
tattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttc |
45303116 |
T |
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| Q |
245 |
cggtgacaatg |
255 |
Q |
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| T |
45303117 |
cggtaacaatg |
45303127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 45 - 193
Target Start/End: Original strand, 45270796 - 45270943
Alignment:
| Q |
45 |
tatatcttttcaatgttagtta-tgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactgtttcttcattcataa-gtacataa |
142 |
Q |
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|||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||| |||| ||| |||| | ||||||||||||| ||||| || |
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| T |
45270796 |
tatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaa |
45270895 |
T |
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| Q |
143 |
ttaattaaataaaataaaaatgttttgatcgatgataattgaattacgtac |
193 |
Q |
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||||||||||||||||||| | |||||||||| |||| |||||||||||| |
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| T |
45270896 |
ttaattaaataaaataaaa--gctttgatcgat-ataactgaattacgtac |
45270943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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