View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_high_36 (Length: 253)
Name: NF16281_high_36
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 5655739 - 5655504
Alignment:
| Q |
13 |
agaagcatagggttcaactcaaatggttctgtgtttcttgatggtaattataaattgcatttatttaccatttgaaaacattacatttctataggtcaaa |
112 |
Q |
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| T |
5655739 |
agaagcatagggttcaactcaaatggttctgtgtttcttgatggtaattataaattgcatttatttaccatttgaaaacattacatttctataggtcaaa |
5655640 |
T |
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| Q |
113 |
atatgttagtcaataggtaacactaataaaatgctgcacaa---------------agttttaatacttttacaaatcttgtttcaatttctgtttcttt |
197 |
Q |
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| T |
5655639 |
atatgttagtcaataggtaacactaataaaatgctgcacaaattcacaagtactatagttttaatacttttacaaatcttgtttcaatttctgtttcttt |
5655540 |
T |
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| Q |
198 |
atgatatctaattgtaaaatttggttacaggaatga |
233 |
Q |
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| T |
5655539 |
atgatatctaattgtaaaatttggttacaggaatga |
5655504 |
T |
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