View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_high_40 (Length: 245)
Name: NF16281_high_40
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 37271813 - 37272032
Alignment:
| Q |
11 |
tagattattctaggttcagaacaatgtctcctacattctcactaagttcagtcctatcactatgatcgatcaagccgaaagcagcagcaaaaataagtct |
110 |
Q |
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| T |
37271813 |
tagatttttctaggttcagaacaatgtctcctacattctcactaagttcaatcctatcactatgatcgatcaagccgaaagcagcagcaaaaataagtct |
37271912 |
T |
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| Q |
111 |
aaggaaaatgacaactccctcacttgatcaattattctatagaatgtatctctcacctccttttacaagggtgcatcatcttatatactaccctaatgtg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37271913 |
aaggaaaatgacaactccctcacttgatcaattattctatggaatgtatctctcacctccttttacaagggtgcatcatcttatatactaccctaatgtg |
37272012 |
T |
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| Q |
211 |
tctagaaagtggtagaattt |
230 |
Q |
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|||||||||||||||||||| |
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| T |
37272013 |
tctagaaagtggtagaattt |
37272032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 37266820 - 37266916
Alignment:
| Q |
11 |
tagattattctaggttcagaacaatgtctcctacattctcactaagttcagtcctatcactatgatcgatcaagccgaaagcagcagcaaaaataagtct |
110 |
Q |
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|||||| |||||||||||||||||| ||||||||| ||||||||||||| ||||||||| || |||||||||||| |||||||||| || |||||| |
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| T |
37266820 |
tagatttttctaggttcagaacaatttctcctacactctcactaagttcgatcctatcaccat----gatcaagccgaatgcagcagcaacaagaagtct |
37266915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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