View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16281_high_6 (Length: 462)

Name: NF16281_high_6
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16281_high_6
NF16281_high_6
[»] scaffold0440 (1 HSPs)
scaffold0440 (18-162)||(9967-10111)
[»] chr2 (5 HSPs)
chr2 (18-166)||(31528494-31528641)
chr2 (18-150)||(31626654-31626784)
chr2 (18-161)||(13710174-13710316)
chr2 (18-152)||(40018082-40018216)
chr2 (18-89)||(16295002-16295073)
[»] chr5 (9 HSPs)
chr5 (18-161)||(15532199-15532341)
chr5 (18-158)||(15542384-15542523)
chr5 (18-157)||(33575193-33575331)
chr5 (55-160)||(26711464-26711567)
chr5 (55-160)||(26981201-26981304)
chr5 (48-160)||(22159881-22159992)
chr5 (18-162)||(34405951-34406096)
chr5 (18-89)||(7650012-7650084)
chr5 (37-160)||(14616429-14616551)
[»] chr4 (4 HSPs)
chr4 (18-161)||(12172076-12172219)
chr4 (18-160)||(2541988-2542128)
chr4 (18-89)||(647274-647346)
chr4 (18-89)||(650546-650618)
[»] chr3 (6 HSPs)
chr3 (18-161)||(11138569-11138711)
chr3 (18-160)||(22626312-22626453)
chr3 (18-164)||(39563506-39563651)
chr3 (50-94)||(20536401-20536445)
chr3 (49-89)||(35366510-35366549)
chr3 (49-89)||(46731589-46731629)
[»] chr6 (7 HSPs)
chr6 (18-161)||(13017188-13017330)
chr6 (18-162)||(22221826-22221969)
chr6 (18-162)||(22247661-22247804)
chr6 (18-89)||(14790721-14790793)
chr6 (18-89)||(14795749-14795821)
chr6 (37-160)||(1838598-1838720)
chr6 (18-49)||(30978321-30978352)
[»] chr7 (9 HSPs)
chr7 (18-160)||(23759609-23759749)
chr7 (18-152)||(11279595-11279728)
chr7 (18-152)||(36222317-36222450)
chr7 (23-152)||(294969-295098)
chr7 (18-160)||(33313099-33313239)
chr7 (18-152)||(46846320-46846453)
chr7 (18-89)||(6967250-6967322)
chr7 (19-89)||(17866424-17866495)
chr7 (49-98)||(3861968-3862016)
[»] scaffold0264 (1 HSPs)
scaffold0264 (18-160)||(24185-24326)
[»] chr8 (1 HSPs)
chr8 (18-162)||(12575298-12575440)
[»] chr1 (4 HSPs)
chr1 (18-89)||(10765022-10765094)
chr1 (18-89)||(13493365-13493437)
chr1 (20-89)||(13496092-13496162)
chr1 (37-89)||(32505931-32505983)


Alignment Details
Target: scaffold0440 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 9967 - 10111
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttt 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9967 actcaactgcctaggggaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtccctgaggaaacgaattcttt 10066  T
Q  118 tattacttccatcgaatttggttcacttaccaaatttctatcaag 162  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||||    
T  10067 tattacttcgatcgaatttgattcacttgccaaatttctatcaag 10111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 31528494 - 31528641
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | |||||| |||| |||    
T  31528494 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacaaatt-ttt 31528592  T
Q  118 tattacttccatcgaatttggttcacttaccaaatttctatcaagaagc 166  Q
    ||||||||| |||||||||||||||||| |||||| |||||||| ||||    
T  31528593 tattacttcgatcgaatttggttcacttgccaaatatctatcaaaaagc 31528641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 31626654 - 31626784
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattctt 116  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| |||     |||||||||  ||    
T  31626654 actcaactgcctagggcaccaatataaattttacacatcctttttaataatgaaattgctaagtagaagtt-aatacagtcctcattgaaacgaat--tt 31626750  T
Q  117 ttattacttccatcgaatttggttcacttaccaa 150  Q
    |||||||||| || ||||||||||||||||||||    
T  31626751 ttattacttcgattgaatttggttcacttaccaa 31626784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 13710174 - 13710316
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattctt 116  Q
    |||||||| |||  |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |  |   ||||||||  ||    
T  13710174 actcaacttcctcaggcatcaatataaattttatacatcctttttaataatgaaattgctaagtagaagttaaatacagttctcgtaaaaacgaat--tt 13710271  T
Q  117 ttattacttccatcgaatttggttcacttaccaaatttctatcaa 161  Q
    |||||||||| || ||||||||||||||| |||||| ||||||||    
T  13710272 ttattacttcgattgaatttggttcacttgccaaatatctatcaa 13710316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 40018082 - 40018216
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattctt 116  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||  ||||||| |||| |||||||||| || ||| || | |||| |||| ||    
T  40018082 actcaactgcctagggcatcaatataaattttatacatcctttttaataaaaaaattgccaagtcgaagttaaatgcactccttgtgaaaacaaatt-tt 40018180  T
Q  117 ttattacttccatcgaatttggttcacttaccaaat 152  Q
    |||||||||| || ||||||||||||||| ||||||    
T  40018181 ttattacttcgattgaatttggttcacttgccaaat 40018216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 16295002 - 16295073
Alignment:
Q  18 actcaactgcctagggcaccaatataaa-tttatacatcctttttaataatgaaattgctaagtagaagttaa 89  Q
    |||||||||||||||||| ||||||||| ||||||||||| |||  |||| ||||||||| ||||||| ||||    
T  16295002 actcaactgcctagggcatcaatataaattttatacatcc-tttcgataacgaaattgctgagtagaaattaa 16295073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 15532341 - 15532199
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | ||||||||||| |||    
T  15532341 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgaatt-ttt 15532243  T
Q  118 tattacttccatcgaatttggttcacttaccaaatttctatcaa 161  Q
    ||||||||| |||||||||||||||| | |||||| ||||||||    
T  15532242 tattacttcgatcgaatttggttcacatgccaaatatctatcaa 15532199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 15542523 - 15542384
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||  | ||||||||||| |||    
T  15542523 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgttaagtagaagttaaatacagtcctcgtggaaacgaatt-ttt 15542425  T
Q  118 tattacttccatcgaatttggttcacttaccaaatttctat 158  Q
    ||||||||| |||||||||||||||||| |||||| |||||    
T  15542424 tattacttcgatcgaatttggttcacttgccaaatatctat 15542384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 33575193 - 33575331
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||  | | ||||||||| |||    
T  33575193 actcaactgcctagggcaccaatataaatttatacatcctttttaataataaaattgctaaatagaagttaaatacagtcctcgtgaaaacgaatt-ttt 33575291  T
Q  118 tattacttccatcgaatttggttcacttaccaaatttcta 157  Q
    ||||||||| || ||||||||||||||| |||||||||||    
T  33575292 tattacttcgattgaatttggttcacttgccaaatttcta 33575331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 55 - 160
Target Start/End: Complemental strand, 26711567 - 26711464
Alignment:
Q  55 cctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttttattacttccatcgaatttggttcacttaccaaattt 154  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||  | ||||||||||| |||||||||||| || ||||||||||||||| |||||| |    
T  26711567 cctttttgataatgaaattgctaagtagaagtt-aatacagtcctcgtggaaacgaatt-ttttattacttcaattgaatttggttcacttgccaaatat 26711470  T
Q  155 ctatca 160  Q
    ||||||    
T  26711469 ctatca 26711464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 55 - 160
Target Start/End: Complemental strand, 26981304 - 26981201
Alignment:
Q  55 cctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttttattacttccatcgaatttggttcacttaccaaattt 154  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||  | ||||||||||| |||||||||||| || ||||||||||||||| |||||| |    
T  26981304 cctttttgataatgaaattgctaagtagaagtt-aatacagtcctcgtggaaacgaatt-ttttattacttcaattgaatttggttcacttgccaaatat 26981207  T
Q  155 ctatca 160  Q
    ||||||    
T  26981206 ctatca 26981201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 22159881 - 22159992
Alignment:
Q  48 tatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttttattacttccatcgaatttggttcacttac 147  Q
    |||||||||||||| | || ||||||||||||||||||||||||||| |||  | |||||| |||| |||||||||||| |||||||||||| |||||      
T  22159881 tatacatcctttttgacaaagaaattgctaagtagaagttaaatacagtcctcgtggaaacaaatt-ttttattacttcgatcgaatttggtacacttgt 22159979  T
Q  148 caaatttctatca 160  Q
    ||||| |||||||    
T  22159980 caaatatctatca 22159992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 34405951 - 34406096
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattctt 116  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||| ||||  ||  ||| || ||| ||||| | |     
T  34405951 actcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtccttgtggatacgaacttta 34406050  T
Q  117 ttattacttccatcgaatttggttcacttaccaaatttctatcaag 162  Q
    ||| |||||| || |  |||||| ||||| |||||| |||||||||    
T  34406051 ttactacttcgatagcttttggtacacttgccaaatatctatcaag 34406096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 7650084 - 7650012
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaagttaa 89  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||| | ||||||| ||||    
T  7650084 actcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgttgagtagaaattaa 7650012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 14616551 - 14616429
Alignment:
Q  37 caatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttttattacttccatcgaattt 136  Q
    ||||||||||| ||||||||||||| |||| ||||||||  ||||||| ||||  ||  |||  | ||| |||||||  ||||||||||| || |  |||    
T  14616551 caatataaattcatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatacgaatttatttattacttcgatag-tttt 14616453  T
Q  137 ggttcacttaccaaatttctatca 160  Q
    ||||||||| |||||| |||||||    
T  14616452 ggttcacttgccaaatctctatca 14616429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 12172076 - 12172219
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | ||||||||  | |||    
T  12172076 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgatcttttt 12172175  T
Q  118 tattacttccatcgaatttggttcacttaccaaatttctatcaa 161  Q
    ||||||||| |||||||||||||||||| |||||| ||||||||    
T  12172176 tattacttcgatcgaatttggttcacttgccaaatatctatcaa 12172219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 2541988 - 2542128
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttt 117  Q
    ||||||||||||||||||||| |  || || |||||||||||||||||||||||||||| ||||||||||||||||| |||  | ||| |||||||  ||    
T  2541988 actcaactgcctagggcaccattg-aatttaatacatcctttttaataatgaaattgctcagtagaagttaaatacagtcctcgtggatacgaatt-att 2542085  T
Q  118 tattacttccatcgaatttggttcacttaccaaatttctatca 160  Q
    ||||||||| || || |||||| ||||| |||||| |||||||    
T  2542086 tattacttcgattgactttggtacacttgccaaatatctatca 2542128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 647346 - 647274
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaagttaa 89  Q
    |||||| |||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||| ||||    
T  647346 actcaaatgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaa 647274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 650618 - 650546
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaagttaa 89  Q
    |||||| |||||||||||  ||||||||||||||||||||||||| |||  ||||||||  ||||||| ||||    
T  650618 actcaaatgcctagggcaatcaatataaatttatacatcctttttgatatagaaattgccgagtagaaattaa 650546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 11138711 - 11138569
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | ||||||||| | |||    
T  11138711 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgaact-ttt 11138613  T
Q  118 tattacttccatcgaatttggttcacttaccaaatttctatcaa 161  Q
    ||||||||| |||||||||||||||||| |||||| ||||||||    
T  11138612 tattacttcgatcgaatttggttcacttgccaaatatctatcaa 11138569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 22626453 - 22626312
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | ||||||||| | |||    
T  22626453 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgaact-ttt 22626355  T
Q  118 tattacttccatcgaatttggttcacttaccaaatttctatca 160  Q
    ||||||||| |||||||||||||||||| |||||| |||||||    
T  22626354 tattacttcgatcgaatttggttcacttgccaaatatctatca 22626312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 39563651 - 39563506
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattctt 116  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||| |||  | ||||||||||| ||    
T  39563651 actcaactgcctagggcactaatataaattttacacatccttttttataatgaaattgctaagtagaagtt-aatacagtcctcgtggaaacgaatt-tt 39563554  T
Q  117 ttattacttccatcgaatttggttcacttaccaaatttctatcaagaa 164  Q
    |||||||||  || ||||||||||||||| |||||| |||||||||||    
T  39563553 ttattactttgattgaatttggttcacttgccaaatatctatcaagaa 39563506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 20536445 - 20536401
Alignment:
Q  50 tacatcctttttaataatgaaattgctaagtagaagttaaataca 94  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  20536445 tacatcctttttaataatgaaatttctaagtagaagttaaataca 20536401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 35366510 - 35366549
Alignment:
Q  49 atacatcctttttaataatgaaattgctaagtagaagttaa 89  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  35366510 atacatccttttta-taatgaaattgctaagtagaagttaa 35366549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 46731589 - 46731629
Alignment:
Q  49 atacatcctttttaataatgaaattgctaagtagaagttaa 89  Q
    ||||||||||||| |||| ||||||||| ||||||||||||    
T  46731589 atacatcctttttgataaagaaattgctgagtagaagttaa 46731629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 13017330 - 13017188
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||  | ||||||||| | |||    
T  13017330 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatatagtcctcgtggaaacgaact-ttt 13017232  T
Q  118 tattacttccatcgaatttggttcacttaccaaatttctatcaa 161  Q
    ||||||||| |||||||||||||||||| |||||| ||||||||    
T  13017231 tattacttcgatcgaatttggttcacttgccaaatatctatcaa 13017188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 22221826 - 22221969
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttt 117  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||| |||||| | |||  | ||||||||||| | |    
T  22221826 actcaactgcctagggcaccaataataatttatacatcctttttaataatgaaattgcttagtagaagctaaatatagtcctcgtggaaacgaatt-tat 22221924  T
Q  118 tattacttccatcgaatttggttcacttaccaaatttctatcaag 162  Q
    || |||||| || |  |||||| ||||| ||||||||||||||||    
T  22221925 tactacttcgatagcttttggtacacttgccaaatttctatcaag 22221969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 22247661 - 22247804
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttt 117  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||| |||||| | |||  | ||||||||||| | |    
T  22247661 actcaactgcctagggcaccaataataatttatacatcctttttaataatgaaattgcttagtagaagctaaatatagtcctcgtggaaacgaatt-tat 22247759  T
Q  118 tattacttccatcgaatttggttcacttaccaaatttctatcaag 162  Q
    || |||||| || |  |||||| ||||| ||||||||||||||||    
T  22247760 tactacttcgatagcttttggtacacttgccaaatttctatcaag 22247804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 14790721 - 14790793
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaagttaa 89  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||| ||||    
T  14790721 actcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaa 14790793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 14795749 - 14795821
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaagttaa 89  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||| ||||    
T  14795749 actcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaa 14795821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 1838598 - 1838720
Alignment:
Q  37 caatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttttattacttccatcgaattt 136  Q
    ||||||||||||||||||||||||| |||| ||||||||  ||||||| ||||  ||  ||| || ||| |||||||  ||||||||||| ||  | |||    
T  1838598 caatataaatttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtccttgtggatacgaatttatttattacttcgat-aatttt 1838696  T
Q  137 ggttcacttaccaaatttctatca 160  Q
    ||||||||| |||||| |||||||    
T  1838697 ggttcacttgccaaatctctatca 1838720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 30978352 - 30978321
Alignment:
Q  18 actcaactgcctagggcaccaatataaattta 49  Q
    ||||||||||||||||||||||||||||||||    
T  30978352 actcaactgcctagggcaccaatataaattta 30978321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 23759749 - 23759609
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||  |  |||||||| | |||    
T  23759749 actcaactgcctagggcaccaatataaatttatacatcctttttaa-aatgaatttgctaagtagaagttaaatacagtcctcgtagaaacgaact-ttt 23759652  T
Q  118 tattacttccatcgaatttggttcacttaccaaatttctatca 160  Q
    ||||||||| || ||||||||||||||| |||||| |||||||    
T  23759651 tattacttcgattgaatttggttcacttgccaaatatctatca 23759609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 11279595 - 11279728
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattctt 116  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||| || |||||| |||  ||    
T  11279595 actcaactgcctagggcaccaatataaattttatacatcctttttaataatgaaattgctaagtagaaattaaatatagtccttgtggaaacaaat--tt 11279692  T
Q  117 ttattacttccatcgaatttggttcacttaccaaat 152  Q
    |||||||||| || ||||||||||||||| ||||||    
T  11279693 ttattacttcgattgaatttggttcacttgccaaat 11279728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 36222450 - 36222317
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattctt 116  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||  | || |||||||  ||    
T  36222450 actcaactgcctagggcaccaatataaattttatacatcctttttaataatgaaattgctacgtagaaattaaatacaatcctcgtggtaacgaat--tt 36222353  T
Q  117 ttattacttccatcgaatttggttcacttaccaaat 152  Q
    |||||||||| || |||||||||||| || ||||||    
T  36222352 ttattacttcaattgaatttggttcatttgccaaat 36222317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 294969 - 295098
Alignment:
Q  23 actgcctagggcaccaatataaatttat-acatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttttatt 121  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||  | ||| || |||| |||||||    
T  294969 actgcctcgggcatcaatataaatttattacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggacacaaatt-ttttatt 295067  T
Q  122 acttccatcgaatttggttcacttaccaaat 152  Q
    ||||| || ||||||||||||||| ||||||    
T  295068 acttcgattgaatttggttcacttgccaaat 295098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 33313099 - 33313239
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattctt 116  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| |||  |  |||||||||  ||    
T  33313099 actcaactgcctagggcaccaatataaattttacacatcctttttaataatgaaattgctaagtagaagtt-aatacagtcctcgtagaaacgaat--tt 33313195  T
Q  117 ttattacttccatcgaatttggttcacttaccaaatttctatca 160  Q
    |||||||||| || ||||||| |||||||  ||||| |||||||    
T  33313196 ttattacttcgattgaatttgtttcacttctcaaatatctatca 33313239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 46846453 - 46846320
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattctt 116  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||  | ||||||  ||  ||    
T  46846453 actcaactgcctagggcaccaatataaattttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaac--atattt 46846356  T
Q  117 ttattacttccatcgaatttggttcacttaccaaat 152  Q
    |||||||||| || |||| || ||||||| ||||||    
T  46846355 ttattacttcgattgaatctgattcacttgccaaat 46846320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 6967250 - 6967322
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaagttaa 89  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||| ||||    
T  6967250 actcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaa 6967322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 17866495 - 17866424
Alignment:
Q  19 ctcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaagttaa 89  Q
    |||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||| ||||    
T  17866495 ctcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaa 17866424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 3862016 - 3861968
Alignment:
Q  49 atacatcctttttaataatgaaattgctaagtagaagttaaatacaatcc 98  Q
    |||||||||||| ||||||||||||||||||||||||||||  |||||||    
T  3862016 atacatcctttt-aataatgaaattgctaagtagaagttaataacaatcc 3861968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 24326 - 24185
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttt 117  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||  | |||||| |||| | |    
T  24326 actcaactgcctagggcaccaataataatttatacatcctttttaataatgaaattgttgagtagaagttaaatacagtcctcgtggaaacaaatt-tat 24228  T
Q  118 tattacttccatcgaatttggttcacttaccaaatttctatca 160  Q
    || |||||| || |  |||||| ||||| ||||||||||||||    
T  24227 tactacttcgatagcttttggtacacttgccaaatttctatca 24185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 12575440 - 12575298
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacaatccctgaggaaacgaattcttt 117  Q
    ||||||||||||||||||||| |  || || |||||||||||||||||||||| ||| | ||||||||||||  ||| |||  | ||| |||||||  ||    
T  12575440 actcaactgcctagggcaccattg-aatttaatacatcctttttaataatgaacttgttgagtagaagttaacaacagtcctcgtggatacgaatt-att 12575343  T
Q  118 tattacttccatcgaatttggttcacttaccaaatttctatcaag 162  Q
    ||||||||| || ||||||||| ||||| |||||| | |||||||    
T  12575342 tattacttcgattgaatttggtacacttgccaaatatttatcaag 12575298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 10765022 - 10765094
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaagttaa 89  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||| ||||    
T  10765022 actcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaa 10765094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 13493365 - 13493437
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaagttaa 89  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||| ||||    
T  13493365 actcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaa 13493437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 13496092 - 13496162
Alignment:
Q  20 tcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaagttaa 89  Q
    ||||||||||||| ||  ||||||||||||||||||||||||| |||| ||||||||  ||||||| ||||    
T  13496092 tcaactgcctaggacaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaa 13496162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 32505983 - 32505931
Alignment:
Q  37 caatataaatttatacatcctttttaataatgaaattgctaagtagaagttaa 89  Q
    ||||||||||||||||||||||||| |||| |||||||   ||||||||||||    
T  32505983 caatataaatttatacatcctttttgataaagaaattgtcgagtagaagttaa 32505931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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