View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_high_9 (Length: 448)
Name: NF16281_high_9
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 448
Target Start/End: Complemental strand, 51409152 - 51408715
Alignment:
| Q |
10 |
tataataatgtatgcctcttttcagctaaatgcttctagtgtgcgctagtctttttagaatttatcaattttttagataagtagnnnnnnnnnnnagtta |
109 |
Q |
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| T |
51409152 |
tataataatgtatgcctcttttcagctaaatgtttctaatgtgtactagtctttttagaatttgtcaattttttagataagtagtttttttttt-agtta |
51409054 |
T |
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| Q |
110 |
ttgcgcgtgatgtaaaagacttgaaataagctaaccgcatgggtcagtgctgcttgtaaattgctatgaagcacatatatgggctcaacactgacaggtc |
209 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51409053 |
ttgcacgtgatgtaaaagacttgaaataagctaaccgcatgggtcagggctgcttgtaaattgctatgaagcacatatatgggcacaacactgacaggtc |
51408954 |
T |
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| Q |
210 |
gacatcgataaaaagtggaaaaaataaataacttaacgtaatcatctgtgtcagtgtcgatgttttgaaatacacttggatttgatgcttgaatttgttt |
309 |
Q |
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||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51408953 |
gacatcggtaaaaattggaaaaaataaataactgaacgtaatcatctgtgtcagtgtcgatgttttgaaatacacttggatttgatgcttgaatttgttt |
51408854 |
T |
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| Q |
310 |
gtacatttaactaacatattattgaagatacgattgttgaggtcgatccaatatctatcgatccaatatctatacaaatattattacacaagtacttagg |
409 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51408853 |
gtacatttaactaacatattatttaagatacgattgttgaggtcgatccaatatctatcgatccaatatctatacaaatattattgcacaagtacttagg |
51408754 |
T |
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| Q |
410 |
gcgatggccaacaacataaggaaaaaagcatcaattttc |
448 |
Q |
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| T |
51408753 |
gtgatggccaacaacataaggaaaaaagcatcaattttc |
51408715 |
T |
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