View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_low_1 (Length: 843)
Name: NF16281_low_1
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 303 - 613
Target Start/End: Complemental strand, 52035589 - 52035268
Alignment:
| Q |
303 |
aatgaaccactttattctctctgaccaatttcaacataagactgcctcaattcattgttctacc-atgcaattccttggtgcttttgacatggtttttaa |
401 |
Q |
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| T |
52035589 |
aatgaaccactttattgtctctgaccaatttcaacataagactgcctcaattcattgttctacccatgcaattccttggtgcttttgacatggtttttaa |
52035490 |
T |
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| Q |
402 |
cttaaaatcatagataattaaatttaaaatgagagatgaggagagttgcaaatgattagaatataaacggtcacaacaattgagtttgatcattcactaa |
501 |
Q |
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| T |
52035489 |
cttaaaatcatagataattaaatttaaaatgagagatgatgagagttgcaaatgattagaatataaacggtcacaacaattgagtttgatcattcactaa |
52035390 |
T |
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| Q |
502 |
aataatatttgatcaagttttagtttactttgaactatcatgaccctttaaaagtttccacta----------tatactagtaactaaaattgataagac |
591 |
Q |
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| T |
52035389 |
aataatatttgatcaagttttagtttactttgaactatcatgaccctttaaaagtttccactatatatatatatatactagtaactaaaattgataagac |
52035290 |
T |
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| Q |
592 |
aagaaaatagttcaaataaaca |
613 |
Q |
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| T |
52035289 |
aagaaaataattcaaacaaaca |
52035268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 634 - 823
Target Start/End: Complemental strand, 52035275 - 52035086
Alignment:
| Q |
634 |
aacaaacaacaaaaactttaagcaacttaatttaaaagtagcagaacaagaagtaaataaatgaaatacatgatgagaccatctaaatctaaattataaa |
733 |
Q |
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| T |
52035275 |
aacaaacaacaaaaactttaagcaacttaatttaaaagtagcagaacaagaagtaaataaatgaaatacatgatgagagcatctaaatctaaattataaa |
52035176 |
T |
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| Q |
734 |
aggggactaatggtatcaaaatgtaggacaaccatcagtaattatgcctttagcagtaggacatgtagcaagaggacaatgctcatcttg |
823 |
Q |
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| T |
52035175 |
aggggactaatggtatcaaaatgtaggacaaccatcagtaactatgcctttagcagtaggacatgtagcaagaggacaatgctcatcttg |
52035086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 52035811 - 52035632
Alignment:
| Q |
17 |
cacagataataagttctctcccgacaatgtatatcatagctcatacggcaagttgagtcgagttaaaaatgacatgagatgcttttgatcacaatattga |
116 |
Q |
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| T |
52035811 |
cacagataataagttctctcccgacaatgtatatcatcgctcatacggcaagttgagtcgagttaaaaatgacatgagatgcttttgatcacaatattga |
52035712 |
T |
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| Q |
117 |
caaaacgatgcaatgagtgtgtattaaattttagctactttatttatttcattctctaaaaaatgacacttttttaaaaa |
196 |
Q |
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| T |
52035711 |
caaaacgatgcaatgagtgtgtattaaattttagctactttatttatttcattctctaaaaaatgacacttttgtaaaaa |
52035632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 52035641 - 52035590
Alignment:
| Q |
226 |
tttgtaaaaattgaatgaaagattgtgaaagaaaaagcatattattcgtatc |
277 |
Q |
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| T |
52035641 |
tttgtaaaaattgaatgaaagattgtgaaagaaaaagcatattattcgtatc |
52035590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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