View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_low_12 (Length: 430)
Name: NF16281_low_12
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 409
Target Start/End: Original strand, 2772731 - 2773129
Alignment:
| Q |
11 |
tggagaagcataggtcaaataattataatgttattatgaaggggaagaattttccgatgtgatttttcaaatgatcaccagaaggtttgtttattcggtt |
110 |
Q |
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| T |
2772731 |
tggagaaacataggtcaaataattataatgttattatcaaggggaagaatttgccgatgtgatttttcaaatgatcaccagaaggtttgtttcttcggtt |
2772830 |
T |
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| Q |
111 |
gcttattcattgattggattttgtattgttatatatcatgaattgccattcttgactgactatgttgtatctaaagtgaagtaacttctatgttataatg |
210 |
Q |
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| T |
2772831 |
gcttattcattgattggattttgtattgttatatatcatgaattgccattcttgattgactatgttgtatctaaagtgaagtaacttctatgttataatg |
2772930 |
T |
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| Q |
211 |
tttgagtcattgctatgtattattatattaataattgaaatgttcagacatgagtaatttgaaattgtgttgtgattatgtgaactgtgtatttgtgcct |
310 |
Q |
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| T |
2772931 |
tttgaatcattgctatgtattattatattaataattgaaatgttcagacatgagtaatttgaaattgtgttgtgattatatgaactgtgtatttgtgccg |
2773030 |
T |
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| Q |
311 |
caatgtgtcaaaattgcacgttatgaacatgtctaactcatgtcgatgatagtcctcaaataagaagtgacttcatttgaaattgtgttatgatcatgt |
409 |
Q |
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| T |
2773031 |
caatgtgtcaaaattgcacgttatgaacatgtctaactcatgtcgatgatagtcctcaaataagaagcgacttcatttgaaattgtgttatgatcatgt |
2773129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 377
Target Start/End: Original strand, 2773105 - 2773213
Alignment:
| Q |
267 |
atttgaaattgtgttgtgattatgtgaactgtgtatttgtgcctcaatgtgtcaaaattgcacgttatgaacatgtctaactcatgtcgatgatagtcct |
366 |
Q |
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| T |
2773105 |
atttgaaattgtgttatgatcatgtgaactatgtatttgtgtcgcaatgtgtc--aattgcgcattatgaatatgtctaactcatgttggcgattatcct |
2773202 |
T |
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| Q |
367 |
caaataagaag |
377 |
Q |
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| T |
2773203 |
caaataagaag |
2773213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 308
Target Start/End: Complemental strand, 33492543 - 33492460
Alignment:
| Q |
225 |
atgtattattatattaataattgaaatgttcagacatgagtaatttgaaattgtgttgtgattatgtgaactgtgtatttgtgc |
308 |
Q |
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| T |
33492543 |
atgtgttattatatgaataactgagatgtccaatcatgagtaacttgaaattgtggtgtgactatgagaatagtgtatttgtgc |
33492460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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