View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_low_15 (Length: 400)
Name: NF16281_low_15
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 380
Target Start/End: Original strand, 32192296 - 32192668
Alignment:
| Q |
8 |
aagcaaaggcacggcacagacacactgcgcagagtattcataaggaggagggcatggttgacttggacagcttacaatggagttaccattcatatcgttt |
107 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32192296 |
aagcaatggcacggcacagacacactgcgcagaatattcataaggaggagggcatggttgacttggacagcttacaatggagttaccattcatatcgttt |
32192395 |
T |
|
| Q |
108 |
tcacttttagatccacaaaattgaactaaggtgttgttatttgagcatataggattcccctgaagcctggaaaatagtactttttcaaaatgataatgtg |
207 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
32192396 |
tcacttttagatccacaaaattgaactaaggagttgttatttgagcatataggattcccctgaagcctggaaaatagtgatttttcaaaacgataatgtg |
32192495 |
T |
|
| Q |
208 |
acaagcttttaannnnnnnnggaaccaaaataagatgaaataatcaacaagttttgatttatatcataaggatattaagcatagtttatttatctttttg |
307 |
Q |
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||||| | || | ||||| || |||| | ||||| |||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32192496 |
acaagttattcataaaaaatggaactaatataaaaggaaatgatcaacaattttttatttatatcataaggatattaagcaaagtttatttatctttttg |
32192595 |
T |
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| Q |
308 |
gtgcaccagggtattctcgactgggttccataaactaatccctcgaggtacaaggattcattcatgttggcta |
380 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32192596 |
gtgcaccagggtattctccagtgggttccataaactaatccctcgaggcacaaggattcattcatgttggcta |
32192668 |
T |
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