View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_low_19 (Length: 366)
Name: NF16281_low_19
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 21143785 - 21143445
Alignment:
| Q |
19 |
gtcctaacttcatttgacaaattcagattcattgctgtcacacctttgactccacatattaacatattgtgaatcatcattcaatcaaaattgaaagaat |
118 |
Q |
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| T |
21143785 |
gtcctaacttcatttcacaaattcagattcattgctgtcacacctttgactacacatattaacatattgtgaatcatcattcaatcaaaattgaaagaat |
21143686 |
T |
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| Q |
119 |
cggattttgagtcttgaaaatacaaaatttaaattgcggagtgcattacgttatatattcataatattgcggacttaatcagtccgcaattgtatgtaaa |
218 |
Q |
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| T |
21143685 |
cggattttgagttttgaaaatacaaattttaaattgcggagtgcattacgttatatattcataatattgcggactgaatcagtccgcaattgtacgtaaa |
21143586 |
T |
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| Q |
219 |
aatccatatcttacaataaaaaggatgcaaatttaattaccttgcggatttggaacgaggaagcgagtagtatccggcgtgatgaccaagatcttcaata |
318 |
Q |
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| T |
21143585 |
aatccatatcttacaataaaaaggatgcaaatttaattaccttgcggatttggaacgaggaagcgagtagtatccggcatgatgaccaagatcttcaata |
21143486 |
T |
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| Q |
319 |
gaaggaccattagaatcactaaaaaatgagaacttcttctc |
359 |
Q |
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| T |
21143485 |
gaaggaccattagaatcactaaaaaacgagaacttcttctc |
21143445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 255 - 359
Target Start/End: Complemental strand, 21123626 - 21123522
Alignment:
| Q |
255 |
ttaccttgcggatttggaacgaggaagcgagtagtatccggcgtgatgaccaagatcttcaatagaaggaccattagaatcactaaaaaatgagaacttc |
354 |
Q |
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| T |
21123626 |
ttaccttgaagagttggaacgaggaagcgaatagtatccagcatggtgaccaagatcctcaatagaaggaccaccagaatcaccgaaaaacgagaacttc |
21123527 |
T |
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| Q |
355 |
ttctc |
359 |
Q |
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||||| |
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| T |
21123526 |
ttctc |
21123522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 359
Target Start/End: Complemental strand, 21149366 - 21149256
Alignment:
| Q |
249 |
atttaattaccttgcggatttggaacgaggaagcgagtagtatccggcgtgatgaccaagatcttcaatagaaggaccattagaatcactaaaaaatgag |
348 |
Q |
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||||| |||||| || | ||||||| ||||||| || ||||||||||| || |||||||||| ||||||||| | |||| ||||| || |||||| ||| |
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| T |
21149366 |
atttagttacctagcagctttggaatgaggaagtgaatagtatccggcatggtgaccaagattatcaatagaaagcccatcagaatgaccaaaaaacgag |
21149267 |
T |
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| Q |
349 |
aacttcttctc |
359 |
Q |
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||||| ||||| |
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| T |
21149266 |
aactttttctc |
21149256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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