View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_low_25 (Length: 328)
Name: NF16281_low_25
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 43974239 - 43973944
Alignment:
| Q |
14 |
catcatcaatgataacaaacctaggttcaacaccacttttcgaaaactcatcaagaccatgaaaaacaccaataggaccaacacttaaatagaaagcatc |
113 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43974239 |
catcatcaatgataacaaacctaggttcaacaccgcttttcaaaaactcatcaagaccatgaaaaacaccaataggaccaacacttaaatagaaagcatc |
43974140 |
T |
|
| Q |
114 |
ccatgtacaccaaccaaatttatcaaccaaatttggaagtgttttctcttccaaaagcctaaaagtattgagatgaaccctaatagcactataagcttca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43974139 |
ccatgtacaccaaccaaatttatcaaccaaatttggaagtgttttctcttccaaaagcctaaaagtattgagatgaaccctaatagcactataagcttca |
43974040 |
T |
|
| Q |
214 |
ttcatcaaagtataaggattttcactcacatgaacataagcaatcgcatcgaaactcgatgctttcacttgtgttgacccactttcagcacaaatc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43974039 |
ttcatcaaagtataaggattttcactcacatgaacataagcaatcgcatcgaaactcgatgctttcacttgtgttgacccactttcagcacaaatc |
43973944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 43564363 - 43564658
Alignment:
| Q |
14 |
catcatcaatgataacaaacctaggttcaacaccacttttcgaaaactcatcaagaccatgaaaaacaccaataggaccaacacttaaatagaaagcatc |
113 |
Q |
| |
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|||||||||||||||||||||| |||||||| || | ||| ||||| | ||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
43564363 |
catcatcaatgataacaaacctcggttcaactccgcctttagaaaaaccctcaagaccatgaaaaacaccaataggattaacagttaaatagaaagcatc |
43564462 |
T |
|
| Q |
114 |
ccatgtacaccaaccaaatttatcaaccaaatttggaagtgttttctcttccaaaagcctaaaagtattgagatgaaccctaatagcactataagcttca |
213 |
Q |
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||| || |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||| |
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| T |
43564463 |
ccaagtgcaccaaccaaatttatcaactaaatttggtagtgttttctcttccaatagcctaaaagtgttgagatgaacccttataacactataagcttct |
43564562 |
T |
|
| Q |
214 |
ttcatcaaagtataaggattttcactcacatgaacataagcaatcgcatcgaaactcgatgctttcacttgtgttgacccactttcagcacaaatc |
309 |
Q |
| |
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||||||||| ||||||||||||| | ||||||||||||||| |||| |||||| ||| || ||| | ||||| |||||||||||||||||| |
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| T |
43564563 |
ttcatcaaatcataaggattttcagaaaaatgaacataagcaatagcattgaaactagattctaccaccttggttgaaccactttcagcacaaatc |
43564658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 36432318 - 36432613
Alignment:
| Q |
14 |
catcatcaatgataacaaacctaggttcaacaccacttttcgaaaactcatcaagaccatgaaaaacaccaataggaccaacacttaaatagaaagcatc |
113 |
Q |
| |
|
|||| ||||||| |||||| || || ||||| || | ||| || || ||||| |||||||||||||||||||||||| ||| | ||||| |||||||| |
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| T |
36432318 |
catcgtcaatgacaacaaatcttggctcaacgccgccttttgagaaatcatcgagaccatgaaaaacaccaataggattcacagtcaaataaaaagcatc |
36432417 |
T |
|
| Q |
114 |
ccatgtacaccaaccaaatttatcaaccaaatttggaagtgttttctcttccaaaagcctaaaagtattgagatgaaccctaatagcactataagcttca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | ||||||||||||||| |
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| T |
36432418 |
ccatgtacaccaaccaaatttatcaaccaaatttggaagtgttttctcttccagtagcctaaaagtgttgagatgaaccctcaaagcactataagcttct |
36432517 |
T |
|
| Q |
214 |
ttcatcaaagtataaggattttcactcacatgaacataagcaatcgcatcgaaactcgatgctttcacttgtgttgacccactttcagcacaaatc |
309 |
Q |
| |
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||||||||| ||||||||||||| | ||||||||||||||| |||| ||||||| |||||||||| | |||||| ||||| |||||||||||| |
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| T |
36432518 |
ttcatcaaatcataaggattttcagaaaaatgaacataagcaatagcattgaaactcaatgctttcacctttgttgaaccactctcagcacaaatc |
36432613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 8952513 - 8952468
Alignment:
| Q |
264 |
gaaactcgatgctttcacttgtgttgacccactttcagcacaaatc |
309 |
Q |
| |
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||||||| ||||||| ||||||||||| | |||||||||||||||| |
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| T |
8952513 |
gaaactcaatgcttttacttgtgttgaactactttcagcacaaatc |
8952468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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