View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_low_26 (Length: 321)
Name: NF16281_low_26
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 32226925 - 32227211
Alignment:
| Q |
20 |
tagtgtttgtgaagagtcctaagaaacggacaggtagaggcttgttttaatgatgttgtcttgtgttagtgaatggaaggaatgattcatcaagaacggg |
119 |
Q |
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| T |
32226925 |
tagtgtttgtgaagagtcctaagaaacggacaggtagaggcttgttttaatgatgttgtcttgtgttagtgaatggaaggaatgattcatcaagaacggg |
32227024 |
T |
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| Q |
120 |
gttacctaatccacgttactgttaataattatacatatatattcacaaacaatcacaatattaaaatctgcatttagataatttaatgtgtatgttaagc |
219 |
Q |
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| T |
32227025 |
gttacctaatccacgttactgttaataattgtacatatatattcacaaacaatcacaatattaaaatctgcatttagataatttaatgtgtatgttaagc |
32227124 |
T |
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| Q |
220 |
tcaaaatcacaaggtgtgattaaaactacttaaggaacctacaatacaagtctcatttgtaactataaaaattactagttagaataa |
306 |
Q |
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| T |
32227125 |
tcaaaatcacaaggtgtgattaaaactacttaagtaacctacaatacaagtctcatttgtaactataaaaattgctagttagaataa |
32227211 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 8449230 - 8449174
Alignment:
| Q |
39 |
taagaaacggacaggtagaggcttgttttaatgatgttgtcttgtgttagtgaatgg |
95 |
Q |
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| T |
8449230 |
taagaaacggacatgtatagggttgtgctaatgatgttgtcttgtgttagtgaatgg |
8449174 |
T |
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