View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_low_27 (Length: 302)
Name: NF16281_low_27
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 290
Target Start/End: Complemental strand, 35991408 - 35991133
Alignment:
| Q |
15 |
atgaacaatgtgtcttttgtacttcctagcaatttttcaatcctgcaggctcataaacttggagtacaaggtgtttttacgacggattttcccacaaaac |
114 |
Q |
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| T |
35991408 |
atgaacaatgtgtcttttgtacttcctagcaatttttcaatcctgcaggctcataaacttggagtacaaggtgtttttacgacggattttcccacaaaac |
35991309 |
T |
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| Q |
115 |
ctcccgtgcaatttgattacaccggtaatgtaagtcgttcgttgtggcaaccgattcaagggactaaagttactaagttgagatttggatcaagggttca |
214 |
Q |
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| T |
35991308 |
ctcccgtgcaatttgattacaccggtaatgtgagtcggtcgttgtggcaaccgattcaagggactaaagttactaagttgagatttggatcaagggttca |
35991209 |
T |
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| Q |
215 |
ggttgttttgcaagatactagtattgttactcctgagaatcaccctattcatcttcatggatatgatttctatatt |
290 |
Q |
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| T |
35991208 |
ggttgttttgcaagatactagtattgttactcctgagaatcaccctattcatcttcatggatatgatttctatatt |
35991133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 31164931 - 31164867
Alignment:
| Q |
210 |
gttcaggttgttttgcaagatactagtattgttactcctgagaatcaccctattcatcttcatgg |
274 |
Q |
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| T |
31164931 |
gttcagattgttttgcaggatactagtattgtaacagttgaggatcaccctatgcatgttcatgg |
31164867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 32272199 - 32271930
Alignment:
| Q |
14 |
catgaacaatgtgtcttttgtacttcctagcaatttttcaatcctgcaggctcataaacttggagtacaaggtgtttttacgacggattttcccacaaaa |
113 |
Q |
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| T |
32272199 |
catgaacaatgtctcttttactcttccaaacaatatttccattttgcaggctcattaccatggaatccctggagtttttaccactgattttccagcaaaa |
32272100 |
T |
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| Q |
114 |
cctcccgtgcaatttgattacaccggtaatgtaagtcgttcgttgtggcaaccgattcaagggactaaag-ttactaagttgagatttggatcaagggtt |
212 |
Q |
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| T |
32272099 |
ccacccgttaaattcgattacaccggcaacgtgagccgttccctctggcaacctgttcccgggactaaagcttac-aagttgaagtttggatcaagggtg |
32272001 |
T |
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| Q |
213 |
caggttgttttgcaagatactagtattgttactcctgagaatcaccctattcatcttcatggatatgattt |
283 |
Q |
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| T |
32272000 |
caaattgtgttgcaagataccagtattgttactcctgagaatcacccaattcaccttcatgggtatgattt |
32271930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 25093150 - 25093216
Alignment:
| Q |
219 |
gttttgcaagatactagtattgttactcctgagaatcaccctattcatcttcatggatatgatttct |
285 |
Q |
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| T |
25093150 |
gttttgcaagatactggaatgttaacacctgagaatcatcctattcatcttcatggatttaatttct |
25093216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 22603627 - 22603691
Alignment:
| Q |
219 |
gttttgcaagatactagtattgttactcctgagaatcaccctattcatcttcatggatatgattt |
283 |
Q |
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| T |
22603627 |
gttttgcaagatactagtattcttggtgctgagagtcaccctttgcatcttcatggttatgattt |
22603691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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