View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_low_28 (Length: 298)
Name: NF16281_low_28
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 24274224 - 24273937
Alignment:
| Q |
1 |
ttttatcttgtgcccacaaagaatatcatctttagccagaatttgcacccatctcactcatatgcccaagcctcatatgccacaacttcgtcatatcttc |
100 |
Q |
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| T |
24274224 |
ttttatcttatgcccacaaagaatatcatctttagccagaatttgcacccatctcactcatatgcccaagcctcatatgccacaacttcgtcatatcttc |
24274125 |
T |
|
| Q |
101 |
ttggtcaatctcagaggaagcaacaacaacaatatcagataacgtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaattacactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| ||| |||||| |
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| T |
24274124 |
ttggtcaatctcagaggaagcaacaacaacaatatcagataacgtagtaccttgtaaaaagtacaaagtactctgcttcacacctttcagaatcacactt |
24274025 |
T |
|
| Q |
201 |
gataattgtagaaaaatatgtatagctccaccttcatttttaaaactaaaccccttcttgtccaaaagactcaaagatataatattcttcg |
291 |
Q |
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| T |
24274024 |
g--aacccttg-aaaatatgtatagctccaccttcacttttaaaactaaaccccttcttgtccagaagactcaaagatataatattattcg |
24273937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 53471118 - 53471311
Alignment:
| Q |
2 |
tttatcttgtgcccacaaagaatatcatctttagccagaatttgca--cccatctcactcatatgcccaagcctcatatgccacaacttcgtcatatctt |
99 |
Q |
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||||||||||| ||| |||||| || ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
53471118 |
tttatcttgtgtccataaagaagattatctttagcaagaatttgcatccccctctcactcatatgcccaagcctcatatgccacaatttcgtcatatctt |
53471217 |
T |
|
| Q |
100 |
cttggtcaatctcagaggaagcaacaacaacaatatcagataacgtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaat |
193 |
Q |
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| T |
53471218 |
cttggtcaatctcgaaggaagcaacaacaccataatcagttagcgtagtaccttgtagaaagtacagagtacccctcttcacacctttcaaaat |
53471311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 202
Target Start/End: Original strand, 9008945 - 9009089
Alignment:
| Q |
58 |
tcatatgcccaagcctcatatgccacaacttcgtcatatcttcttggtcaatctcagaggaagcaacaacaacaatatcagataacgtagtaccttgtag |
157 |
Q |
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| T |
9008945 |
tcatatgcccaagcctcatatgccacaacttcgtcatatcttcttagtcaatatcgaaggaagaaacagcaacataatcagatagtgtaataccttgtag |
9009044 |
T |
|
| Q |
158 |
aaagtaaaaagtaccttgcttcacacctttcaaaattacacttga |
202 |
Q |
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| T |
9009045 |
aaattaaagagtacctcgcttctcaccttttagaatcacacttga |
9009089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 13417442 - 13417708
Alignment:
| Q |
15 |
cacaaagaatatcatctttagccagaatttgca-ccca-tctcactcatatgcccaagcctcatatgccacaacttcgtcatatcttcttggtcaatctc |
112 |
Q |
| |
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||||||||| || |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
13417442 |
cacaaagaagattatctttagccagaatttgcatcccactctcactcatatgcccaagcctcatatgccacaacctcgtcatatctttatggtcaatctc |
13417541 |
T |
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| Q |
113 |
agaggaagcaacaacaacaatatcagataacgtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaattacacttgataattgtaga |
212 |
Q |
| |
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||||||||||||||||| | |||||| |||||||||||||||||||| | ||||| | | ||||||||||||||||| || |||| | | | |
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| T |
13417542 |
ggaggaagcaacaacaacttaagcagatagtgtagtaccttgtagaaagtagagagtacatcgtttcacacctttcaaaatcacggttga-acccttgca |
13417640 |
T |
|
| Q |
213 |
aaaatatgtatagctccaccttcatttttaaaactaaaccccttcttgtccaaaagactcaaagatat |
280 |
Q |
| |
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|| || | || ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
13417641 |
aacatgtataactctccaccttcacttttgaaactaaaccccttcttgtccaaaagactcagagatat |
13417708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 30047773 - 30047642
Alignment:
| Q |
2 |
tttatcttgtgcccacaaagaatatcatctttagccagaatttgca--cccatctcactcatatgcccaagcctcatatgccacaacttcgtcatatctt |
99 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||| |||||||||| ||| |||||||||||| |||||||||||||||||||||||| |||| |||| |
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| T |
30047773 |
tttattttgtgcccacaaataagatcatctttagctagaatttgcatcccctactcactcatatgtccaagcctcatatgccacaacttcttcatttctt |
30047674 |
T |
|
| Q |
100 |
cttggtcaatctcagaggaagcaacaacaaca |
131 |
Q |
| |
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||| ||||||||| |||||||||||||||||| |
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| T |
30047673 |
cttagtcaatctcggaggaagcaacaacaaca |
30047642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 58 - 291
Target Start/End: Complemental strand, 28706524 - 28706293
Alignment:
| Q |
58 |
tcatatgcccaagcctcatatgccacaacttcgtcatatcttcttggtcaatctcagaggaagcaacaacaacaatatcagataacgtagtaccttgtag |
157 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || || ||||| || || ||||||||||| |
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| T |
28706524 |
tcatatgcgcaagcctcttatgccacaacttcgtcatatcttcttggtcaatcttggaggaagcaacagcagcagaatcagttagtgtcgtaccttgtag |
28706425 |
T |
|
| Q |
158 |
aaagtaaaaagtaccttgcttcacacc-tttcaaaattacacttgataattgtagaaaaatatgtatagctccaccttcatttttaaaactaaacccctt |
256 |
Q |
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|||||| | |||||| |||||||||| |||| ||| ||||||| || | | ||| ||||||| ||||| ||||| ||| |||||||||||||| |
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| T |
28706424 |
aaagtatagagtaccccgcttcacaccttttctgaatcacacttg--aacccttg-caaacatgtataactccagcttcacctttgaaactaaacccctt |
28706328 |
T |
|
| Q |
257 |
cttgtccaaaagactcaaagatataatattcttcg |
291 |
Q |
| |
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||||||||||||||||||| |||| | |||||||| |
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| T |
28706327 |
cttgtccaaaagactcaaaaatatcagattcttcg |
28706293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 27367626 - 27367707
Alignment:
| Q |
72 |
ctcatatgccacaacttcgtcatatcttcttggtcaatctcagaggaagcaacaacaacaatatcagataacgtagtacctt |
153 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||| || |||||||||||||||||| |||||||| | ||||||||| |
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|
| T |
27367626 |
ctcatatgccacaattttgtcatatcttcttggtcaatttcggaggaagcaacaacaacagaatcagatagcatagtacctt |
27367707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 30047574 - 30047515
Alignment:
| Q |
221 |
tatagctccaccttcatttttaaaactaaaccccttcttgtccaaaagactcaaagatat |
280 |
Q |
| |
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|||| ||||||||||| ||| |||||||||| |||||||||||||||||||| |||||| |
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| T |
30047574 |
tataactccaccttcacctttgaaactaaacctcttcttgtccaaaagactcagagatat |
30047515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 18726250 - 18726188
Alignment:
| Q |
91 |
tcatatcttcttggtcaatctcagaggaagcaacaacaacaatatcagataacgtagtacctt |
153 |
Q |
| |
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|||||||||||||| |||| || |||||||||||||||||| |||||||| | ||||||||| |
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|
| T |
18726250 |
tcatatcttcttggccaatttcggaggaagcaacaacaacataatcagatagcatagtacctt |
18726188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 18726308 - 18726266
Alignment:
| Q |
2 |
tttatcttgtgcccacaaagaatatcatctttagccagaattt |
44 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||| ||||| |
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|
| T |
18726308 |
tttatcttgtgcccacaaagaagatcatctttatccaaaattt |
18726266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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