View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16281_low_3 (Length: 778)

Name: NF16281_low_3
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16281_low_3
NF16281_low_3
[»] chr6 (21 HSPs)
chr6 (339-521)||(5064995-5065178)
chr6 (4-197)||(5065365-5065560)
chr6 (4-204)||(5253717-5253919)
chr6 (330-492)||(5346607-5346766)
chr6 (165-323)||(5126268-5126427)
chr6 (562-634)||(5059278-5059350)
chr6 (165-294)||(5065195-5065322)
chr6 (11-212)||(5177930-5178127)
chr6 (39-123)||(23127300-23127384)
chr6 (11-114)||(5279755-5279860)
chr6 (145-223)||(5178132-5178210)
chr6 (11-114)||(5346220-5346325)
chr6 (11-114)||(5688902-5689007)
chr6 (12-114)||(5126628-5126732)
chr6 (170-223)||(5688716-5688769)
chr6 (170-222)||(5279988-5280040)
chr6 (58-113)||(5398286-5398341)
chr6 (39-137)||(5098432-5098530)
chr6 (17-103)||(5100828-5100916)
chr6 (42-123)||(5124433-5124514)
chr6 (17-103)||(5135929-5136017)
[»] chr3 (4 HSPs)
chr3 (12-113)||(47985393-47985496)
chr3 (12-113)||(47994680-47994783)
chr3 (12-113)||(48003967-48004070)
chr3 (12-113)||(48013252-48013355)
[»] chr4 (2 HSPs)
chr4 (55-155)||(4132576-4132676)
chr4 (40-114)||(4122643-4122717)
[»] scaffold0294 (1 HSPs)
scaffold0294 (35-112)||(7878-7955)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 4e-68; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 5065178 - 5064995
Alignment:
Q  339 caatctgccttcgttcatttt-cttctgttaggctttagaaatttcatatatattcattggttctatcattgtaaaatcatcaatatatgaaaaagtttt 437  Q
    |||||||| || ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  5065178 caatctgcttttgttcatttttcttctgttaggctttagaaatttcatatgtattcgttggttctatcattgtaaaatcatcaatatatgaagaagtttt 5065079  T
Q  438 aaacattcattaccagtgtacataaaaggtatgaaaaaagttttctgaatgagaagtataaactgtagtgcgtgggttggttct 521  Q
    ||||||||||||| |||||||||||||||||||| | |||||||||||||| |||||||||||||||||| |||| ||||||||    
T  5065078 aaacattcattacgagtgtacataaaaggtatgatagaagttttctgaatgggaagtataaactgtagtgtgtggattggttct 5064995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 5065560 - 5065365
Alignment:
Q  4 ggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttat 101  Q
    ||||| |||||||||||| |||||||||||||  ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5065560 ggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtttat 5065461  T
Q  102 cttatatatgatggactgattgctgaaaaagtggaggagtgtcatgcacaagataagagtggtattgttagtagtagtgatgaaaatgaatgcttt 197  Q
    || |||||||||| ||  ||||||||||| | |||||||||||||||||||||||||| || ||||||||||||  ||||||||||||||||||||    
T  5065460 ctcatatatgatgaaccaattgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatgcttt 5065365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 5253717 - 5253919
Alignment:
Q  4 ggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttat 101  Q
    ||||| ||| |||||| | | |||||||||||  ||||| |||||||| ||||||||||||||||||||  ||||| ||||||||||||| |||||||||    
T  5253717 ggaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttat 5253816  T
Q  102 cttatatatgatggactgattgctgaaaaagtggaggagtgtcatgcacaagataagagtggtattgttagtagtagtgatgaaaatgaatgctttgtca 201  Q
    || |||||||| |  |  ||||||||||| | |||||||||||||| |||||||| || || ||||||||||||| || ||||||||||||| ||||| |    
T  5253817 ctcatatatgacgagcccattgctgaaaaggcggaggagtgtcatggacaagatatgaatgttattgttagtagtggttatgaaaatgaatgttttgtta 5253916  T
Q  202 gaa 204  Q
    |||    
T  5253917 gaa 5253919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 330 - 492
Target Start/End: Original strand, 5346607 - 5346766
Alignment:
Q  330 tgcattctgcaatctgccttcgttcatttt-cttctgttaggctttagaaatttcatatatattcattggttctatcattgtaaaatcatcaatatatga 428  Q
    |||| ||||||||||||||| ||||||||| ||||| ||||||| |||||||| ||||| |||| ||||||| |||||||||||||||||| |||    |    
T  5346607 tgcagtctgcaatctgcctttgttcatttttcttcttttaggctgtagaaattccatatgtatttattggttatatcattgtaaaatcatcgata----a 5346702  T
Q  429 aaaagttttaaacattcattaccagtgtacataaaaggtatgaaaaaagttttctgaatgagaa 492  Q
    | || ||||||||||||||||||||||||| |||||   |||| ||||||| ||||||||||||    
T  5346703 agaaattttaaacattcattaccagtgtacttaaaaaaaatgataaaagttgtctgaatgagaa 5346766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 165 - 323
Target Start/End: Complemental strand, 5126427 - 5126268
Alignment:
Q  165 attgttagtagtagtgatgaaaatgaatgctttgtcagaaaagtctctcctcaagtggcgccggttgatgacttaacagataaaagaaggaagaaaattc 264  Q
    |||||| |||||  ||| ||||| ||| |||||||||| || || |||||||||||||| ||  ||||||| ||||   |||| | || |||||||||||    
T  5126427 attgtttgtagtgctgaagaaaaggaaggctttgtcaggaaggtatctcctcaagtggctcccattgatgatttaaagcataacaaaaagaagaaaattc 5126328  T
Q  265 tcaagaggaaatggaagaca-aaaaacaatggttgggtaagtattggtgctgctagttgt 323  Q
    ||||||||| ||||||||||  |||| ||||||||| |||||||||||||||||||||||    
T  5126327 tcaagaggagatggaagacagtaaaagaatggttggataagtattggtgctgctagttgt 5126268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 562 - 634
Target Start/End: Complemental strand, 5059350 - 5059278
Alignment:
Q  562 gttttctcattgtaaaatcatcccttaagaaaagtttgaacattcactttgtaccaatgttttaaaaactgga 634  Q
    ||||||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  5059350 gttttcttatggtaaaatcatcccttaagaaaagtatgaacattcactttgtgccaatgttttaaaaactgga 5059278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 165 - 294
Target Start/End: Complemental strand, 5065322 - 5065195
Alignment:
Q  165 attgttagtagtagtgatgaaaatgaatgctttgtcagaaaagtctctcctcaagtggcgccggttgatgacttaacagataaaagaaggaagaaaattc 264  Q
    |||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||  || || |||||||||||  | || |||| |||||||| ||    
T  5065322 attgtttgtagtggtgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtggttcctgtggatgacttaac--acaacagaa-gaagaaaaatc 5065226  T
Q  265 tcaagaggaaatggaagacaa-aaaacaatg 294  Q
    || | |||||||||||||||| |||||||||    
T  5065225 tccaaaggaaatggaagacaataaaacaatg 5065195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 5177930 - 5178127
Alignment:
Q  11 cagagagtagtgtcaagtattgaacg--gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatat 108  Q
    ||||||||||| |||||||| ||||   | |||||||||||  ||||||||||||||||||| |||||| |||||||||  ||||||||||||||  |||    
T  5177930 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5178029  T
Q  109 atgatggactgattgctgaaaaagtggaggagtgtcatgcacaagataagagtggtattgttagtagtagtgatgaaaatgaatgctttgtcagaaaagt 208  Q
    |||||| ||  ||||  |||||| ||||| | || || | |||||  ||||     |||||  ||||| |||||||| ||||||||||||||||| ||||    
T  5178030 atgatgaaccaattggagaaaaaatggagcaatgccaagaacaag--aaga----aattgtgtgtagtggtgatgaagatgaatgctttgtcagagaagt 5178123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 23127384 - 23127300
Alignment:
Q  39 aacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattg 123  Q
    |||||| ||||  ||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| ||| ||||    
T  23127384 aacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatgaactaattg 23127300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 5279755 - 5279860
Alignment:
Q  11 cagagagtagtgtcaagtattgaacg--gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatat 108  Q
    ||||||||||| |||||||| ||||   | |||||||||||  ||||||||||||||||||| |||||| |||||||||  ||||||||||||||  |||    
T  5279755 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5279854  T
Q  109 atgatg 114  Q
    ||||||    
T  5279855 atgatg 5279860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 5178132 - 5178210
Alignment:
Q  145 atgcacaagataagagtggtattgttagtagtagtgatgaaaatgaatgctttgtcagaaaagtctctcctcaagtggc 223  Q
    ||||||||||| | | ||  |||||||||||| ||||||||||||||||  |||||||||| |||||||||||||||||    
T  5178132 atgcacaagattacaatgtcattgttagtagtggtgatgaaaatgaatgtgttgtcagaaatgtctctcctcaagtggc 5178210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 5346220 - 5346325
Alignment:
Q  11 cagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatat 108  Q
    |||||||| || |||||||| ||||  || |||||||||||  |||| |||||| |||||||||||||| ||||||||| |||| || ||||||| ||||    
T  5346220 cagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttatctcatat 5346319  T
Q  109 atgatg 114  Q
    ||||||    
T  5346320 atgatg 5346325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 5689007 - 5688902
Alignment:
Q  11 cagagagtagtgtcaagtattgaacg--gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatat 108  Q
    ||||||||||| |||||||| ||||   | |||||||||||  |||||  |||||||||||| |||||| |||||||||  ||||||||||||||  |||    
T  5689007 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5688908  T
Q  109 atgatg 114  Q
    ||||||    
T  5688907 atgatg 5688902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 5126732 - 5126628
Alignment:
Q  12 agagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatata 109  Q
    |||||||||| |||||||| |||   || |||||||| ||  |||||||||||||| |||| |||||| ||||||||| |||| | |||||||| |||||    
T  5126732 agagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatata 5126633  T
Q  110 tgatg 114  Q
    |||||    
T  5126632 tgatg 5126628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 5688769 - 5688716
Alignment:
Q  170 tagtagtagtgatgaaaatgaatgctttgtcagaaaagtctctcctcaagtggc 223  Q
    ||||||| ||||||||||||||||  |||||||||| |||||||||||||||||    
T  5688769 tagtagtggtgatgaaaatgaatgtgttgtcagaaatgtctctcctcaagtggc 5688716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 5279988 - 5280040
Alignment:
Q  170 tagtagtagtgatgaaaatgaatgctttgtcagaaaagtctctcctcaagtgg 222  Q
    ||||||| ||||||||||||||||  |||||||||| ||||||||||||||||    
T  5279988 tagtagtggtgatgaaaatgaatgtgttgtcagaaatgtctctcctcaagtgg 5280040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 5398286 - 5398341
Alignment:
Q  58 ttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgat 113  Q
    ||||||| ||||||| |||| ||||||||| |||||||||||||||| ||||||||    
T  5398286 ttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 5098432 - 5098530
Alignment:
Q  39 aacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattgctgaaaaagtggag 137  Q
    |||||||||||  |  |||||||||| |||||  ||||| ||||||| | |||| ||||||||||  ||||||||| ||  |||| |||||||||||||    
T  5098432 aacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtatatgatgaacaaattggtgaaaaagtggag 5098530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 5100916 - 5100828
Alignment:
Q  17 gtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatct 103  Q
    ||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||  ||||| ||||||| | |||| ||||||||||    
T  5100916 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatct 5100828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 5124514 - 5124433
Alignment:
Q  42 aaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattg 123  Q
    |||||||| |||||| |||||||| ||||  | ||| ||||||||  ||||||| | ||| |||||||||||| ||||||||    
T  5124514 aaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtatattatatatgatgaactgattg 5124433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 5136017 - 5135929
Alignment:
Q  17 gtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatct 103  Q
    ||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||  ||||| ||||||| | |||| ||||||||||    
T  5136017 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatct 5135929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 47985496 - 47985393
Alignment:
Q  12 agagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatata 109  Q
    |||||||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||||||||| |||||||||||| | ||||||||||| ||||    
T  47985496 agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 47985397  T
Q  110 tgat 113  Q
    ||||    
T  47985396 tgat 47985393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 47994783 - 47994680
Alignment:
Q  12 agagagtagtgtcaagtattgaa--cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatata 109  Q
    |||||||||| |||||||| |||  ||| |||||||||||  | |||||||||||||||||||||||| |||||||||||| | ||||||||||| ||||    
T  47994783 agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 47994684  T
Q  110 tgat 113  Q
    ||||    
T  47994683 tgat 47994680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 48004070 - 48003967
Alignment:
Q  12 agagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatata 109  Q
    |||||||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||||||||| |||||||||||| | ||||||||||| ||||    
T  48004070 agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 48003971  T
Q  110 tgat 113  Q
    ||||    
T  48003970 tgat 48003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 48013355 - 48013252
Alignment:
Q  12 agagagtagtgtcaagtattgaa--cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatata 109  Q
    |||||||||| |||||||| |||  ||| |||||||||||  | |||||||||||||||||||||||| |||||||||||| | ||||||||||| ||||    
T  48013355 agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 48013256  T
Q  110 tgat 113  Q
    ||||    
T  48013255 tgat 48013252  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 4132676 - 4132576
Alignment:
Q  55 ttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattgctgaaaaagtggaggagtgtcatgcacaaga 154  Q
    |||||||||||| |||  ||||| |||||| || |||| |||||||||| |||||||||| ||  |||| ||||||  ||| | | ||||||||||||||    
T  4132676 ttgttgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatatatgatgaaccaattggtgaaaatttggggcaatgtcatgcacaaga 4132577  T
Q  155 t 155  Q
    |    
T  4132576 t 4132576  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 4122717 - 4122643
Alignment:
Q  40 acaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 114  Q
    ||||||||||  |||||||||||||||  ||  ||||| |||||| || |||| |||||||||| ||||||||||    
T  4122717 acaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgatg 4122643  T

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Target: scaffold0294 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 7955 - 7878
Alignment:
Q  35 cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatga 112  Q
    |||||||||||||||  ||||||||||||||| | | |||||| ||| |||    |||||| ||||||||||||||||    
T  7955 cggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga 7878  T

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