View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16281_low_31 (Length: 275)
Name: NF16281_low_31
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 14307797 - 14307535
Alignment:
| Q |
1 |
cgatggttttgcaaactttgacattttcttgaaggaatataattgttttgcgcgtgacaaagagagaaacaagttgtttggaatataataatttttgttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14307797 |
cgatggttttgcaaactttgacattttcttgaaggaatataattgatttgcgtgtgaccaaaagagaaacaagttgtttggaatataataatttttgttt |
14307698 |
T |
|
| Q |
101 |
gggtcttagaggtttcataatagtctgggatatttgtagcttgtaagacgtggagaacaagtgaagtgattaatttcgaaacaaatcaattgttgttggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14307697 |
gggtcttagaggtttcataatagtctgggatatttgtagcttgtaagacgtggagaacaagtaaagtgattaatttcgaaacaaatcaattgttgttggc |
14307598 |
T |
|
| Q |
201 |
taatgattcgcatgaatttcgtaacaaatcttttatttattttcttaaaaccaatcttcatct |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14307597 |
taatgattcgcatgaatttcgtaacaaatcttttatttattttcttaaaaccaatcttcatct |
14307535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University