View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16281_low_34 (Length: 261)

Name: NF16281_low_34
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16281_low_34
NF16281_low_34
[»] chr3 (4 HSPs)
chr3 (12-230)||(51648870-51649101)
chr3 (15-145)||(8505207-8505350)
chr3 (116-168)||(4866117-4866169)
chr3 (116-168)||(55039882-55039934)
[»] chr1 (4 HSPs)
chr1 (12-230)||(20604225-20604456)
chr1 (116-168)||(30402650-30402702)
chr1 (116-168)||(30409207-30409259)
chr1 (116-168)||(35164410-35164462)
[»] chr8 (2 HSPs)
chr8 (12-229)||(30848083-30848313)
chr8 (116-168)||(11144352-11144404)
[»] chr5 (1 HSPs)
chr5 (94-220)||(3004628-3004754)
[»] chr4 (3 HSPs)
chr4 (127-220)||(54654663-54654756)
chr4 (184-227)||(1065629-1065672)
chr4 (96-147)||(42094340-42094391)
[»] scaffold0390 (1 HSPs)
scaffold0390 (183-227)||(984-1028)
[»] scaffold0786 (1 HSPs)
scaffold0786 (183-227)||(2452-2496)
[»] chr2 (1 HSPs)
chr2 (183-227)||(22140252-22140296)
[»] chr7 (1 HSPs)
chr7 (116-168)||(13949969-13950021)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 51648870 - 51649101
Alignment:
Q  12 aaaggccaccaggcttagattgacgttttcagttccaaggaca--tgaaaatgaggaagaaagagcactatctattagagtctgtt-----------atg 98  Q
    ||||||||| ||| |||||||| ||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||           |||    
T  51648870 aaaggccactaggattagattgtcgtttccagttccaaggacagatgaaaatgaggaagaaagagcactatctattagagtctgttctacatgtattatg 51648969  T
Q  99 tctcccattttcatatgatttcaagttgcaagtaatatgaattgagttttaagatggttttctatgactgtaaaattgcatttagagaacattgtttgcc 198  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  51648970 tctcccattttcatacgatttcaagttgcaagtaatatgaattgagttttaagatggttttctttgactgcaaaattgcatttagagaacattgtttgcc 51649069  T
Q  199 gatttgatcccatctgaaagaagtgtctccat 230  Q
    ||||||||||||||||||||||||||||||||    
T  51649070 gatttgatcccatctgaaagaagtgtctccat 51649101  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 8505350 - 8505207
Alignment:
Q  15 ggccaccaggcttagattgacgttttcagttccaaggaca--tgaaaatgaggaagaaagagcactatctattagagtctg-----------ttatgtct 101  Q
    |||||| |||||||||||| ||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||           ||||||||    
T  8505350 ggccactaggcttagattgtcgtttccagttccaaggacagatgaaaatgaggaagaaagagcactatctattagagtctgttctatatgtattatgtct 8505251  T
Q  102 cccattttcatatgatttcaagttgcaagtaatatgaattgagt 145  Q
    || ||||||||| |||||||||||||||||||||||||||||||    
T  8505250 cctattttcatacgatttcaagttgcaagtaatatgaattgagt 8505207  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 4866117 - 4866169
Alignment:
Q  116 atttcaagttgcaagtaatatgaattgagttttaagatggttttctatgactg 168  Q
    ||||||| ||||||||||| | |||||||||||||| | ||||||| ||||||    
T  4866117 atttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactg 4866169  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 55039934 - 55039882
Alignment:
Q  116 atttcaagttgcaagtaatatgaattgagttttaagatggttttctatgactg 168  Q
    ||||||| ||||||||||| | |||||||||||||| | ||||||| ||||||    
T  55039934 atttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactg 55039882  T

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Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 20604225 - 20604456
Alignment:
Q  12 aaaggccaccaggcttagattgacgttttcagttccaaggaca--tgaaaatgaggaagaaagagcactatctattagagtctgtt-----------atg 98  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||           |||    
T  20604225 aaaggccactaggcttagattgtcgtttccagttccaaggacagatgaaaatgaggaagaaagagcactatctattagagtttgttctacatgtattatg 20604324  T
Q  99 tctcccattttcatatgatttcaagttgcaagtaatatgaattgagttttaagatggttttctatgactgtaaaattgcatttagagaacattgtttgcc 198  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |    
T  20604325 tctcccattttcatacgatttcaagttgcaagtaatatgaattgagttttaagatggttttctttgactgcaaaattgcatttagagaacattgtttgtc 20604424  T
Q  199 gatttgatcccatctgaaagaagtgtctccat 230  Q
    ||||||||||||||||||||||| ||||||||    
T  20604425 gatttgatcccatctgaaagaagcgtctccat 20604456  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 30402702 - 30402650
Alignment:
Q  116 atttcaagttgcaagtaatatgaattgagttttaagatggttttctatgactg 168  Q
    ||||||| ||||||||||| | |||||||||||||| | ||||||| ||||||    
T  30402702 atttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactg 30402650  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 30409259 - 30409207
Alignment:
Q  116 atttcaagttgcaagtaatatgaattgagttttaagatggttttctatgactg 168  Q
    ||||||| ||||||||||| | |||||||||||||| | ||||||| ||||||    
T  30409259 atttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactg 30409207  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 35164410 - 35164462
Alignment:
Q  116 atttcaagttgcaagtaatatgaattgagttttaagatggttttctatgactg 168  Q
    ||||||| ||||||||||| | |||||||||||||| | ||||||| ||||||    
T  35164410 atttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactg 35164462  T

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Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 30848313 - 30848083
Alignment:
Q  12 aaaggccaccaggcttagattgacgttttcagttccaaggac--atgaaaatgaggaagaaagagcactatctattagagtctgtt-----------atg 98  Q
    ||||||||| |||||||||||| || || || ||||||||||  | |||||||||||| ||| |||||||||||||||||||||||           |||    
T  30848313 aaaggccactaggcttagattgtcgcttccacttccaaggactgaggaaaatgaggaacaaaaagcactatctattagagtctgttctacatgtattatg 30848214  T
Q  99 tctcccattttcatatgatttcaagttgcaagtaatatgaattgagttttaagatggttttctatgactgtaaaattgcatttagagaacattgtttgcc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||    
T  30848213 tctcccattttcatatgatttcaagttgcaagtaatatgaattgagttttaagatggttttctttgactgcaaaattgcaattagagaacattgtttgcc 30848114  T
Q  199 gatttgatcccatctgaaagaagtgtctcca 229  Q
    ||||||||||||||| |||||||||||||||    
T  30848113 gatttgatcccatctaaaagaagtgtctcca 30848083  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 11144352 - 11144404
Alignment:
Q  116 atttcaagttgcaagtaatatgaattgagttttaagatggttttctatgactg 168  Q
    ||||||| ||||||||||| | |||||||||||||| | ||||||| ||||||    
T  11144352 atttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactg 11144404  T

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Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 3004628 - 3004754
Alignment:
Q  94 ttatgtctcccattttcatatgatttcaagttgcaagtaatatgaattgagttttaagatggttttctatgactgtaaaattgcatttagagaacattgt 193  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| ||||||  | |||||||| ||||||||||||    
T  3004628 ttatgtctcccattttcatattatatcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgcgatattgcattaagagaacattgt 3004727  T
Q  194 ttgccgatttgatcccatctgaaagaa 220  Q
    |||||||||| |||| |||||||||||    
T  3004728 ttgccgatttaatcctatctgaaagaa 3004754  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 54654663 - 54654756
Alignment:
Q  127 caagtaatatgaattgagttttaagatggttttctatgactgtaaaattgcatttagagaacattgtttgccgatttgatcccatctgaaagaa 220  Q
    ||||||||||||||||||||||||||| ||||||| |||||   | |||| ||  ||||||||||||||| |||||| ||||||||||||||||    
T  54654663 caagtaatatgaattgagttttaagatagttttctttgactacgatattgtatcaagagaacattgtttgtcgatttaatcccatctgaaagaa 54654756  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 1065672 - 1065629
Alignment:
Q  184 agaacattgtttgccgatttgatcccatctgaaagaagtgtctc 227  Q
    |||||| ||||||||||||||||||||||| |||||||||||||    
T  1065672 agaacaatgtttgccgatttgatcccatctaaaagaagtgtctc 1065629  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 42094391 - 42094340
Alignment:
Q  96 atgtctcccattttcatatgatttcaagttgcaagtaatatgaattgagttt 147  Q
    |||||| |||||||||||| ||||||||||||||||||| | ||||||||||    
T  42094391 atgtcttccattttcatattatttcaagttgcaagtaatttaaattgagttt 42094340  T

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Target: scaffold0390 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 984 - 1028
Alignment:
Q  183 gagaacattgtttgccgatttgatcccatctgaaagaagtgtctc 227  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  984 gagaacaatgtttgccgatttgatcccatctgaaagaagtgtctc 1028  T

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Target: scaffold0786 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0786
Description:

Target: scaffold0786; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 2452 - 2496
Alignment:
Q  183 gagaacattgtttgccgatttgatcccatctgaaagaagtgtctc 227  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||    
T  2452 gagaacaatgttttccgatttgatcccatctgaaagaagtgtctc 2496  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 22140296 - 22140252
Alignment:
Q  183 gagaacattgtttgccgatttgatcccatctgaaagaagtgtctc 227  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||    
T  22140296 gagaacaatgtttgccgatttgatcccatccgaaagaagtgtctc 22140252  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 13949969 - 13950021
Alignment:
Q  116 atttcaagttgcaagtaatatgaattgagttttaagatggttttctatgactg 168  Q
    ||||||| ||||||||||| | |||||||||||||| | ||||||| ||||||    
T  13949969 atttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactg 13950021  T

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