View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_low_37 (Length: 257)
Name: NF16281_low_37
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 55573022 - 55573276
Alignment:
| Q |
1 |
ttcatcgttggagcctatgtttcgaaatcggtttatgcacttcctgaagtctattcacacattcagaagaaaaattccttttgacagtctgtacttttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55573022 |
ttcatcgttggagcctatgtttcgaaatcggtttatgcacttcctgaagtctattcacacattcagaagaaaaattccttttgacagtctgtacttttga |
55573121 |
T |
|
| Q |
101 |
tcatataagcatcatcaaccataacatacaacaataaaccattttccaaaggcatgaactttgctagagtttcaatggcaggttcatgtttcaccaaact |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55573122 |
tcatataagcatcatcaaccattacatacaacaataaaccattttccaaaggcatgaactttgctagagtttcaatggcaggttcatgtttcaccaaact |
55573221 |
T |
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| Q |
201 |
tcgcctgcgaaggtctaagagtaataaacctttaccagagccttctccttcatct |
255 |
Q |
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| T |
55573222 |
tcgcctgcgaaggtctaagagtaataaacctttaccagagccttctccttcatct |
55573276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 33035492 - 33035633
Alignment:
| Q |
5 |
tcgttggagcctatgtttcgaaatcggtttatgcacttcctgaagtctattcacacattcagaagaaaaattccttttgacagtctgtacttttgatcat |
104 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||| | ||||||||||||||| |
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| T |
33035492 |
tcgtaggagcctatgtttcgaaatcggtttatgcacttcctgaagtcaattcacacattctgaagaaaaattcctttttacattttgtacttttgatcat |
33035591 |
T |
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| Q |
105 |
ataagcatcatcaaccataacatacaacaataaaccattttc |
146 |
Q |
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| T |
33035592 |
ataagcatcatcaaccacaacacacaacaataaaccattttc |
33035633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 1359727 - 1359787
Alignment:
| Q |
141 |
attttccaaaggcatgaactttgctagagtttcaatggcaggttcatgtttcaccaaactt |
201 |
Q |
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| T |
1359727 |
attttccaaagacatgaactttgctagagtttcaatggcaggttcatgtttcacgaaactt |
1359787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 30845315 - 30845167
Alignment:
| Q |
5 |
tcgttggagcctatgtttcgaaatcggtttatgcacttcctgaagtctatt--cacacattcagaagaaaaattccttttgacagtctgtacttttgatc |
102 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||| | || ||||||||||| |
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| T |
30845315 |
tcgttggagcctatgtttcaaaatcggtttatgcacttcctcaagtcaactcacacacattcagaagaaaaattcctttcaagagattgtacttttga-- |
30845218 |
T |
|
| Q |
103 |
atataag---catcatcaaccataacatacaacaataaaccattttccaaa |
150 |
Q |
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||||||| |||||||||||| |||| ||||||||||||| ||||||||| |
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| T |
30845217 |
atataagcatcatcatcaaccacaacacacaacaataaacctttttccaaa |
30845167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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