View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_low_39 (Length: 250)
Name: NF16281_low_39
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 68 - 246
Target Start/End: Original strand, 37271359 - 37271542
Alignment:
| Q |
68 |
tttaagtaaatttgtgaacgtgatatttatttaatttctaataatgagctaaatgacaatcatat-----ctaaatatcagaaactagccatccatatga |
162 |
Q |
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| T |
37271359 |
tttaagtaaatttgtgaacgtgatatttatttaatttctaataatgagctaaatgacaattatatattctctaaatatcagaaactagccatccatatga |
37271458 |
T |
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| Q |
163 |
tgccttaagaaagattgacttatgaagtgcaagctttacatatcaatttggttgatgactctagtctctagtataaagttagat |
246 |
Q |
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| T |
37271459 |
tgccttaagaaagattgacttatgaagtgcaagctttacatatcaatttggttgatgactctagtctctagtataaagttagat |
37271542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 37271265 - 37271321
Alignment:
| Q |
16 |
atgattaagttgcacgtaaatgatatttgcgtccataccaacacaaatgtaatttaa |
72 |
Q |
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| T |
37271265 |
atgattaagttgcacgtaaatgatatttgcgtccataccaacacaaatgtaatttaa |
37271321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 37262776 - 37262829
Alignment:
| Q |
16 |
atgattaagttgcacgtaaatgatatttgcgtccataccaacacaaatgtaatt |
69 |
Q |
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| T |
37262776 |
atgattaagttgcacgtaaatgagatttaggaccataccaacacaaatgtaatt |
37262829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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