View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16281_low_4 (Length: 552)

Name: NF16281_low_4
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16281_low_4
NF16281_low_4
[»] scaffold0003 (2 HSPs)
scaffold0003 (22-536)||(191506-192017)
scaffold0003 (89-238)||(181753-181902)
[»] chr3 (6 HSPs)
chr3 (22-264)||(11818486-11818730)
chr3 (300-536)||(11818736-11818972)
chr3 (84-172)||(41758370-41758458)
chr3 (200-258)||(41758296-41758354)
chr3 (339-421)||(41758169-41758253)
chr3 (89-210)||(11374545-11374666)
[»] scaffold0316 (2 HSPs)
scaffold0316 (40-421)||(6703-7078)
scaffold0316 (12-73)||(6634-6695)
[»] chr6 (2 HSPs)
chr6 (72-421)||(11973875-11974209)
chr6 (22-73)||(11974257-11974308)
[»] scaffold0356 (2 HSPs)
scaffold0356 (84-258)||(3976-4149)
scaffold0356 (339-421)||(3845-3929)
[»] chr8 (7 HSPs)
chr8 (84-258)||(14106553-14106725)
chr8 (84-172)||(33856388-33856476)
chr8 (184-258)||(7781780-7781854)
chr8 (184-258)||(7831054-7831128)
chr8 (200-258)||(33856314-33856372)
chr8 (339-421)||(33856187-33856271)
chr8 (339-421)||(14106421-14106505)
[»] chr5 (1 HSPs)
chr5 (91-258)||(2255803-2255975)
[»] chr4 (5 HSPs)
chr4 (91-258)||(37525284-37525456)
chr4 (84-172)||(31926593-31926681)
chr4 (105-231)||(14289212-14289338)
chr4 (200-258)||(31926697-31926755)
chr4 (339-421)||(31926798-31926882)
[»] chr1 (3 HSPs)
chr1 (84-317)||(16046764-16047001)
chr1 (111-258)||(28968299-28968446)
chr1 (339-421)||(16046987-16047070)
[»] scaffold0012 (1 HSPs)
scaffold0012 (91-258)||(55199-55372)
[»] scaffold0796 (1 HSPs)
scaffold0796 (89-172)||(10-93)


Alignment Details
Target: scaffold0003 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 22 - 536
Target Start/End: Original strand, 191506 - 192017
Alignment:
Q  22 tttcaaaattttagtataaatctcgaaattgagtgagaattttgaaaccaaatgtatagcagtgatatgaaaattatgagttgtaactaaaaatggtgta 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  191506 tttcaaaattttagtataaatctcgaaattgagtgagaattttgaaaccaaatgtatagcagtgatatgaaaattatgagttgtaactaaaaatgatgta 191605  T
Q  122 aaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaattacgnnnnnnnttcccttaatttatggatgtagtaattgataattaaat 221  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  191606 aaaagtgtgaacctcaaacacaatatttatagcaaacatgtacgaagcaattacgaaaaaaattcccttaatttatggatgtagtaattgataattaaat 191705  T
Q  222 tgtacattaattatcaacaatttgtatgattaaaattgaaaagnnnnnnncaatactcatgatatttttaggggaaacaaatactcatgatgtacaacat 321  Q
    |||||||||||||||||||||||||||||||||||||||||||        |||||||||||| |||||||||||||||||||||||||||||   ||||    
T  191706 tgtacattaattatcaacaatttgtatgattaaaattgaaaagaaaaaaa-aatactcatgatttttttaggggaaacaaatactcatgatgt---acat 191801  T
Q  322 ctttatt-nnnnnnnnngtactcatgatgtacatatctatttaannnnnnnnatttaaatgtgtcaaaaattgtaaatgtgttcaaaaatcaaatgtata 420  Q
    |||||||          ||||||||||||||||| ||||||||         |||||||||||| |||||||||||||||||||||||||||||||||||    
T  191802 ctttattaaaaaaaaaagtactcatgatgtacatctctatttatttttttttatttaaatgtgtaaaaaattgtaaatgtgttcaaaaatcaaatgtata 191901  T
Q  421 annnnnnnncatgaatgtagaaaataatttaacttatgagtttgtgaaaatgacatagctcatgttaatatcatnnnnnnntgagacgaaaggtgtgcta 520  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  191902 attttttttcatgaatgtagaaaataatttaacttatgagtttgtgaaaatgacatagctcatgttaatatcataaaaaaatgagacgaaaggtgtgcta 192001  T
Q  521 agtttaatgtagtaat 536  Q
    ||||||||| ||||||    
T  192002 agtttaatgcagtaat 192017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 238
Target Start/End: Original strand, 181753 - 181902
Alignment:
Q  89 tgaaaattatgagttgtaactaaaaatggtgtaaaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaattacgnnnnnnnttccc 188  Q
    ||||| || |||||||||||| |||| | ||| |||| |||| | ||||||||||||||||||||  ||||||||  ||||||| |         |||||    
T  181753 tgaaatttgtgagttgtaactcaaaacgttgtgaaaattgtgggtctcaaacacaatatttatagtcaacatgtattaagcaatcaaaaaaattattccc 181852  T
Q  189 ttaatttatggatgtagtaattgataattaaattgtacattaattatcaa 238  Q
    |||||||||||||||||||||||| ||| ||||  |||| ||||| ||||    
T  181853 ttaatttatggatgtagtaattgaaaataaaatgatacaataattttcaa 181902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 264
Target Start/End: Original strand, 11818486 - 11818730
Alignment:
Q  22 tttcaaaattttagtataaatctcgaaattgagtgagaattttgaaaccaaatgtatagcagtgatatgaaaattatgagttgtaactaaaaatggtgta 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||    
T  11818486 tttcaaaattttagtataaatctcgaaattgagtgagaattttgaaaccaaaagtatagcagtgatataaaaattatgagttgtaactgaaaatggtgta 11818585  T
Q  122 aaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaattacg--nnnnnnnttcccttaatttatggatgtagtaattgataattaa 219  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||         | ||||||||||||||||||||||||||||||||||    
T  11818586 aaaagtgtgagtctcaaacacaatatttatagcaaacatgtacgaagcaattacgaaaaaaaattccccttaatttatggatgtagtaattgataattaa 11818685  T
Q  220 attgtacattaattatcaacaatttgtatgattaaaattgaaaag 264  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  11818686 attgtacaataattatcaacaatttgtatgattaaaattgaaaag 11818730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 300 - 536
Target Start/End: Original strand, 11818736 - 11818972
Alignment:
Q  300 aaatactcatgatgtacaacatctttattnnnnnnnnngtactcatgatgtacatatctatttaannnnnnnnatttaaatgtgtcaaaaattgtaaatg 399  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||| |||||||||        |||||||||||| ||||||||||||||    
T  11818736 aaatactcatgatgtacaacatctttattaaaaaaaaagtactcatgatgtacatctctatttaattttttttatttaaatgtgtaaaaaattgtaaatg 11818835  T
Q  400 tgttcaaaaatcaaatgtataannnnnnnncatgaatgtagaaaataatttaacttatgagtttgtgaaaatgacatagctcatgttaatatcatnnnnn 499  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  11818836 tgttcaaaaatcaaatgtataattttttttcatgaatgtagaaaataatttaacttatgagtttgtgaaaatgacatagctcatgttaatatcataaaaa 11818935  T
Q  500 nntgagacgaaaggtgtgctaagtttaatgtagtaat 536  Q
      ||||||||||||||||||||||||||||| |||||    
T  11818936 aatgagacgaaaggtgtgctaagtttaatgttgtaat 11818972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 41758458 - 41758370
Alignment:
Q  84 tgatatgaaaattatgagttgtaactaaaaatggtgtaaaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaat 172  Q
    |||| ||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||| | || ||||| ||||||||    
T  41758458 tgatgtgaaaattatgagttataactcaaaatgatgtgaaaagtgtgagcctcaaacacaatatttataaccaatatgtatgaagcaat 41758370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 41758354 - 41758296
Alignment:
Q  200 atgtagtaattgataattaaattgtacattaattatcaacaatttgtatgattaaaatt 258  Q
    ||||||||||||| ||| || | ||||||||||||||||||||| ||||||||||||||    
T  41758354 atgtagtaattgaaaataaattggtacattaattatcaacaattagtatgattaaaatt 41758296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 421
Target Start/End: Complemental strand, 41758253 - 41758169
Alignment:
Q  339 tactcatgatgtacatatctatttaannnnnnnnatttaaatgtgtcaaaaa--ttgtaaatgtgttcaaaaatcaaatgtataa 421  Q
    |||||||||||||||| |||||||||        |||||||||||| |||||  ||||||||||||||||||| |||||||||||    
T  41758253 tactcatgatgtacatttctatttaattttttttatttaaatgtgtaaaaaaaattgtaaatgtgttcaaaaaccaaatgtataa 41758169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 11374545 - 11374666
Alignment:
Q  89 tgaaaattatgagttgtaactaaaaatggtgtaaaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaattacgnnnnnnnttccc 188  Q
    ||||| || |||||||||||| ||||   ||| |||| || ||| ||||||||||||||||||||  ||||||||| ||||||| |         |||||    
T  11374545 tgaaatttgtgagttgtaactcaaaacattgtgaaaattgcgagtctcaaacacaatatttatagtcaacatgtaccaagcaatcaaaaaaattattccc 11374644  T
Q  189 ttaatttatggatgtagtaatt 210  Q
    ||||||||||||||||||||||    
T  11374645 ttaatttatggatgtagtaatt 11374666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 116; Significance: 9e-59; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 40 - 421
Target Start/End: Original strand, 6703 - 7078
Alignment:
Q  40 aatctcgaaattgagtgagaattttgaaaccaaa---------tgtatagcagtgatatgaaaattatgagttgtaactaaaaatggtgtaaaaagtgtg 130  Q
    |||||||||||||||||||||| |||||| ||||         |||||| |||||| ||||||||| |||||||||||| ||||||||||||||||||||    
T  6703 aatctcgaaattgagtgagaatgttgaaaacaaaaaagtacaatgtataacagtgaaatgaaaattgtgagttgtaacttaaaatggtgtaaaaagtgtg 6802  T
Q  131 agcctcaaacacaatatttatagcaaacatgtacgaagcaattacgnnnnnnnttcccttaatttatggatgtagtaattgataattaaattgtacatta 230  Q
    |||||||||||||||||||||||| |||||||| |||||||| ||        |||        || ||||||||||||||| |||||||| ||||||||    
T  6803 agcctcaaacacaatatttatagccaacatgtatgaagcaatcacaaaaaaaattc--------tacggatgtagtaattgacaattaaatggtacatta 6894  T
Q  231 attatcaacaatttgtatgattaaaattgaaaagnnnnnnncaatactcatgatatttttaggggaaacaaatactcatgatgtacaacatctttattnn 330  Q
    ||||||||||||||||||||||||| | ||||          |||||||||||| |||||||||||||||||||||||| ||||   |||||||||||      
T  6895 attatcaacaatttgtatgattaaattagaaa---gaaaaaaaatactcatgatttttttaggggaaacaaatactcataatgt---acatctttattaa 6988  T
Q  331 nnnnnnngtactcatgatgtacatatctatttaannnnnnnnatttaaatgtgtcaaaaattgtaaatgtgttcaaaaatcaaatgtataa 421  Q
            ||| |||||||||||| |||||||||        |||||||||||| |||||||||||||||||||||||| |||||||||||    
T  6989 aaaaaaa-tacgcatgatgtacatctctatttaattttttttatttaaatgtgtaaaaaattgtaaatgtgttcaaaaaccaaatgtataa 7078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 6634 - 6695
Alignment:
Q  12 tcgaagaaaatttcaaaattttagtataaatctcgaaattgagtgagaattttgaaaccaaa 73  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||    
T  6634 tcgaaaaaaatttcaaaattttagtatgaatctcgaaattgagttagaatgttgaaaccaaa 6695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 6e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 72 - 421
Target Start/End: Complemental strand, 11974209 - 11973875
Alignment:
Q  72 aatgtatagcagtgatatgaaaattatgagttgtaactaaaaatggtgtaaaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaa 171  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||   ||||| |||||||||||||||| |||||||    
T  11974209 aatgtatagcagtgatatgaaaattgtgagttgtaacttaaaatggtgtaaaaagtgtgagcctcaataccaata-ttatagcaaacatgtatgaagcaa 11974111  T
Q  172 ttacgnnnnnnnttcccttaatttatggatgtagtaattgataattaaattgtacattaattatcaacaatttgtatgattaaaattgaaaagnnnnnnn 271  Q
    | ||        |||        |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||           
T  11974110 tcacaaaaaaaattc--------tatggatgtagtaattgacaattaaattgtacattaattatcaacaatttgtatgatt-aaattaaaaagaaaaaa- 11974021  T
Q  272 caatactcatgatatttttaggggaaacaaatactcatgatgtacaacatctttattnnnnnnnnngtactcatgatgtacatatctatttaa--nnnnn 369  Q
     |||||||||||| |||||||||||||||||||||||||||||    ||||||||||          |||||||||||||||| |||||||||           
T  11974020 -aatactcatgatttttttaggggaaacaaatactcatgatgt---gcatctttattaaaaaaaa--tactcatgatgtacatctctatttaattttttt 11973927  T
Q  370 nnnatttaaatgtgtcaaaaattgtaaatgtgttcaaaaatcaaatgtataa 421  Q
       |||||||||||| |||||||||||||||||||||||| |||||||||||    
T  11973926 tttatttaaatgtgtaaaaaattgtaaatgtgttcaaaaaccaaatgtataa 11973875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 11974308 - 11974257
Alignment:
Q  22 tttcaaaattttagtataaatctcgaaattgagtgagaattttgaaaccaaa 73  Q
    ||||||||||||||||| |||||||||||||||| ||||| |||||||||||    
T  11974308 tttcaaaattttagtatgaatctcgaaattgagttagaatgttgaaaccaaa 11974257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 84 - 258
Target Start/End: Complemental strand, 4149 - 3976
Alignment:
Q  84 tgatatgaaaattatgagttgtaactaaaaatggtgtaaaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaattacgnnnnnnn 183  Q
    |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||||||| |||||||||||| | || |||||||||||||| ||            
T  4149 tgatgtgaaaattatgagttataactcaaaatgatgtgaaaagtgtgagcctcaaatacaatatttataaccaatatgtacgaagcaatcac-aaaaaat 4051  T
Q  184 ttcccttaatttatggatgtagtaattgataattaaattgtacattaattatcaacaatttgtatgattaaaatt 258  Q
    ||||||||||||||||||||||||||||| ||| || | | ||||||||||||||||||| ||||||||||||||    
T  4050 ttcccttaatttatggatgtagtaattgaaaataaattggaacattaattatcaacaattagtatgattaaaatt 3976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 421
Target Start/End: Complemental strand, 3929 - 3845
Alignment:
Q  339 tactcatgatgtacatatctatttaannnnnnnnatttaaatgtgtcaaaaa--ttgtaaatgtgttcaaaaatcaaatgtataa 421  Q
    ||||||| |||||||| |||||||||        |||||||||||| |||||  ||||||||||||||||||| |||||||||||    
T  3929 tactcataatgtacatttctatttaattttttttatttaaatgtgtaaaaaaaattgtaaatgtgttcaaaaaccaaatgtataa 3845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 84 - 258
Target Start/End: Complemental strand, 14106725 - 14106553
Alignment:
Q  84 tgatatgaaaattatgagttgtaactaaaaatggtgtaaaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaattacgnnnnnnn 183  Q
    |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||||||| |||||||||||| | || |||||||||||||| ||            
T  14106725 tgatgtgaaaattatgagttataactcaaaatgatgtgaaaagtgtgagcctcaaatacaatatttataaccaatatgtacgaagcaatcac--aaaaat 14106628  T
Q  184 ttcccttaatttatggatgtagtaattgataattaaattgtacattaattatcaacaatttgtatgattaaaatt 258  Q
    ||||||||||||||||||||||||||||| ||| || | | ||||||||||||||||||| ||||||||||||||    
T  14106627 ttcccttaatttatggatgtagtaattgaaaataaattggaacattaattatcaacaattagtatgattaaaatt 14106553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 33856476 - 33856388
Alignment:
Q  84 tgatatgaaaattatgagttgtaactaaaaatggtgtaaaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaat 172  Q
    |||| ||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||| | || ||||| ||||||||    
T  33856476 tgatgtgaaaattatgagttataactcaaaatgatgtgaaaagtgtgagcctcaaacacaatatttataaccaatatgtatgaagcaat 33856388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 7781780 - 7781854
Alignment:
Q  184 ttcccttaatttatggatgtagtaattgataattaaattgtacattaattatcaacaatttgtatgattaaaatt 258  Q
    ||||||||||||||||||  ||||||||| ||| |||| ||||||||||| |||| ||||| |||||||||||||    
T  7781780 ttcccttaatttatggatagagtaattgaaaataaaatggtacattaattttcaaaaatttatatgattaaaatt 7781854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 7831054 - 7831128
Alignment:
Q  184 ttcccttaatttatggatgtagtaattgataattaaattgtacattaattatcaacaatttgtatgattaaaatt 258  Q
    ||||||||||||||||||  ||||||||| ||| |||| ||||||||||| |||| ||||| |||||||||||||    
T  7831054 ttcccttaatttatggatagagtaattgaaaataaaatggtacattaattttcaaaaatttatatgattaaaatt 7831128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 33856372 - 33856314
Alignment:
Q  200 atgtagtaattgataattaaattgtacattaattatcaacaatttgtatgattaaaatt 258  Q
    ||||||||||||| ||| || | ||||||||||||||||||||| ||||||||||||||    
T  33856372 atgtagtaattgaaaataaattggtacattaattatcaacaattagtatgattaaaatt 33856314  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 421
Target Start/End: Complemental strand, 33856271 - 33856187
Alignment:
Q  339 tactcatgatgtacatatctatttaannnnnnnnatttaaatgtgtcaaaaa--ttgtaaatgtgttcaaaaatcaaatgtataa 421  Q
    |||||||||||||||| |||||||||        |||||||||||| |||||  ||||||||||||||||||| |||||||||||    
T  33856271 tactcatgatgtacatttctatttaattttttttatttaaatgtgtaaaaaaaattgtaaatgtgttcaaaaaccaaatgtataa 33856187  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 421
Target Start/End: Complemental strand, 14106505 - 14106421
Alignment:
Q  339 tactcatgatgtacatatctatttaannnnnnnnatttaaatgtgtcaaaaa--ttgtaaatgtgttcaaaaatcaaatgtataa 421  Q
    ||||||| |||||||| |||||||||        |||||||||||| |||||  ||||||||||||||||||| |||||||||||    
T  14106505 tactcataatgtacatttctatttaattttttttatttaaatgtgtaaaaaaaattgtaaatgtgttcaaaaaccaaatgtataa 14106421  T

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Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 91 - 258
Target Start/End: Complemental strand, 2255975 - 2255803
Alignment:
Q  91 aaaattatgagttgtaactaaaa-----atggtgtaaaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaattacgnnnnnnntt 185  Q
    ||||||||||||||||||| |||     ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||| |         ||    
T  2255975 aaaattatgagttgtaactcaaatcaaaatggtgtgaaaagtgtgagcctcaaacacaatatttatagccaacatgtatgaagcaatcaaaaaacttgtt 2255876  T
Q  186 cccttaatttatggatgtagtaattgataattaaattgtacattaattatcaacaatttgtatgattaaaatt 258  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||||| |||| ||||| |||||||||||||    
T  2255875 cccttaatttatggatatagtaattgaaaataaaattgtacattaattttcaaaaatttatatgattaaaatt 2255803  T

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Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 91 - 258
Target Start/End: Complemental strand, 37525456 - 37525284
Alignment:
Q  91 aaaattatgagttgtaactaaaa-----atggtgtaaaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaattacgnnnnnnntt 185  Q
    ||||||||||||||||||| |||     ||||||| ||||||||||||||||||||||||||||||||| || ||||| |||||||| |         ||    
T  37525456 aaaattatgagttgtaactcaaatcaaaatggtgtgaaaagtgtgagcctcaaacacaatatttatagccaatatgtatgaagcaatcaaaaaacttgtt 37525357  T
Q  186 cccttaatttatggatgtagtaattgataattaaattgtacattaattatcaacaatttgtatgattaaaatt 258  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||||| |||| ||||| |||||||||||||    
T  37525356 cccttaatttatggatatagtaattgaaaataaaattgtacattaattttcaaaaatttatatgattaaaatt 37525284  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 31926593 - 31926681
Alignment:
Q  84 tgatatgaaaattatgagttgtaactaaaaatggtgtaaaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaat 172  Q
    |||| ||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||| | || ||||| ||||||||    
T  31926593 tgatgtgaaaattatgagttataactcaaaatgatgtgaaaagtgtgagcctcaaacacaatatttataaccaatatgtatgaagcaat 31926681  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 14289338 - 14289212
Alignment:
Q  105 taactaaaaatggtgtaaaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaattacgnnnnnnnttcccttaatttatggatgta 204  Q
    ||||| ||| |||||| |||| ||||||||||||||| |||||||||||| |||||||| |||| ||| ||        ||||||| |||| || |||||    
T  14289338 taactcaaagtggtgtgaaaactgtgagcctcaaacataatatttatagccaacatgtatgaaggaatcacaataattattcccttgatttgtgtatgta 14289239  T
Q  205 gtaattgataattaaattgtacattaa 231  Q
    |||||| | ||| ||||||||||||||    
T  14289238 gtaattaaaaataaaattgtacattaa 14289212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 31926697 - 31926755
Alignment:
Q  200 atgtagtaattgataattaaattgtacattaattatcaacaatttgtatgattaaaatt 258  Q
    ||||||||||||| ||| || | ||||||||||||||||||||| ||||||||||||||    
T  31926697 atgtagtaattgaaaataaattggtacattaattatcaacaattagtatgattaaaatt 31926755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 421
Target Start/End: Original strand, 31926798 - 31926882
Alignment:
Q  339 tactcatgatgtacatatctatttaannnnnnnnatttaaatgtgtcaaaa--attgtaaatgtgttcaaaaatcaaatgtataa 421  Q
    |||||||||||||||| |||||||||        |||||||||||| ||||  |||||||||||||||||||| |||||||||||    
T  31926798 tactcatgatgtacatttctatttaattttttttatttaaatgtgtaaaaaaaattgtaaatgtgttcaaaaaccaaatgtataa 31926882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 84 - 317
Target Start/End: Original strand, 16046764 - 16047001
Alignment:
Q  84 tgatatgaaaattatgagttgta--actaaaaatggtgtaaaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaattacgnnnnn 181  Q
    |||| ||||||||||||||| ||  ||| |||||| ||| ||||||||||||||||||||||||||||||| | || ||||| |||||||| ||          
T  16046764 tgatgtgaaaattatgagttatataactcaaaatgatgtgaaaagtgtgagcctcaaacacaatatttataaccaatatgtatgaagcaatcac-aaaaa 16046862  T
Q  182 nnttcccttaatttatggatgtagtaattgataattaaattgtacattaattatcaacaatttgtatgattaaaattgaaaagnnnnnnncaa--tactc 279  Q
      |||||||||||| ||||||||||||||||  || || | ||||||||||||||||||||| ||||||||||||||  ||||        ||  |||||    
T  16046863 atttcccttaatttttggatgtagtaattgaagataaattggtacattaattatcaacaattagtatgattaaaattagaaagaaagaaaaaaagtactc 16046962  T
Q  280 atgatattttt-aggggaaacaaatactcatgatgtaca 317  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  16046963 atgatttttttcaggggaaacaaatactcatgatgtaca 16047001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 111 - 258
Target Start/End: Original strand, 28968299 - 28968446
Alignment:
Q  111 aaaatggtgtaaaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaattacgnnnnnnnttcccttaatttatggatgtagtaatt 210  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||| |         |||||||||||||||||| ||||||||    
T  28968299 aaaatggtgtgaaaagtgtgagcctcaaacacaatatttatagccaacatgtatgaagcaatcaaaaaacgtattcccttaatttatggatatagtaatt 28968398  T
Q  211 gataattaaattgtacattaattatcaacaatttgtatgattaaaatt 258  Q
    || ||| |||| ||||||||||| |||| ||||  |||||||||||||    
T  28968399 gaaaataaaatggtacattaattttcaaaaattgatatgattaaaatt 28968446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 421
Target Start/End: Original strand, 16046987 - 16047070
Alignment:
Q  339 tactcatgatgtacatatctatttaannnnnnnnatttaaatgtgtcaaaa-attgtaaatgtgttcaaaaatcaaatgtataa 421  Q
    |||||||||||||||| |||||||||        | |||||||||| |||| |||||||||||||||||||| |||||||||||    
T  16046987 tactcatgatgtacatttctatttaattttttttaattaaatgtgtaaaaaaattgtaaatgtgttcaaaaaccaaatgtataa 16047070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 91 - 258
Target Start/End: Complemental strand, 55372 - 55199
Alignment:
Q  91 aaaattatgagttgtaac-----taaaaatggtgtaaaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaattacgnnnnnnntt 185  Q
    ||||||||||||||||||     | |||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||||| |         ||    
T  55372 aaaattatgagttgtaactcaaatcaaaatggtgtgaaaagtgtgagcctcaaacacaatatttatagccatcatgtatgaagcaatcaaaaaacgtatt 55273  T
Q  186 cccttaatttatggatgta-gtaattgataattaaattgtacattaattatcaacaatttgtatgattaaaatt 258  Q
    |||||||||||||||| || |||||||| ||| |||| ||||||||||| |||| ||||  |||||||||||||    
T  55272 cccttaatttatggatataggtaattgaaaataaaatggtacattaattttcaaaaattgatatgattaaaatt 55199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 93 - 10
Alignment:
Q  89 tgaaaattatgagttgtaactaaaaatggtgtaaaaagtgtgagcctcaaacacaatatttatagcaaacatgtacgaagcaat 172  Q
    ||||| || |||||||||||| |||| | ||| |||| |||| | ||||||||||||||||||||  ||||||||  |||||||    
T  93 tgaaatttgtgagttgtaactcaaaacgttgtgaaaattgtgggtctcaaacacaatatttatagtcaacatgtatcaagcaat 10  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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