View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16281_low_42 (Length: 246)

Name: NF16281_low_42
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16281_low_42
NF16281_low_42
[»] chr6 (3 HSPs)
chr6 (10-228)||(14227902-14228120)
chr6 (87-187)||(8573857-8573958)
chr6 (107-155)||(12771971-12772019)
[»] chr3 (6 HSPs)
chr3 (87-184)||(48936373-48936469)
chr3 (85-155)||(45818704-45818774)
chr3 (87-147)||(38457678-38457738)
chr3 (100-155)||(40416906-40416961)
chr3 (107-188)||(7038569-7038651)
chr3 (85-155)||(32490846-32490916)
[»] chr1 (4 HSPs)
chr1 (87-187)||(26793702-26793803)
chr1 (86-155)||(42472095-42472164)
chr1 (85-155)||(30209689-30209759)
chr1 (85-154)||(12855338-12855407)
[»] chr2 (1 HSPs)
chr2 (85-169)||(24447923-24448007)
[»] chr7 (4 HSPs)
chr7 (87-183)||(39644849-39644946)
chr7 (100-187)||(2334055-2334146)
chr7 (113-188)||(39594606-39594682)
chr7 (85-187)||(41482489-41482592)
[»] chr4 (4 HSPs)
chr4 (85-155)||(34666348-34666418)
chr4 (85-154)||(24155111-24155180)
chr4 (110-188)||(33451291-33451370)
chr4 (87-136)||(42964567-42964616)
[»] chr5 (3 HSPs)
chr5 (88-169)||(16290806-16290887)
chr5 (88-136)||(15416347-15416395)
chr5 (86-155)||(32529478-32529549)
[»] chr8 (2 HSPs)
chr8 (85-184)||(40028765-40028865)
chr8 (105-155)||(38503943-38503993)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 14228120 - 14227902
Alignment:
Q  10 ataatactatatgttgggtattaggcaatgctccaagccgataaaagagagataccacatatcgacttaaaacagccgtttggtgcataggataagaaga 109  Q
    ||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  14228120 ataatactatatgttgggtattaggcaatgctccaagtccataaa-gagagataccacatatcaacttaaaacagtcgtttggtgcataggataagaaga 14228022  T
Q  110 catgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgatagg-aatgataacttaaacctattagcctaatgagtcatctcttt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||    
T  14228021 catgatatgataaaactatcttatcctatttcaatccgttgtttggagtgccgataggaaatgataacttaaacctattacgctaatgagtcatctcttt 14227922  T
Q  209 tataaatctaacattgtact 228  Q
    |||||||| |||||| ||||    
T  14227921 tataaatccaacattatact 14227902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 8573958 - 8573857
Alignment:
Q  87 gtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgataggaa-tgataacttaaaccta 185  Q
    |||| ||||| | |||||||| |||  |||||||||||| ||  |||||| |||||||||   |||||||||  | ||||||| ||||||||||||||||    
T  8573958 gtttcgtgcacatgataagaaaacagaatatgataaaacaattctatcctgtttcaatcctccgtttggagcatcaataggaaatgataacttaaaccta 8573859  T
Q  186 tt 187  Q
    ||    
T  8573858 tt 8573857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 12772019 - 12771971
Alignment:
Q  107 agacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 155  Q
    ||||||||||||||||  |||||||||| ||||| ||||| ||||||||    
T  12772019 agacatgatatgataactctatcttatcgtatttaaatcctttgtttgg 12771971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 48936469 - 48936373
Alignment:
Q  87 gtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgataggaatgataacttaaacct 184  Q
    ||||||||||||||||| ||||||| |||||||||| |||||| |||||| |||||||||||||||||| || || | ||||| ||||| ||||||||    
T  48936469 gtttggtgcataggataggaagacaggatatgataagactatcatatcctgtttcaatccgttgtttggtgcaccaacaggaa-gataatttaaacct 48936373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 45818774 - 45818704
Alignment:
Q  85 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 155  Q
    |||||||||||  |||||||||||||| |||||||||| |||||| ||||||| || ||||||||||||||    
T  45818774 ccgtttggtgcgaaggataagaagacaggatatgataacactatcatatcctacttaaatccgttgtttgg 45818704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 38457678 - 38457738
Alignment:
Q  87 gtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccg 147  Q
    |||||||||||| | |||||||||||||||||||||||||||  |||| ||||||||||||    
T  38457678 gtttggtgcatatgttaagaagacatgatatgataaaactatactatcttatttcaatccg 38457738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 40416906 - 40416961
Alignment:
Q  100 gataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 155  Q
    |||| ||||||| ||||||| ||||||||| ||||||  |||||||||||||||||    
T  40416906 gataggaagacaggatatgaaaaaactatcatatcctgcttcaatccgttgtttgg 40416961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 7038569 - 7038651
Alignment:
Q  107 agacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgatagga-atgataacttaaacctatta 188  Q
    |||| ||||||||||||| ||||||||||||||| ||||| || |||||  | |  |||||| ||||||| ||||||||||||    
T  7038569 agacctgatatgataaaattatcttatcctatttaaatccattatttggtacactaataggatatgataaattaaacctatta 7038651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 32490846 - 32490916
Alignment:
Q  85 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 155  Q
    |||||||||||  |||||||  ||||| |||||||||| |||||| ||| |||||| ||||| ||||||||    
T  32490846 ccgtttggtgcgcaggataaagagacaggatatgataacactatcatattctatttaaatcctttgtttgg 32490916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 26793702 - 26793803
Alignment:
Q  87 gtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgatag-gaatgataacttaaaccta 185  Q
    |||||||||| | |||||||||||||||||||||| ||||||| ||||||  ||||||||||||||||| || || ||||  || |||||||||||| ||    
T  26793702 gtttggtgcacatgataagaagacatgatatgatagaactatcatatcctgattcaatccgttgtttggtgcaccaatagaaaaggataacttaaactta 26793801  T
Q  186 tt 187  Q
    ||    
T  26793802 tt 26793803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 42472164 - 42472095
Alignment:
Q  86 cgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 155  Q
    ||||||||||  ||||||||||||||  ||||||||| ||| || ||||||| || ||||||||||||||    
T  42472164 cgtttggtgcgcaggataagaagacagaatatgataacactgtcatatcctacttaaatccgttgtttgg 42472095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 30209689 - 30209759
Alignment:
Q  85 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 155  Q
    |||||||||||| | ||||||||| || | |||||||||| |||| ||||||| || |||| |||||||||    
T  30209689 ccgtttggtgcacatgataagaagtcagggtatgataaaattatcatatcctacttaaatctgttgtttgg 30209759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 12855407 - 12855338
Alignment:
Q  85 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttg 154  Q
    |||||||||||| | |||||| ||||| |||||||||  | |||| |||||||||| ||||| |||||||    
T  12855407 ccgtttggtgcacatgataaggagacaggatatgatatcattatcatatcctatttaaatccattgtttg 12855338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 24447923 - 24448007
Alignment:
Q  85 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgataggaa 169  Q
    |||||||||||  |||||||| |||||||||||||| ||| ||| ||||||| | |||||||||||||||| | ||| |||||||    
T  24447923 ccgtttggtgcgcaggataaggagacatgatatgattaaaatattttatcctgtctcaatccgttgtttggtgtgcccataggaa 24448007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 39644849 - 39644946
Alignment:
Q  87 gtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgatag-gaatgataacttaaacc 183  Q
    ||||||||||   |||| ||||||| ||||||||||||||||| |||| |||||||||  ||||||||| ||||| ||||  || |||||||||||||    
T  39644849 gtttggtgcacgtgataggaagacaggatatgataaaactatcatatcatatttcaatttgttgtttggtgcgccaatagaaaaggataacttaaacc 39644946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 2334146 - 2334055
Alignment:
Q  100 gataagaagacatgatatgataaaactatcttatcct--at-ttcaatccgttgtttggagcgccgataggaat-gataacttaaacctatt 187  Q
    |||||| |||||||||||||||| |||||| ||||||  || ||||||||| ||||||| || || |||||| | |||||||||||||||||    
T  2334146 gataaggagacatgatatgataacactatcatatcctgaatattcaatccggtgtttggtgcaccaataggattggataacttaaacctatt 2334055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 39594606 - 39594682
Alignment:
Q  113 gatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgatagga-atgataacttaaacctatta 188  Q
    ||||||||||||||||| ||||||| || |||||||||||||| || || ||| || ||| ||| ||||||||||||    
T  39594606 gatatgataaaactatcatatcctacttaaatccgttgtttggtgcaccaataagatatgctaaattaaacctatta 39594682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 41482592 - 41482489
Alignment:
Q  85 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgatagg-aatgataacttaaacc 183  Q
    |||||||||||| | |||| |||||||||||| |||||||||||| | ||||  || ||| || ||||||| || || | ||| || |||||||||||||    
T  41482592 ccgtttggtgcacatgataggaagacatgataggataaaactatcatctcctgatttaatgcgctgtttggtgcaccaacaggaaaggataacttaaacc 41482493  T
Q  184 tatt 187  Q
    ||||    
T  41482492 tatt 41482489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 34666348 - 34666418
Alignment:
Q  85 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 155  Q
    |||||||||||| ||||||||||||||  |||||||| ||||||| |||| |  |||||| ||||||||||    
T  34666348 ccgtttggtgcacaggataagaagacagaatatgatacaactatcatatcttgcttcaatacgttgtttgg 34666418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 24155111 - 24155180
Alignment:
Q  85 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttg 154  Q
    |||||||||||| ||||||||||||||  ||||||||| |||||| | |||| ||||||||  |||||||    
T  24155111 ccgtttggtgcacaggataagaagacagaatatgataatactatcatgtcctgtttcaatcttttgtttg 24155180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 33451291 - 33451370
Alignment:
Q  110 catgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgatagga-atgataacttaaacctatta 188  Q
    |||||||||||||||||||| ||||||| || ||| |||||||||| || || ||| || |||||||  |||||||||||    
T  33451291 catgatatgataaaactatcgtatcctacttaaattcgttgtttggtgcaccaatatgatatgataaaataaacctatta 33451370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 42964616 - 42964567
Alignment:
Q  87 gtttggtgcataggataagaagacatgatatgataaaactatcttatcct 136  Q
    |||||||||  |||||||| ||||| ||||||||||||||||| ||||||    
T  42964616 gtttggtgcgcaggataagcagacaggatatgataaaactatcctatcct 42964567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 169
Target Start/End: Complemental strand, 16290887 - 16290806
Alignment:
Q  88 tttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgataggaa 169  Q
    ||||||||  |||||||  ||||| |||||||||||| ||||||||||| ||| ||||| |||||||| || || |||||||    
T  16290887 tttggtgcgcaggataaagagacaggatatgataaaattatcttatcctgtttaaatcctttgtttggtgctcccataggaa 16290806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 15416395 - 15416347
Alignment:
Q  88 tttggtgcataggataagaagacatgatatgataaaactatcttatcct 136  Q
    ||||||||| | |||| ||||||||||||||||||||||||| ||||||    
T  15416395 tttggtgcacatgataggaagacatgatatgataaaactatcatatcct 15416347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 32529549 - 32529478
Alignment:
Q  86 cgtttggtgcataggataagaagacatgatatgataaaactatc--ttatcctatttcaatccgttgtttgg 155  Q
    |||||| |||| | |||||||||||| |||||||||||||||||   |||| || ||||||||| |||||||    
T  32529549 cgtttgatgcacatgataagaagacaagatatgataaaactatcatatatcttacttcaatccgctgtttgg 32529478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 184
Target Start/End: Original strand, 40028765 - 40028865
Alignment:
Q  85 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgatagg-aatgataacttaaacc 183  Q
    |||||||||||  |||||||| ||||| |||||||| ||| |||| ||||||   |||||| ||||||||| ||||| | ||| ||||||||||| ||||    
T  40028765 ccgtttggtgcgcaggataaggagacaggatatgattaaaatatcatatcctgcctcaatctgttgtttggtgcgccaacaggaaatgataactttaacc 40028864  T
Q  184 t 184  Q
    |    
T  40028865 t 40028865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 38503993 - 38503943
Alignment:
Q  105 gaagacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 155  Q
    |||||||||||| |||||||||||| |||||| |||||||  |||||||||    
T  38503993 gaagacatgataggataaaactatcatatcctgtttcaatttgttgtttgg 38503943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University