View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16281_low_47 (Length: 235)

Name: NF16281_low_47
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16281_low_47
NF16281_low_47
[»] chr8 (23 HSPs)
chr8 (1-235)||(10052159-10052394)
chr8 (9-215)||(13363412-13363619)
chr8 (9-189)||(36756165-36756347)
chr8 (4-189)||(7486178-7486365)
chr8 (14-225)||(39325672-39325885)
chr8 (25-189)||(117149-117313)
chr8 (29-233)||(21670121-21670326)
chr8 (9-189)||(39546511-39546692)
chr8 (69-188)||(37276137-37276257)
chr8 (14-213)||(44103133-44103335)
chr8 (73-215)||(21961898-21962041)
chr8 (24-233)||(13513477-13513687)
chr8 (24-233)||(13603010-13603220)
chr8 (52-190)||(21267232-21267372)
chr8 (123-189)||(36938782-36938848)
chr8 (4-87)||(41522549-41522633)
chr8 (75-189)||(13366951-13367065)
chr8 (74-189)||(2421191-2421308)
chr8 (107-189)||(35944009-35944091)
chr8 (85-175)||(44606254-44606344)
chr8 (167-233)||(13514858-13514924)
chr8 (167-233)||(13604391-13604457)
chr8 (167-213)||(44102026-44102072)
[»] chr4 (18 HSPs)
chr4 (9-235)||(29687812-29688039)
chr4 (4-235)||(39592118-39592350)
chr4 (4-207)||(11094609-11094812)
chr4 (9-189)||(35787897-35788078)
chr4 (44-207)||(44302803-44302967)
chr4 (15-185)||(38418857-38419028)
chr4 (23-189)||(47668452-47668612)
chr4 (14-233)||(2293363-2293584)
chr4 (69-233)||(36604734-36604900)
chr4 (14-198)||(43894197-43894382)
chr4 (44-189)||(6616079-6616226)
chr4 (4-118)||(52980156-52980272)
chr4 (123-189)||(86904-86970)
chr4 (169-215)||(29834427-29834473)
chr4 (103-189)||(50530604-50530690)
chr4 (107-189)||(6140293-6140375)
chr4 (107-189)||(28102177-28102259)
chr4 (167-215)||(2292225-2292273)
[»] chr1 (21 HSPs)
chr1 (89-235)||(44977276-44977422)
chr1 (9-215)||(30551423-30551630)
chr1 (9-212)||(37624404-37624608)
chr1 (1-204)||(50678449-50678653)
chr1 (9-213)||(27689360-27689569)
chr1 (4-187)||(52742804-52742989)
chr1 (14-233)||(51218804-51219025)
chr1 (29-181)||(9633884-9634037)
chr1 (15-185)||(14764334-14764505)
chr1 (14-215)||(23081965-23082167)
chr1 (15-189)||(26055987-26056162)
chr1 (26-215)||(22766670-22766861)
chr1 (1-67)||(44977421-44977487)
chr1 (112-185)||(49141434-49141507)
chr1 (85-176)||(51726754-51726846)
chr1 (169-215)||(48935105-48935151)
chr1 (85-233)||(9415681-9415828)
chr1 (99-190)||(8092698-8092789)
chr1 (111-189)||(14169720-14169798)
chr1 (107-175)||(21277109-21277177)
chr1 (9-115)||(38281007-38281115)
[»] chr3 (19 HSPs)
chr3 (9-189)||(53808419-53808600)
chr3 (14-215)||(39133092-39133294)
chr3 (14-215)||(17349941-17350143)
chr3 (9-213)||(34902828-34903032)
chr3 (14-189)||(47765539-47765716)
chr3 (29-233)||(7483379-7483584)
chr3 (1-189)||(8371321-8371510)
chr3 (15-189)||(11219531-11219706)
chr3 (1-207)||(32979171-32979379)
chr3 (112-189)||(19622106-19622183)
chr3 (74-183)||(49333090-49333198)
chr3 (103-198)||(31638210-31638307)
chr3 (81-189)||(12062291-12062399)
chr3 (101-189)||(35174309-35174397)
chr3 (134-177)||(24753462-24753505)
chr3 (164-215)||(32974213-32974264)
chr3 (167-233)||(27234689-27234755)
chr3 (169-215)||(39287545-39287591)
chr3 (7-67)||(26798736-26798797)
[»] chr7 (15 HSPs)
chr7 (32-181)||(14108928-14109078)
chr7 (32-181)||(14418885-14419035)
chr7 (4-185)||(4167556-4167739)
chr7 (81-215)||(24494958-24495092)
chr7 (26-189)||(38406119-38406282)
chr7 (9-184)||(131832-132009)
chr7 (2-179)||(18801326-18801505)
chr7 (31-179)||(19848690-19848839)
chr7 (85-189)||(25154847-25154951)
chr7 (85-233)||(44113486-44113633)
chr7 (102-181)||(40930527-40930606)
chr7 (15-136)||(35315077-35315199)
chr7 (169-235)||(36673831-36673897)
chr7 (107-189)||(46458646-46458728)
chr7 (144-181)||(4857310-4857347)
[»] chr2 (21 HSPs)
chr2 (1-189)||(21010323-21010513)
chr2 (9-215)||(41296288-41296495)
chr2 (14-213)||(14714569-14714769)
chr2 (25-189)||(29424463-29424627)
chr2 (81-233)||(26205070-26205222)
chr2 (69-189)||(12852987-12853108)
chr2 (26-233)||(4512163-4512371)
chr2 (44-171)||(7983564-7983692)
chr2 (1-187)||(3528089-3528278)
chr2 (13-189)||(23177775-23177952)
chr2 (13-189)||(23589032-23589209)
chr2 (44-185)||(45047447-45047588)
chr2 (15-163)||(6708819-6708968)
chr2 (44-185)||(3532299-3532441)
chr2 (150-233)||(8537069-8537152)
chr2 (1-61)||(45047624-45047684)
chr2 (169-215)||(2305615-2305661)
chr2 (72-189)||(7037067-7037185)
chr2 (108-189)||(14509310-14509391)
chr2 (107-176)||(25570803-25570872)
chr2 (164-212)||(2306651-2306699)
[»] chr5 (10 HSPs)
chr5 (69-235)||(18693753-18693919)
chr5 (4-171)||(7426760-7426929)
chr5 (4-205)||(21387722-21387924)
chr5 (81-181)||(2167422-2167522)
chr5 (134-199)||(7345350-7345415)
chr5 (167-235)||(41905230-41905298)
chr5 (169-215)||(4567026-4567072)
chr5 (169-215)||(15510258-15510304)
chr5 (107-181)||(5383051-5383125)
chr5 (107-189)||(40058119-40058201)
[»] chr6 (9 HSPs)
chr6 (9-235)||(18139320-18139548)
chr6 (25-188)||(33801867-33802031)
chr6 (128-212)||(13507125-13507209)
chr6 (107-189)||(14328707-14328789)
chr6 (107-189)||(14421717-14421799)
chr6 (107-189)||(293573-293655)
chr6 (169-215)||(2138632-2138678)
chr6 (51-99)||(13507048-13507097)
chr6 (73-189)||(27440074-27440190)
[»] scaffold0098 (1 HSPs)
scaffold0098 (15-181)||(41017-41184)
[»] scaffold0051 (1 HSPs)
scaffold0051 (5-197)||(39730-39924)
[»] scaffold0015 (1 HSPs)
scaffold0015 (73-215)||(207696-207839)
[»] scaffold0025 (1 HSPs)
scaffold0025 (4-181)||(56526-56707)
[»] scaffold1974 (1 HSPs)
scaffold1974 (81-189)||(535-643)
[»] scaffold1878 (1 HSPs)
scaffold1878 (81-189)||(631-739)
[»] scaffold0290 (1 HSPs)
scaffold0290 (81-189)||(9385-9493)
[»] scaffold0084 (1 HSPs)
scaffold0084 (14-205)||(13043-13235)
[»] scaffold0045 (1 HSPs)
scaffold0045 (123-156)||(77128-77161)
[»] scaffold0122 (1 HSPs)
scaffold0122 (74-181)||(16054-16161)
[»] scaffold0003 (1 HSPs)
scaffold0003 (73-189)||(47171-47287)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 10052394 - 10052159
Alignment:
Q  1 aaagtgagaaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaa 99  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| ||||| | ||||||||||||||| ||||||||||||||    
T  10052394 aaagtgagaaaaaattaggtggtagtggttcacagtaaaatacaatagaccctacatgatccaacaatcatcttttaaagaaaaaatcaaagggttaaaa 10052295  T
Q  100 cataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacg 199  Q
    | |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||  |||||||||||| |||||||||    
T  10052294 cttaaaaatttaataaggtttatggtggaccacctttaaatatggttcatcttagacatttaatgttaaaaactaaaggagatgaccaaaagaggtaacg 10052195  T
Q  200 gcagaaaacataaggggccagtttaagacattttat 235  Q
    |||||  ||||||||| ||| ||| ||||| |||||    
T  10052194 gcagatgacataagggaccaatttgagacactttat 10052159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 13363412 - 13363619
Alignment:
Q  9 aaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaa 107  Q
    |||| |||||||| ||||||||||||  |||||| |||||| ||||||||||| ||||| ||||||||||||||||| | ||| ||||||||   |||||    
T  13363412 aaaatattaggtgttagtggttcacacaaaaatacaatagaccctacatgatccaacaatcctcttttaaagaaaaaattaaaaggttaaaattaaaaaa 13363511  T
Q  108 tttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaa 207  Q
    |||| ||||||  | |||| |||||||||||||||||||||| |||||| |||| |||||||||||||| |||| ||||||| ||||||||  |||||||    
T  13363512 tttactaaggtccatggtgcaccacctttaaatatggttcactttagacatttggtgttaaaaactaacggagaggaccaaaagaggtaaccacagaaaa 13363611  T
Q  208 cataaggg 215  Q
    ||||||||    
T  13363612 cataaggg 13363619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 36756347 - 36756165
Alignment:
Q  9 aaaaaattaggtggtagtggttcacaataaaatataat-agatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaa 106  Q
    |||| |||||||| |||||||||||| ||||||| ||| ||| ||||||||||| ||| |  |||||||||||||||| | ||||||||||||  |||||    
T  36756347 aaaatattaggtgttagtggttcacagtaaaatacaattagaccctacatgatccaacgattctcttttaaagaaaaaattaaagggttaaaatttaaaa 36756248  T
Q  107 atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    ||||||||||| ||| |||| |||||||||||||||| |||||||||||  ||||||||||||||||||| ||||||||||||    
T  36756247 atttaataaggcttatggtgaaccacctttaaatatgattcaccttagaaatttgatgttaaaaactaacggagatgaccaaa 36756165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 7486365 - 7486178
Alignment:
Q  4 gtgagaaaaa-attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaaca 101  Q
    |||||||||| |||||||| | |||||| ||||||||||| |||||||| || |||||| ||||| ||||||||||||||||| ||||| || |||||      
T  7486365 gtgagaaaaatattaggtgttggtggtttacaataaaatacaatagatcttatatgatctaacaatcctcttttaaagaaaaaatcaaaaggctaaaatt 7486266  T
Q  102 taaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    ||||||||||||||||| || |||| || || |||||| ||||||||| |||||| ||||||||||||||||||| |||| |||||||    
T  7486265 taaaaatttaataaggtctatggtggacaacatttaaacatggttcactttagacatttgatgttaaaaactaacggagaggaccaaa 7486178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 39325672 - 39325885
Alignment:
Q  14 attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa--tcaaagggttaaaacataaaaattta 111  Q
    |||||||| || ||||||||| |||| || ||||| || ||||||||| |||  |  |||||||||||||||  ||||| ||||||||   |||||||||    
T  39325672 attaggtgttaatggttcacagtaaagtacaataggtcgtacatgatccaactgcattcttttaaagaaaaaaatcaaatggttaaaattaaaaaattta 39325771  T
Q  112 ataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacata 211  Q
     |||||  || | |  |||||||||||| || ||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||| ||||||||||    
T  39325772 gtaaggcatatgatagaccacctttaaacatagttcaccttagacatttgatgttaaaaactagcagagatgactaaaagaggtaacggaagaaaacata 39325871  T
Q  212 aggggccagtttaa 225  Q
    |||| ||| |||||    
T  39325872 agggaccaatttaa 39325885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 117313 - 117149
Alignment:
Q  25 gtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaataaggtttacg 123  Q
    |||||| ||||||||||| ||||||||||| |||||| ||||| ||||||| ||||||||| ||||| || |||||  ||||| |||| |||||| || |    
T  117313 gtggtttacaataaaatacaatagatcctatatgatccaacaatcctctttcaaagaaaaaatcaaaaggctaaaatttaaaa-tttagtaaggtctatg 117215  T
Q  124 gtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    ||| |||||||||||| |||  ||||||||||| ||||||||||||||||||| |||| |||||||    
T  117214 gtggaccacctttaaacatgactcaccttagacatttgatgttaaaaactaacggagaggaccaaa 117149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 233
Target Start/End: Complemental strand, 21670326 - 21670121
Alignment:
Q  29 ttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaatc-aaagggttaaaacataaaaatttaataaggtttacggtgt 127  Q
    |||||| |||| ||||||||| || |||||||  |||   ||||||||||||||||| | ||| ||||||||   ||||| |||||||||  || ||||     
T  21670326 ttcacactaaagtataatagaccccacatgattcaacggtcctcttttaaagaaaaaaccaaatggttaaaattaaaaaaattaataaggcatatggtgg 21670227  T
Q  128 accacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacataaggggccagtttaaga 227  Q
    ||||| ||| ||||||||||||||||||  ||||||||||||||||||| |||| ||||||| |||||||||| |||| ||||||||| ||| ||| |||    
T  21670226 accactttttaatatggttcaccttagatatttgatgttaaaaactaacggagaagaccaaaagaggtaacggaagaagacataagggaccaatttgaga 21670127  T
Q  228 catttt 233  Q
    | ||||    
T  21670126 cgtttt 21670121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 39546511 - 39546692
Alignment:
Q  9 aaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctctttt-aaagaaaaatcaaagggttaaaacataaaaa 107  Q
    ||||||||||||| | |||||||||  ||||||| ||||||||| |||||||| ||||| |||||||| ||| |||||||||||||||||||   |        
T  39546511 aaaaaattaggtgtttgtggttcacggtaaaatacaatagatcccacatgatccaacaatcctcttttaaaaaaaaaatcaaagggttaaaattaatttt 39546610  T
Q  108 tttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||| ||||||  | |||| |||||||||||| |||||||| |||| || ||||||||||||||||||| ||||||||||||    
T  39546611 tttactaaggtccatggtggaccacctttaaacatggttcatcttaaacatttgatgttaaaaactaacggagatgaccaaa 39546692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 69 - 188
Target Start/End: Original strand, 37276137 - 37276257
Alignment:
Q  69 cctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgtta 167  Q
    ||||||||||||||||| ||||| ||||||||   |||||||||||| ||| ||  ||| ||||||||||||||||||||||||||||| ||||||||||    
T  37276137 cctcttttaaagaaaaaatcaaatggttaaaattaaaaaatttaatatggtctatagtgaaccacctttaaatatggttcaccttagacttttgatgtta 37276236  T
Q  168 aaaactaacagagatgaccaa 188  Q
    |||||||||||||| ||||||    
T  37276237 aaaactaacagagaggaccaa 37276257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 44103133 - 44103335
Alignment:
Q  14 attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaa--agaaaaatcaaagggttaaaa-cataaaaattt 110  Q
    ||||||||  |||||||||||||||| || |||||| || |||||||  |||   | ||||||||  | |||||||||| ||||||||  | ||||| ||    
T  44103133 attaggtgtgagtggttcacaataaagtacaatagaccccacatgattcaacggtcttcttttaatgaaaaaaatcaaatggttaaaattaaaaaaaatt 44103232  T
Q  111 aataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacat 210  Q
    |||||||  || |||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |||| ||||||| |||| ||||| |||| ||||    
T  44103233 aataaggcatatggtggaccacctttaaacatggttcaccttagacatttgatgttaaaaactaacggagaggaccaaaagaggaaacggaagaagacat 44103332  T
Q  211 aag 213  Q
    |||    
T  44103333 aag 44103335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 21962041 - 21961898
Alignment:
Q  73 ttttaaagaaaaa-tcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaa 171  Q
    ||||||||||||| ||||| ||||||||   ||||||||| |||||  || |||| |||||||||||| ||||||||||| |||| ||||||||||||||    
T  21962041 ttttaaagaaaaaatcaaatggttaaaattaaaaaatttagtaaggcatatggtggaccacctttaaacatggttcacctaagacatttgatgttaaaaa 21961942  T
Q  172 ctaacagagatgaccaaatgaggtaacggcagaaaacataaggg 215  Q
    ||||| |||| ||||||| ||| |||||| |||| |||||||||    
T  21961941 ctaacggagaggaccaaaagagataacggaagaagacataaggg 21961898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 233
Target Start/End: Complemental strand, 13513687 - 13513477
Alignment:
Q  24 agtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaataaggtttac 122  Q
    ||||||||||| |||| || |||||| |  |||||||  |||   ||| ||||||||||||| ||||| ||||||||   ||||| |||||||||| ||     
T  13513687 agtggttcacagtaaagtacaatagacctcacatgattcaacggtcctattttaaagaaaaaatcaaatggttaaaattaaaaaaattaataaggtatat 13513588  T
Q  123 ggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacataaggggccagtt 222  Q
    |||| ||||| ||||||||||||||| |||| || ||||||||||||| ||||| |||| ||||||| |||||||| | |||| ||||||||| ||| ||    
T  13513587 ggtggaccacttttaaatatggttcatcttatacatttgatgttaaaagctaacggagaggaccaaaagaggtaacagaagaagacataagggaccaatt 13513488  T
Q  223 taagacatttt 233  Q
    | |||| ||||    
T  13513487 tgagacgtttt 13513477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 233
Target Start/End: Complemental strand, 13603220 - 13603010
Alignment:
Q  24 agtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaataaggtttac 122  Q
    ||||||||||| |||| || |||||| |  |||||||  |||   ||| ||||||||||||| ||||| ||||||||   ||||| |||||||||| ||     
T  13603220 agtggttcacagtaaagtacaatagacctcacatgattcaacggtcctattttaaagaaaaaatcaaatggttaaaattaaaaaaattaataaggtatat 13603121  T
Q  123 ggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacataaggggccagtt 222  Q
    |||| ||||| ||||||||||||||| |||| || ||||||||||||| ||||| |||| ||||||| |||||||| | |||| ||||||||| ||| ||    
T  13603120 ggtggaccacttttaaatatggttcatcttatacatttgatgttaaaagctaacggagaggaccaaaagaggtaacagaagaagacataagggaccaatt 13603021  T
Q  223 taagacatttt 233  Q
    | |||| ||||    
T  13603020 tgagacgtttt 13603010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 190
Target Start/End: Complemental strand, 21267372 - 21267232
Alignment:
Q  52 ctacatgatcaaacaaccctcttttaaagaaaaa--tcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcac 149  Q
    |||||||||| ||||| ||| |||||||||||||  ||||| ||||||||  |||||||||||| |||| || |||| |||||||| ||  ||||| |||    
T  21267372 ctacatgatccaacaatcctattttaaagaaaaaaatcaaaaggttaaaatttaaaaatttaattaggtatatggtggaccaccttgaatcatggtccac 21267273  T
Q  150 cttagacgtttgatgttaaaaactaacagagatgaccaaat 190  Q
    ||||||  ||||||||||||||||||| |||| ||||||||    
T  21267272 cttagatatttgatgttaaaaactaacggagaggaccaaat 21267232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 36938848 - 36938782
Alignment:
Q  123 ggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||| |||||||||||||||||||||| |||||  |||||||||||||| ||||||||| |||||||    
T  36938848 ggtgaaccacctttaaatatggttcactttagatatttgatgttaaaaattaacagagaagaccaaa 36938782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 41522549 - 41522633
Alignment:
Q  4 gtgagaaaaa-attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaatc 87  Q
    |||||||||| |||||||| | |||||| ||||||||||| |||||| ||||||| ||| |||||  ||||||||||||||||||    
T  41522549 gtgagaaaaatattaggtgttggtggtttacaataaaatacaatagaccctacatcatccaacaaatctcttttaaagaaaaatc 41522633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 13366951 - 13367065
Alignment:
Q  75 ttaaagaaaaatcaaagggttaaaacataaaaa-tttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaact 173  Q
    ||||| ||| |||||| |||||||| ||||||  ||||||||||| || |||| ||||||| ||||  ||||||||||||||| ||| | ||||||||||    
T  13366951 ttaaaaaaatatcaaacggttaaaa-ataaaaggtttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaact 13367049  T
Q  174 aacagagatgaccaaa 189  Q
    ||| |||| |||||||    
T  13367050 aacggagaggaccaaa 13367065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 189
Target Start/End: Original strand, 2421191 - 2421308
Alignment:
Q  74 tttaaagaaaaa--tcaaagggttaaaacataaaa-atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaa 170  Q
    ||||||||||||  ||||| |||||||| |||||| |||||||||||| || | || |||| || ||||  ||||||||||||||| ||| | |||||||    
T  2421191 tttaaagaaaaagatcaaacggttaaaa-ataaaagatttaataaggtctatgatggaccatctataaagttggttcaccttagacatttaaggttaaaa 2421289  T
Q  171 actaacagagatgaccaaa 189  Q
    ||||||| ||| |||||||    
T  2421290 actaacaaagaggaccaaa 2421308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 35944091 - 35944009
Alignment:
Q  107 atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||||||||| | || |||| | ||||| ||||  ||||||||||||||| ||| | ||||||||||||| ||||||||||||    
T  35944091 atttaataagatctatggtggatcacctataaagttggttcaccttagacatttaaagttaaaaactaacggagatgaccaaa 35944009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 44606344 - 44606254
Alignment:
Q  85 atcaaagggttaaaacataaaa-atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaa 175  Q
    |||||| |||||||| |||||| |||||| ||||| || |||| ||||||| ||||  ||||||||||||||| ||| | ||||||||||||    
T  44606344 atcaaacggttaaaa-ataaaagatttaacaaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaactaa 44606254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 13514858 - 13514924
Alignment:
Q  167 aaaaactaacagagatgaccaaatgaggtaacggcagaaaacataaggggccagtttaagacatttt 233  Q
    |||||||||| |||||||||||| |||||||| | |||| ||||||||| ||| ||| |||| ||||    
T  13514858 aaaaactaacggagatgaccaaaagaggtaacagaagaagacataagggaccaatttgagacgtttt 13514924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 13604391 - 13604457
Alignment:
Q  167 aaaaactaacagagatgaccaaatgaggtaacggcagaaaacataaggggccagtttaagacatttt 233  Q
    |||||||||| |||||||||||| |||||||| | |||| ||||||||| ||| ||| |||| ||||    
T  13604391 aaaaactaacggagatgaccaaaagaggtaacagaagaagacataagggaccaatttgagacgtttt 13604457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 44102072 - 44102026
Alignment:
Q  167 aaaaactaacagagatgaccaaatgaggtaacggcagaaaacataag 213  Q
    ||||||||||||||| ||||||| |||||||||| |||| |||||||    
T  44102072 aaaaactaacagagaggaccaaaagaggtaacggaagaagacataag 44102026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 29687812 - 29688039
Alignment:
Q  9 aaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaa 107  Q
    |||||||||||||||||||||||||||||||||| |||||| | ||||||||| |||||  |||||||||||||||| ||||| ||||||||| ||||||    
T  29687812 aaaaaattaggtggtagtggttcacaataaaatacaatagaccttacatgatccaacaattctcttttaaagaaaaaatcaaatggttaaaacttaaaaa 29687911  T
Q  108 tttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaa 207  Q
    ||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||  |||||||||||| ||||||||| || || |    
T  29687912 tttaataaggtttacggtggaccacctttaaatatggttcgccgtagacatttgatgttaaaaactaaaggagatgaccaaaagaggtaacgacaaaaga 29688011  T
Q  208 cataaggggccagtttaagacattttat 235  Q
    ||||||||   ||||||||||| |||||    
T  29688012 cataagggatgagtttaagacactttat 29688039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 235
Target Start/End: Original strand, 39592118 - 39592350
Alignment:
Q  4 gtgagaaaaa-attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaaca 101  Q
    |||||||||| |||||||| | |||||| |||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||| ||||| ||||||||      
T  39592118 gtgagaaaaatattaggtgttggtggtttacaataaaatataataga-cctacatgatccaacaatcctcttttatagaaaaaatcaaaaggttaaaatt 39592216  T
Q  102 taaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggc 201  Q
    ||||||||||||||||| || | || |||||||||||| |||| ||||||||||| |||||||||||||| |||| ||||  ||||||  ||  |||| |    
T  39592217 taaaaatttaataaggtatatgatggaccacctttaaacatggctcaccttagacatttgatgttaaaaattaacggagagaaccaaaacagtaaacgac 39592316  T
Q  202 agaaaacataaggggccagtttaagacattttat 235  Q
    |||| |||||| || ||| ||| ||||| |||||    
T  39592317 agaagacataatggaccaatttgagacactttat 39592350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 11094812 - 11094609
Alignment:
Q  4 gtgagaaaaa-attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaaga-aaaatcaaagggttaaaaca 101  Q
    |||||||||| |||||||| | |||||| ||||||||||| |||||| | ||||||||| ||||| ||||||||||||| ||||||| | |||||| |      
T  11094812 gtgagaaaaatattaggtgttggtggtttacaataaaatacaatagaccttacatgatccaacaatcctcttttaaagaaaaaatcacaaggttaatatt 11094713  T
Q  102 taaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggc 201  Q
    ||||||||||||||||| || |||| ||||| |||||| |||||  ||||||||| |||||||||||||||||||  ||| |||||||  ||  ||||||    
T  11094712 taaaaatttaataaggtctatggtgaaccacatttaaacatggt--accttagacatttgatgttaaaaactaacgaagaggaccaaaacagtaaacggc 11094615  T
Q  202 agaaaa 207  Q
    ||||||    
T  11094614 agaaaa 11094609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 35788078 - 35787897
Alignment:
Q  9 aaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaatc-aaagggttaaaacataaaaa 107  Q
    |||| |||||||| | ||| || ||||||||||  |||||| ||| ||||||| ||||| | |||||||| |||||||  ||| ||||||||  ||||||    
T  35788078 aaaatattaggtgttggtgatttacaataaaatgcaatagaccctgcatgatccaacaatcatcttttaatgaaaaatttaaaaggttaaaatttaaaaa 35787979  T
Q  108 tttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||||||| || || |||| |||||||||||| ||| || ||||||||| ||||||||||||||||||| |||| |||||||    
T  35787978 tttaataaagtctatggtggaccacctttaaacatgatttaccttagacatttgatgttaaaaactaacggagaggaccaaa 35787897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 207
Target Start/End: Complemental strand, 44302967 - 44302803
Alignment:
Q  44 aatagatcctacatgatcaaacaaccctcttttaaagaaa-aatcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatat 142  Q
    |||| ||||||||| ||  ||||| | ||||||||||||  ||||||| ||||||||   |||||||||||| ||| || |||| |||||||||||||||    
T  44302967 aatatatcctacataattcaacaatcatcttttaaagaatcaatcaaatggttaaaattaaaaaatttaatacggtctatggtgaaccacctttaaatat 44302868  T
Q  143 ggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaa 207  Q
     ||||||||||| | ||| ||||||||||||||| |||| ||||||| ||||||| |||||||||    
T  44302867 agttcaccttagtcttttaatgttaaaaactaacggagaggaccaaaagaggtaatggcagaaaa 44302803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 38418857 - 38419028
Alignment:
Q  15 ttaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaat 113  Q
    ||||||| |||||||||| | |||| || |||||| ||||||||||  |||| |  | ||||||||||||| ||||| |||||||| | ||||||||| |    
T  38418857 ttaggtgttagtggttcatagtaaagtacaatagaccctacatgatttaacagctattttttaaagaaaaaatcaaatggttaaaataaaaaaatttagt 38418956  T
Q  114 aaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgac 185  Q
    ||||  || |||| ||||||| ||||||||||||| |||| |||||| ||||||||||||||| ||||||||    
T  38418957 aaggcatatggtggaccacctataaatatggttcatcttaaacgtttaatgttaaaaactaacggagatgac 38419028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 47668452 - 47668612
Alignment:
Q  23 tagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaag--aaaaatcaaagggttaaaacataaaaatttaataaggttt 120  Q
    |||||||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||||  |||||||||| ||||        ||||||||| ||||| |    
T  47668452 tagtggttcacactaaaatacaatagaccctacatgatcgaacaatcctcttttaaagaaaaaaatcaaaaggtt--------aaaatttaaaaaggtct 47668543  T
Q  121 acggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    | |||| |||| ||||||  |||||| ||||||||  |||||||||||||||||||||||| |||||||    
T  47668544 atggtggaccatctttaaccatggtttaccttagatatttgatgttaaaaactaacagagaggaccaaa 47668612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 2293363 - 2293584
Alignment:
Q  14 attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaa--aatcaaagggttaaaacataaaaattta 111  Q
    ||||||||  ||||||||||| |||| || |||||| || |||||||  |||   |||||||||| ||||  ||||||| ||||||||   |||||||||    
T  2293363 attaggtgtgagtggttcacagtaaagtacaatagaccccacatgattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaaattta 2293462  T
Q  112 ataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacata 211  Q
    ||||||  || |||| |||| ||||||||||| ||||| | |||| |||||| |||||||||||| |||| ||||||  ||| | |||| |||| |||||    
T  2293463 ataaggcatatggtggaccatctttaaatatgattcacttcagacatttgattttaaaaactaacggagaggaccaatagagattacggaagaagacata 2293562  T
Q  212 aggggccagtttaagacatttt 233  Q
    |||| ||| |||||||| ||||    
T  2293563 agggaccaatttaagacgtttt 2293584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 36604734 - 36604900
Alignment:
Q  69 cctcttttaaagaaaaa-tcaaagggttaaaac-ataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgtt 166  Q
    ||||||||||||||||| ||||| ||||||||  | ||||| |||||||||  || ||||  |||| ||| ||||||||||| ||||||  |||||| ||    
T  36604734 cctcttttaaagaaaaaatcaaatggttaaaattaaaaaaaattaataaggcatatggtgggccactttttaatatggttcatcttagatatttgatatt 36604833  T
Q  167 aaaaactaacagagatgaccaaatgaggtaacggcagaaaacataaggggccagtttaagacatttt 233  Q
    |||||||||| |||| ||||||| |||||||||| |||| ||||||||| ||| |||||||| ||||    
T  36604834 aaaaactaacggagaggaccaaaagaggtaacggaagaagacataagggaccaatttaagacgtttt 36604900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 43894382 - 43894197
Alignment:
Q  14 attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaa 112  Q
    ||||| || |||||||| ||| |||| || |||||| ||||||  ||  |||| |||||||||||||||||| ||||| |||||| |   ||||||||||    
T  43894382 attagatgttagtggttgacactaaagtacaatagaccctacaaaattcaacagccctcttttaaagaaaaaatcaaatggttaagattaaaaaatttaa 43894283  T
Q  113 taaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaac 198  Q
    || ||  ||  ||| |||| ||||||||||||||||||| |||| ||||||||||||||| ||| || ||||||||| ||||||||    
T  43894282 tagggcatattgtggaccatctttaaatatggttcacctcagacatttgatgttaaaaaccaacggatatgaccaaaagaggtaac 43894197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 6616079 - 6616226
Alignment:
Q  44 aatagatcctacatgatcaaacaaccctcttttaaagaaa--aatcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaata 141  Q
    |||||| ||| ||||||| ||||| |||||||||||||||  ||||||| ||||||||  ||||||||||||||||| ||  ||| || | ||||||  |    
T  6616079 aatagaccctgcatgatcgaacaatcctcttttaaagaaataaatcaaaaggttaaaatttaaaaatttaataaggtctatagtggactatctttaatca 6616178  T
Q  142 tggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    | ||||||||| ||| ||||||||||||||||||  |||| |||||||    
T  6616179 ttgttcacctttgacatttgatgttaaaaactaaaggagaggaccaaa 6616226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 52980272 - 52980156
Alignment:
Q  4 gtgagaaaaa-attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaaga-aaaatcaaagggttaaaaca 101  Q
    |||||||||| |||||||| | |||||| ||||||||||| ||||||  |||||| ||| ||||| ||||||||||||| ||||| ||| ||||||||      
T  52980272 gtgagaaaaatattaggtgttggtggtttacaataaaatacaatagactctacataatccaacaatcctcttttaaagaaaaaattaaaaggttaaaatt 52980173  T
Q  102 taaaaatttaataaggt 118  Q
    |||||||||||||||||    
T  52980172 taaaaatttaataaggt 52980156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 86970 - 86904
Alignment:
Q  123 ggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  86970 ggtggaccacctttaaacatggttcaccttagacatttgatgttaaaaactaacggagaagaccaaa 86904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 29834427 - 29834473
Alignment:
Q  169 aaactaacagagatgaccaaatgaggtaacggcagaaaacataaggg 215  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||    
T  29834427 aaactaacagagatgaccaaaagaggtaacggcagaagacataaggg 29834473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 50530690 - 50530604
Alignment:
Q  103 aaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||||||||||||||| || |||| || |||| ||||  ||||||||||||||| ||| | |||||||| ||||||| |||||||||    
T  50530690 aaaaatttaataaggtctatggtggactacctataaagttggttcaccttagacttttaaggttaaaaattaacagaaatgaccaaa 50530604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 6140293 - 6140375
Alignment:
Q  107 atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||||||||||| || |||| || |||| ||||  ||||||||||||||  ||| | ||||||||||||| || |||||||||    
T  6140293 atttaataaggtctatggtggactacctataaagttggttcaccttagatatttaaggttaaaaactaacggaaatgaccaaa 6140375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 28102259 - 28102177
Alignment:
Q  107 atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||||||||||||||||||| | ||||| ||||  || |||||||||||| ||| | ||||||||  ||| || |||||||||    
T  28102259 atttaataaggtttacggtggatcacctataaagttgattcaccttagacatttaaggttaaaaataaacggaaatgaccaaa 28102177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 2292273 - 2292225
Alignment:
Q  167 aaaaactaacagagatgaccaaatgaggtaacggcagaaaacataaggg 215  Q
    ||||||||||||||| ||||||  |||||||||| |||| |||||||||    
T  2292273 aaaaactaacagagaggaccaagagaggtaacggaagaagacataaggg 2292225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 44977422 - 44977276
Alignment:
Q  89 aagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaa 188  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44977422 aagggttaaaacataaaaatttaataaggtttacggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacagagatgaccaa 44977323  T
Q  189 atgaggtaacggcagaaaacataaggggccagtttaagacattttat 235  Q
    ||||||||||||||||| ||||||||| ||||||||||||| |||||    
T  44977322 atgaggtaacggcagaagacataagggaccagtttaagacactttat 44977276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 30551423 - 30551630
Alignment:
Q  9 aaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaa 107  Q
    |||| |||||||| |||||||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||||||||   |||||    
T  30551423 aaaatattaggtgttagtggttcacactaaaatacaatagaccctacatgatccaacaatcctcttttaaagaaaaaatcaaaaggttaaaattaaaaaa 30551522  T
Q  108 tttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaa 207  Q
    |||| ||||||  | |||| ||||||||| |||||||||||| |||||| ||||||| ||||||||||| |||||||||||| |||||||||  ||||||    
T  30551523 tttactaaggtccatggtgcaccaccttttaatatggttcactttagacatttgatgctaaaaactaacggagatgaccaaaagaggtaacgatagaaaa 30551622  T
Q  208 cataaggg 215  Q
    ||||||||    
T  30551623 cataaggg 30551630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 37624404 - 37624608
Alignment:
Q  9 aaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaa 107  Q
    |||| |||||||| |||||||||||| ||||||| |||||| ||||||||||  ||||| ||||||||||||||||| ||||| ||||||||   |||||    
T  37624404 aaaatattaggtgttagtggttcacactaaaatacaatagaccctacatgattcaacaatcctcttttaaagaaaaaatcaaaaggttaaaattaaaaaa 37624503  T
Q  108 tttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaa 207  Q
    |||| ||||||  | |||| || |||||| |||||||||||| |||||| ||||||||||||||||||| |||| ||||||| || |||||| |||||||    
T  37624504 tttactaaggtccatggtgcacaaccttttaatatggttcactttagacatttgatgttaaaaactaacggagaggaccaaaagatgtaacgacagaaaa 37624603  T
Q  208 cataa 212  Q
    |||||    
T  37624604 cataa 37624608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 50678653 - 50678449
Alignment:
Q  1 aaagtgagaaaaa-attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaa 98  Q
    ||||||| ||||| |||||||| |||| ||||||| |||| || |||||| ||||  | ||  ||||  ||||||||||||||||| ||||| |||||||    
T  50678653 aaagtgaaaaaaatattaggtgttagtcgttcacagtaaagtacaatagaccctatgtaattcaacagtcctcttttaaagaaaaaatcaaatggttaaa 50678554  T
Q  99 acataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaac 198  Q
    |  ||||||||||||| ||| || |||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||| ||||||||    
T  50678553 at-taaaaatttaatacggtctatggtgaaccacctttaaatatggttcaccttagagttttgatgttaaaaactaacagagaggaccaaaagaggtaac 50678455  T
Q  199 ggcaga 204  Q
    ||||||    
T  50678454 ggcaga 50678449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 27689569 - 27689360
Alignment:
Q  9 aaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaac----ata 103  Q
    |||| |||||||| |||||||||||| ||||||| |||||| ||||||||||| |||||   ||||||||||||||| ||||| ||||||||     | |    
T  27689569 aaaatattaggtgttagtggttcacactaaaatacaatagaccctacatgatccaacaattatcttttaaagaaaaaatcaaaaggttaaaattaaaaaa 27689470  T
Q  104 aaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcag 203  Q
    |||| ||||||||||  | | || |||||||||||||||||||||| |||||| |||| |||||||||||||| |||| ||||||| ||||||||| |||    
T  27689469 aaaaattaataaggtccatgatggaccacctttaaatatggttcactttagacatttggtgttaaaaactaacggagaggaccaaaagaggtaacgacag 27689370  T
Q  204 aaaacataag 213  Q
    ||||||||||    
T  27689369 aaaacataag 27689360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 187
Target Start/End: Original strand, 52742804 - 52742989
Alignment:
Q  4 gtgagaaaaa-attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaaca 101  Q
    |||||||||| ||||||||  ||||||| ||| ||||||| ||||||||||   ||||| |||||  |||||||||||||||| ||||| ||||||||      
T  52742804 gtgagaaaaatattaggtgtcagtggtttacagtaaaatacaatagatcctttgtgatccaacaattctcttttaaagaaaaaatcaaaaggttaaaatt 52742903  T
Q  102 taaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgacca 187  Q
    ||||||| |||| |||| || ||||||||||||||||| ||||||||||||| || ||||||||||||||||||| |||| |||||    
T  52742904 taaaaatgtaattaggtctatggtgtaccacctttaaacatggttcaccttaaacatttgatgttaaaaactaacggagaggacca 52742989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 51218804 - 51219025
Alignment:
Q  14 attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaa--aatcaaagggttaaaacataaaaattta 111  Q
    ||||||||  |||||||||||  ||| || |||||| || |||||||  ||||  |||||||||| ||||  ||||||| | ||||||   |||||||||    
T  51218804 attaggtgtgagtggttcacaggaaagtacaatagaccccacatgattcaacagtcctcttttaatgaaataaatcaaatgattaaaattaaaaaattta 51218903  T
Q  112 ataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacata 211  Q
    ||||||  || |||| |||| ||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||| |||| |||||| |||| |||||    
T  51218904 ataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaggaccaattgagttaacggaagaagacata 51219003  T
Q  212 aggggccagtttaagacatttt 233  Q
    |||| ||| ||| |||| ||||    
T  51219004 agggaccaatttgagacgtttt 51219025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 9634037 - 9633884
Alignment:
Q  29 ttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaataaggtttacggtgt 127  Q
    |||||| ||||||| || ||| ||||||| ||| ||| | | |||| |||||||||| ||||||||| ||||  ||||||||||||||||| || ||||     
T  9634037 ttcacactaaaatacaaaagaccctacataatccaactatcttcttctaaagaaaaaatcaaagggtcaaaatttaaaaatttaataaggtctatggtgg 9633938  T
Q  128 accacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagaga 181  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  9633937 accacctttaaacatggttcaccttagacatttgatgttaaaaactaacggaga 9633884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 14764505 - 14764334
Alignment:
Q  15 ttaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaat 113  Q
    ||||||| |||||||||||| |||| |  |||||| ||||||||||  ||||||  | ||||||||||||| ||||| |||||||| | ||||||||| |    
T  14764505 ttaggtgttagtggttcacagtaaagtgcaatagaccctacatgatttaacaactattttttaaagaaaaaatcaaatggttaaaataaaaaaatttagt 14764406  T
Q  114 aaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgac 185  Q
    | ||  || |||| |||||||||||||| ||||||||||| || ||| ||||||||||||||||||||||||    
T  14764405 atggcgtatggtggaccacctttaaataaggttcaccttaaacatttaatgttaaaaactaacagagatgac 14764334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 23081965 - 23082167
Alignment:
Q  14 attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaa 112  Q
    |||||||| |||||||| ||| ||||||| |||||| | ||||| ||| ||||| || |||||||| ||||| |||||  |||||||   |||||||||     
T  23081965 attaggtgttagtggtttacactaaaatacaatagaccttacattatccaacaatccacttttaaaaaaaaaatcaaaatgttaaaattaaaaaatttat 23082064  T
Q  113 taaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacataa 212  Q
    ||||||  | |||| |||||||||||||||||||||| |||||  |||| |||||||||||||| || | ||||||| |||| |||| ||||||| ||||    
T  23082065 taaggtccatggtggaccacctttaaatatggttcactttagatatttggtgttaaaaactaacggaaaggaccaaaagaggcaacgacagaaaatataa 23082164  T
Q  213 ggg 215  Q
    |||    
T  23082165 ggg 23082167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 26055987 - 26056162
Alignment:
Q  15 ttaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaa-aaatcaaagggttaaaacataaaaatttaat 113  Q
    ||||||| ||||||||||||  ||| || |||||| ||||||| ||  |||   |||||||||||||| |||||||| ||||||||   |||||||||||    
T  26055987 ttaggtgttagtggttcacaggaaagtacaatagaccctacataattcaacggtcctcttttaaagaataaatcaaatggttaaaattaaaaaatttaat 26056086  T
Q  114 aaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    | ||  || |||| |||||||||||||||||||||| |||||| ||||||||||||| ||||| |||| |||||||    
T  26056087 acggcctatggtgaaccacctttaaatatggttcactttagacttttgatgttaaaatctaacggagaggaccaaa 26056162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 215
Target Start/End: Original strand, 22766670 - 22766861
Alignment:
Q  26 tggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa--tcaaagggttaaaacataaaaatttaataaggtttacg 123  Q
    ||||| ||| ||||||| |||||| | ||||| ||| ||||| || |||||||| |||||  ||||| ||||||||   |||||||||  |||||  | |    
T  22766670 tggtttacactaaaatacaatagaccttacattatccaacaatccacttttaaaaaaaaaaatcaaaaggttaaaattaaaaaatttatgaaggtccatg 22766769  T
Q  124 gtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacataaggg 215  Q
    ||| |||||||||||||||||||||| |||||  |||| |||||||||||||| || | ||||||| |||| |||| |||||||||||||||    
T  22766770 gtggaccacctttaaatatggttcactttagatatttggtgttaaaaactaacggaaaggaccaaaagaggcaacgacagaaaacataaggg 22766861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 44977487 - 44977421
Alignment:
Q  1 aaagtgagaaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaa 67  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||    
T  44977487 aaagtgagaaaaaattaggtggtagtggttcacaattaaatacaatagaccctacatgatcaaacaa 44977421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 49141434 - 49141507
Alignment:
Q  112 ataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgac 185  Q
    ||||||| || |||| | || |||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  49141434 ataaggtctatggtggaacaactttaaatatggttcaccttagacatttgatgttaaaaactaacggagatgac 49141507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 51726754 - 51726846
Alignment:
Q  85 atcaaagggttaaaacataaaa-atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaac 176  Q
    |||||| |||||||| |||||| |||||||||||| || |||| ||||||| ||||  ||||||||||||||| ||| | |||||||||||||    
T  51726754 atcaaacggttaaaaaataaaagatttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaactaac 51726846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 48935105 - 48935151
Alignment:
Q  169 aaactaacagagatgaccaaatgaggtaacggcagaaaacataaggg 215  Q
    |||||||| |||||||||||| ||||||||||||||| |||||||||    
T  48935105 aaactaacggagatgaccaaaagaggtaacggcagaagacataaggg 48935151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 233
Target Start/End: Complemental strand, 9415828 - 9415681
Alignment:
Q  85 atcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatga 184  Q
    |||||||||||||||  ||||||| |||||||||  | |||| ||||||| | |   ||||||||||||||  |||   |||||||||||||  ||  ||    
T  9415828 atcaaagggttaaaat-taaaaatctaataaggtgcatggtggaccacctatgatgctggttcaccttagatatttatggttaaaaactaacgaagtgga 9415730  T
Q  185 ccaaatgaggtaacggcagaaaacataaggggccagtttaagacatttt 233  Q
    |||||  ||||||||||| || ||||||||| ||| |||||||| ||||    
T  9415729 ccaaaataggtaacggcataatacataagggaccaatttaagacgtttt 9415681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 8092789 - 8092698
Alignment:
Q  99 acataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaat 190  Q
    |||||| ||||||||||||| || |||| ||||||| ||||  ||||||||||||||  ||| | |||||| |||||| || | ||||||||    
T  8092789 acataacaatttaataaggtctatggtggaccacctataaagttggttcaccttagatatttaaggttaaatactaacggaaaggaccaaat 8092698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 14169798 - 14169720
Alignment:
Q  111 aataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||||||| || ||||  |||||| ||||  ||||||||||||||| ||| | |||||||||||||||| | |||||||    
T  14169798 aataaggtctatggtgggccacctataaagttggttcaccttagacatttaaggttaaaaactaacagataagaccaaa 14169720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 21277177 - 21277109
Alignment:
Q  107 atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaa 175  Q
    |||||||||||| || |||| ||||||| ||||  ||||||||||||||| ||| | || |||||||||    
T  21277177 atttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggtcaaaaactaa 21277109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 38281115 - 38281007
Alignment:
Q  9 aaaaaattaggtggtagtggttcacaataaaatataatagat-cctacatgatcaaacaaccctcttttaaagaaaa-atcaaagggttaaaacataaaa 106  Q
    ||||||||||||||| ||||||||  ||||  || ||||||| ||| ||||||| ||||| | || |||||| |||| |||||| |||||||| | ||||    
T  38281115 aaaaaattaggtggttgtggttcattataatctacaatagatccctccatgatccaacaatcttcatttaaataaaagatcaaacggttaaaataaaaaa 38281016  T
Q  107 atttaataa 115  Q
    | |||||||    
T  38281015 aattaataa 38281007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 53808600 - 53808419
Alignment:
Q  9 aaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaa 107  Q
    |||| |||||||| |||||||||||| ||||||| |||||||||||||||||| ||| |  |||||||||||||||| ||||||||||||||  ||||||    
T  53808600 aaaatattaggtgttagtggttcacagtaaaatacaatagatcctacatgatccaacgattctcttttaaagaaaaaatcaaagggttaaaatttaaaaa 53808501  T
Q  108 tttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||||||||||||| |||| |||||||||| ||||| |||||||||||  ||||||||||||||||||  ||||||||||||    
T  53808500 tttaataaggtttatggtggaccacctttagatatgattcaccttagaaatttgatgttaaaaactaatggagatgaccaaa 53808419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 39133294 - 39133092
Alignment:
Q  14 attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaa 112  Q
    |||||||| ||||||||||||||||| || |||||| | ||||||||  |||   ||||||||||||||||| ||||| ||||||||   |||||||||     
T  39133294 attaggtgttagtggttcacaataaagtacaatagaccttacatgattcaactgtcctcttttaaagaaaaaatcaaatggttaaaattaaaaaatttag 39133195  T
Q  113 taaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacataa 212  Q
    |||||  || |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||  |||| ||||||    
T  39133194 taaggcatatggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacagagaggaccaaaagaggtaacgagagaagacataa 39133095  T
Q  213 ggg 215  Q
    |||    
T  39133094 ggg 39133092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 17349941 - 17350143
Alignment:
Q  14 attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaa 112  Q
    |||||||| ||||||||||||||||| |  |||||| ||||||||||  |||   ||||||||||||||||| ||||| ||||||||   |||||||||     
T  17349941 attaggtgttagtggttcacaataaagttcaatagaccctacatgattcaacggtcctcttttaaagaaaaaatcaaatggttaaaattaaaaaatttag 17350040  T
Q  113 taaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacataa 212  Q
    |||||  || |||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| |||||||| | |||| ||||||    
T  17350041 taaggcatatggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacggagaggaccaaaagaggtaacaggagaagacataa 17350140  T
Q  213 ggg 215  Q
    |||    
T  17350141 ggg 17350143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 34902828 - 34903032
Alignment:
Q  9 aaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaa 107  Q
    |||| |||||||| |||||||||||| ||||| | |||| | ||||||||||| ||||| |||||||||| |||||| ||||| ||||||||   |||||    
T  34902828 aaaatattaggtgttagtggttcacactaaaaaacaataaaccctacatgatccaacaatcctcttttaatgaaaaaatcaaaaggttaaaattaaaaaa 34902927  T
Q  108 tttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaa 207  Q
    |||| ||||||  | |||| |||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||||||| || |||||| |||||||    
T  34902928 tttactaaggtccatggtgcaccacctttaaatatggttcactttagacatttggtgttaaaaactaacggagatgaccaaaaga-gtaacgacagaaaa 34903026  T
Q  208 cataag 213  Q
    ||||||    
T  34903027 cataag 34903032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 47765716 - 47765539
Alignment:
Q  14 attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa--tcaaagggttaaaacataaaaattta 111  Q
    |||| ||| |||||||||||  ||||||| |||||| ||||||||||| ||||| |||||||||||||||||  ||||| ||||||||  |||||||| |    
T  47765716 attaagtgttagtggttcacgctaaaatacaatagaccctacatgatccaacaatcctcttttaaagaaaaaaatcaaaaggttaaaatttaaaaattca 47765617  T
Q  112 ataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    ||||||| || |||| |||| ||||||  ||||||||||| |||  ||||||||||||||||||| ||||||||||||    
T  47765616 ataaggtctatggtggaccatctttaacaatggttcacctaagatatttgatgttaaaaactaacggagatgaccaaa 47765539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 233
Target Start/End: Original strand, 7483379 - 7483584
Alignment:
Q  29 ttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaataaggtttacggtgt 127  Q
    |||||| |||| ||||||||| || |||||||  |||   ||||||||||||||||| ||||| ||||||||   ||||| |||||||||  || ||||     
T  7483379 ttcacagtaaagtataatagaccccacatgattcaacggtcctcttttaaagaaaaaatcaaatggttaaaattaaaaaaattaataaggcatatggtgg 7483478  T
Q  128 accacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacataaggggccagtttaaga 227  Q
     |||| ||| ||||||||||||||||||  ||||||||||||||||||| |||||||||||| |||||||||| |||| ||||||||| ||| |||||||    
T  7483479 gccactttttaatatggttcaccttagatatttgatgttaaaaactaacggagatgaccaaaagaggtaacggaagaagacataagggaccaatttaaga 7483578  T
Q  228 catttt 233  Q
    | ||||    
T  7483579 cgtttt 7483584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 8371510 - 8371321
Alignment:
Q  1 aaagtgagaaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaa 99  Q
    |||||||||||| |||||||| |||||||| |||||| |||| ||||||   || |||||| ||||| ||||||||||||||||| ||||||||||||||    
T  8371510 aaagtgagaaaatattaggtgttagtggtttacaatagaatacaatagactatatatgatccaacaatcctcttttaaagaaaaaatcaaagggttaaaa 8371411  T
Q  100 cataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
       ||||||||| ||||||  | |||| ||||||| ||| || ||||| | |||||  ||||||||||||||||||| |||| |||||||    
T  8371410 ttaaaaaatttactaaggtccatggtggaccacctctaagtacggttcgctttagatatttgatgttaaaaactaacggagaggaccaaa 8371321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 11219706 - 11219531
Alignment:
Q  15 ttaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaat 113  Q
    ||||||| ||||||||||||  ||| || |||||| ||||||| ||  |||   ||||||||||||||||| ||||| ||||||||   |||||||||||    
T  11219706 ttaggtgttagtggttcacaggaaagtacaatagaccctacataattcaacggtcctcttttaaagaaaaaatcaaatggttaaaattaaaaaatttaat 11219607  T
Q  114 aaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    | | | || |||| ||||||||||||||||||||||||||||  ||||||||||||| ||||| ||||||||||||    
T  11219606 acgatctatggtgaaccacctttaaatatggttcaccttagaattttgatgttaaaatctaacggagatgaccaaa 11219531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 32979379 - 32979171
Alignment:
Q  1 aaagtgagaaaaa-attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaa-aatcaaagggttaaa 98  Q
    ||||||||||||  |||||||| ||||| || |||||||| || |||| | ||||||| ||  ||||  | ||||||||||||  ||||||| |||||||    
T  32979379 aaagtgagaaaagtattaggtgttagtgatttacaataaagtacaatataccctacataattcaacagtcatcttttaaagaatcaatcaaatggttaaa 32979280  T
Q  99 acataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaac 198  Q
    |   |||||||||||| ||| || |||| ||||||||||||||| ||||||||||| | ||| ||||||||||||||| |||| ||||||| |||||||     
T  32979279 attaaaaaatttaatacggtctatggtgaaccacctttaaatatagttcaccttagtcttttaatgttaaaaactaacggagaggaccaaaagaggtaat 32979180  T
Q  199 ggcagaaaa 207  Q
     ||||||||    
T  32979179 tgcagaaaa 32979171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 19622183 - 19622106
Alignment:
Q  112 ataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    ||||||| ||||||| |||||||||||| || |||||||||| || ||||||||| ||||||||| |||| |||||||    
T  19622183 ataaggtctacggtggaccacctttaaacatagttcaccttaaacatttgatgttgaaaactaacggagaggaccaaa 19622106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 49333198 - 49333090
Alignment:
Q  74 tttaaagaaaaatcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaact 173  Q
    |||||| |||||||||| |||||||| ||||||  |||||||||| || |||| ||||||  ||||  || |||||||||||||||| | || |||||||    
T  49333198 tttaaaaaaaaatcaaacggttaaaa-ataaaagattaataaggtctatggtggaccacccataaagttgattcaccttagacgtttaaggtgaaaaact 49333100  T
Q  174 aacagagatg 183  Q
    ||| ||||||    
T  49333099 aaccgagatg 49333090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 31638307 - 31638210
Alignment:
Q  103 aaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttag--acgtttgatgttaaaaactaacagagatgaccaaatgaggtaac 198  Q
    ||||||||| |||||  || |||  |||||||||||||||||||||||||||  |  ||||||||||||||||| | |||| || |||| ||||||||    
T  31638307 aaaaatttagtaaggcgtatggtagaccacctttaaatatggttcaccttagatatatttgatgttaaaaactagcggagaggatcaaaagaggtaac 31638210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 12062291 - 12062399
Alignment:
Q  81 aaaaatcaaagggttaaaacataaaa-atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacaga 179  Q
    |||||||||| |||||||| ||| || |||||||||||| || |||| | ||||| ||||  ||||||||||||||| ||| | ||||||||||||  ||    
T  12062291 aaaaatcaaatggttaaaa-atacaagatttaataaggtatatggtggatcacctataaagttggttcaccttagacatttaaggttaaaaactaatgga 12062389  T
Q  180 gatgaccaaa 189  Q
     |||||||||    
T  12062390 aatgaccaaa 12062399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 35174309 - 35174397
Alignment:
Q  101 ataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||||||||||||||||| |   ||| || |||| ||||  ||||||||||||||| ||| | |||||||| ||||||| |||||||||    
T  35174309 ataaaaatttaataaggtctctcgtggactacctataaagttggttcaccttagacttttaaggttaaaaattaacagaaatgaccaaa 35174397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 24753462 - 24753505
Alignment:
Q  134 tttaaatatggttcaccttagacgtttgatgttaaaaactaaca 177  Q
    |||||| |||||||||||||||| ||||| ||||||||||||||    
T  24753462 tttaaagatggttcaccttagacatttgaagttaaaaactaaca 24753505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 32974213 - 32974264
Alignment:
Q  164 gttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacataaggg 215  Q
    |||||||  |||| |||||||||||| ||||||||||||||| |||||||||    
T  32974213 gttaaaatgtaacggagatgaccaaaagaggtaacggcagaagacataaggg 32974264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 27234689 - 27234755
Alignment:
Q  167 aaaaactaacagagatgaccaaatgaggtaacggcagaaaacataaggggccagtttaagacatttt 233  Q
    |||||||||| | || |||||||  |||||||||||||| |||| |||| ||||||| |||||||||    
T  27234689 aaaaactaacggcgaggaccaaaataggtaacggcagaatacatgagggaccagtttgagacatttt 27234755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 39287591 - 39287545
Alignment:
Q  169 aaactaacagagatgaccaaatgaggtaacggcagaaaacataaggg 215  Q
    |||||||| |||| ||||||| ||||||||| |||||||||||||||    
T  39287591 aaactaacggagaggaccaaaagaggtaacgacagaaaacataaggg 39287545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 26798736 - 26798797
Alignment:
Q  7 agaaaaaattaggtggtagtggttcacaataaaatataataga-tcctacatgatcaaacaa 67  Q
    ||||||||||||||||| ||||||||| ||||  || |||||| |||| |||||||||||||    
T  26798736 agaaaaaattaggtggttgtggttcaccataagctacaatagattcctccatgatcaaacaa 26798797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 14108928 - 14109078
Alignment:
Q  32 acaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaataaggtttacggtgtacc 130  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | ||| ||||||||  ||||| ||||||||||| || |||| |||    
T  14108928 acaataaaatataatagatcctacatgatccaacaatcctcttttaaagaaaaaattaaaaggttaaaatttaaaattttaataaggtctatggtggacc 14109027  T
Q  131 acctttaaatatggttcaccttagacgtttgatgttaaaaactaacagaga 181  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  14109028 acctttaaacatggttcaccttagacatttgatgttaaaaactaacggaga 14109078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 14418885 - 14419035
Alignment:
Q  32 acaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaataaggtttacggtgtacc 130  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | ||| ||||||||  ||||| ||||||||||| || |||| |||    
T  14418885 acaataaaatataatagatcctacatgatccaacaatcctcttttaaagaaaaaattaaaaggttaaaatttaaaattttaataaggtctatggtggacc 14418984  T
Q  131 acctttaaatatggttcaccttagacgtttgatgttaaaaactaacagaga 181  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  14418985 acctttaaacatggttcaccttagacatttgatgttaaaaactaacggaga 14419035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 4167739 - 4167556
Alignment:
Q  4 gtgagaaaaa-attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaaca 101  Q
    |||||||||| ||||||||   |||||| ||||||||||| || ||| ||||||| ||| ||||| ||||||||||||||||| ||||| |||| |||      
T  4167739 gtgagaaaaatattaggtgtcggtggtttacaataaaatacaacagaccctacatcatccaacaaacctcttttaaagaaaaaatcaaaaggttgaaatt 4167640  T
Q  102 taaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgac 185  Q
    ||||||||||||||| | || |||| |||||||||||| |||||||||||||||  |||||||||||||| | ||||| |||||    
T  4167639 taaaaatttaataagatctatggtggaccacctttaaacatggttcaccttagaaatttgatgttaaaaattgacagaaatgac 4167556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 215
Target Start/End: Original strand, 24494958 - 24495092
Alignment:
Q  81 aaaaatcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagag 180  Q
    |||||||||| ||||||||   ||||| |||||||||  || |||| ||||| |||||||||||||||| |||||| ||||||||||||||||||| |||    
T  24494958 aaaaatcaaatggttaaaattaaaaaaattaataaggcatatggtggaccacttttaaatatggttcactttagacatttgatgttaaaaactaacggag 24495057  T
Q  181 atgaccaaatgaggtaacggcagaaaacataaggg 215  Q
    | ||||||| |||||||| | |||| |||||||||    
T  24495058 aggaccaaacgaggtaacagaagaagacataaggg 24495092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 38406282 - 38406119
Alignment:
Q  26 tggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaataaggtttacgg 124  Q
    ||||| ||||||||||| ||||||   || |||||| ||||| ||||||||||| ||||| | ||| |||| |||  ||||||||||||||||| || |     
T  38406282 tggtttacaataaaatacaatagactttaaatgatccaacaatcctcttttaaacaaaaaattaaaaggttgaaatttaaaaatttaataaggtctatg- 38406184  T
Q  125 tgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    || || |||||||||||||||||||||||||| |||||||||||||| |||| || | |||||||    
T  38406183 tggactacctttaaatatggttcaccttagacatttgatgttaaaaattaacggaaaggaccaaa 38406119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 131832 - 132009
Alignment:
Q  9 aaaaaattaggtggtagtggttcacaataaaatataatagatc-ctacatgatcaaacaaccctcttttaaagaaaa-atcaaagggttaaaacataaaa 106  Q
    ||||||||||||||| ||||||||  ||||  || |||||||| || ||||||| ||||| | || ||||||||||| |||||| ||||||||   ||||    
T  131832 aaaaaattaggtggttgtggttcattataagctacaatagatctctccatgatccaacaatcttcatttaaagaaaagatcaaacggttaaaattaaaaa 131931  T
Q  107 atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatga 184  Q
    ||||||||| ||||| |||   |||| |  |||  ||||||||||||||| ||| | ||||||||||||| |||||||    
T  131932 atttaataaagtttatggtagtccacttacaaagttggttcaccttagacatttaaggttaaaaactaacggagatga 132009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 18801505 - 18801326
Alignment:
Q  2 aagtgagaaaaa-attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaa-gaaaaatcaaagggttaaaa 99  Q
    |||||||||||| |||||||| ||  ||  |||||||||||| ||||||  |||||||||| ||||| |||||||||||  |||||| ||||||||| ||    
T  18801505 aagtgagaaaaatattaggtgttataggcacacaataaaatacaatagactctacatgatccaacaatcctcttttaaacaaaaaattaaagggttacaa 18801406  T
Q  100 cataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacaga 179  Q
       ||   |||| ||||||  | |||| | |||||| |||||||||||||||||||  |||| ||||||||| |||||||    
T  18801405 ttaaattttttactaaggtccatggtggatcaccttgaaatatggttcaccttagagatttgctgttaaaaattaacaga 18801326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 19848690 - 19848839
Alignment:
Q  31 cacaataaaatataatagatcctacatgatcaaacaaccctcttttaaa-gaaaaatcaaagggttaaaacataaaaatttaataaggtttacggtgtac 129  Q
    |||| ||||||| ||||||  |||||||||| ||||| |||||||||||  |||||||||||||||| ||   ||   |||| ||||||  | |||| |     
T  19848690 cacagtaaaatacaatagactctacatgatccaacaatcctcttttaaacaaaaaatcaaagggttacaattaaattttttactaaggtccatggtggat 19848789  T
Q  130 cacctttaaatatggttcaccttagacgtttgatgttaaaaactaacaga 179  Q
    |||||| |||||||||||||||||||  |||| ||||||||| |||||||    
T  19848790 caccttgaaatatggttcaccttagagatttgctgttaaaaattaacaga 19848839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 25154847 - 25154951
Alignment:
Q  85 atcaaagggttaaaacataaaa-atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatg 183  Q
    |||||| |||||||| |||||| |||||||||| |||| |||| ||||| | ||||  ||||||||||||||| ||| | ||||||||| ||| ||||||    
T  25154847 atcaaacggttaaaa-ataaaagatttaataagttttatggtggaccacttataaagttggttcaccttagacatttaaggttaaaaacaaacggagatg 25154945  T
Q  184 accaaa 189  Q
    ||||||    
T  25154946 accaaa 25154951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 233
Target Start/End: Complemental strand, 44113633 - 44113486
Alignment:
Q  85 atcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatga 184  Q
    |||||||||||||||  ||||||| |||||||||  | |||| ||||||| | |   ||||||||||||||  |||   |||||||||||||  ||  ||    
T  44113633 atcaaagggttaaaat-taaaaatctaataaggtgcatggtggaccacctatgatgctggttcaccttagatatttatggttaaaaactaacgaagtgga 44113535  T
Q  185 ccaaatgaggtaacggcagaaaacataaggggccagtttaagacatttt 233  Q
    |||||  |||||||||||||| ||||||||| ||| ||| |||| ||||    
T  44113534 ccaaaataggtaacggcagaatacataagggaccaatttgagacgtttt 44113486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 40930606 - 40930527
Alignment:
Q  102 taaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagaga 181  Q
    ||||||||||||||||| || || | | |||||| ||  ||||| |||||||||  |||||||||||||||||| |||||    
T  40930606 taaaaatttaataaggtatatgggggatcaccttgaatcatggtccaccttagatatttgatgttaaaaactaatagaga 40930527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 35315077 - 35315199
Alignment:
Q  15 ttaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaag-aaaaatcaaagggttaaaacataaaaatttaat 113  Q
    ||||||| |||| ||||||| |||| || || ||| ||||||||||  |||||   |||||||||| |||||| ||| |||||||| | ||||||||| |    
T  35315077 ttaggtgttagtagttcacagtaaagtacaaaagaccctacatgattcaacaattatcttttaaagaaaaaataaaatggttaaaataaaaaaatttagt 35315176  T
Q  114 aaggtttacggtgtaccaccttt 136  Q
    ||||  || |||| |||||||||    
T  35315177 aaggcatatggtggaccaccttt 35315199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 36673831 - 36673897
Alignment:
Q  169 aaactaacagagatgaccaaatgaggtaacggcagaaaacataaggggccagtttaagacattttat 235  Q
    |||||||| |||| ||||||| ||||||||| ||||| ||||||||| |||  || |||||||||||    
T  36673831 aaactaactgagaggaccaaaagaggtaacgacagaagacataagggaccaaattgagacattttat 36673897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 46458646 - 46458728
Alignment:
Q  107 atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||||||||||| || |||| || |||| ||||  ||||||||||||||| ||| | ||||||||| ||| |||| |||||||    
T  46458646 atttaataaggtctatggtggactacctataaagttggttcaccttagacatttaaggttaaaaacaaacggagaggaccaaa 46458728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 4857347 - 4857310
Alignment:
Q  144 gttcaccttagacgtttgatgttaaaaactaacagaga 181  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  4857347 gttcaccttagacatttgatgttaaaaactaacggaga 4857310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 21010323 - 21010513
Alignment:
Q  1 aaagtgagaaaaa-attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaa 98  Q
    ||||||||||||| |||||||| |||||||||| ||||||||| |||||| ||||| ||||| |||||   |||||| |||||||| | |||||||||||    
T  21010323 aaagtgagaaaaatattaggtgttagtggttcataataaaatacaatagaccctacctgatccaacaattatctttttaagaaaaaattaaagggttaaa 21010422  T
Q  99 acataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |  |||||||||||||||||||| | |  |||||||||||||| ||||||| |||||| ||||||||||| |||||||||||| |||||||    
T  21010423 atttaaaaatttaataaggtttatgatagaccacctttaaatacggttcacattagacatttgatgttaacaactaacagagaggaccaaa 21010513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 41296288 - 41296495
Alignment:
Q  9 aaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaag-aaaaatcaaagggttaaaacataaaaa 107  Q
    |||| |||||||| ||||| |||||| ||||||| |||||||||||||||||| ||||| |||||||||||| |||||||||| |||||| |   |||||    
T  41296288 aaaatattaggtgttagtgattcacactaaaatacaatagatcctacatgatcgaacaatcctcttttaaagaaaaaatcaaaaggttaatattaaaaaa 41296387  T
Q  108 tttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaa 207  Q
    |||| |||| |  | |||| ||||||||| |||||| ||||| |||||| |||| |||||||||||||| |||| ||||||| ||| ||||| || ||||    
T  41296388 tttactaagatccatggtgcaccaccttttaatatgattcactttagacatttggtgttaaaaactaacggagaggaccaaaagagataacgacaaaaaa 41296487  T
Q  208 cataaggg 215  Q
    ||||||||    
T  41296488 cataaggg 41296495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 14714769 - 14714569
Alignment:
Q  14 attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaa 112  Q
    |||||||| |||||||||||| ||||||| ||||||  |||||||||  |||   | ||||||||||||||| ||||| ||||  ||   ||||| ||||    
T  14714769 attaggtgttagtggttcacagtaaaatacaatagactctacatgattcaacggtcatcttttaaagaaaaaatcaaatggttgcaattaaaaaaattaa 14714670  T
Q  113 taaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacataa 212  Q
    |||||  || |||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| | |||||||| |||| ||||||    
T  14714669 taaggcgtatggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacggagaggaccaaaagtggtaacggaagaagacataa 14714570  T
Q  213 g 213  Q
    |    
T  14714569 g 14714569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 29424463 - 29424627
Alignment:
Q  25 gtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaag-aaaaatcaaagggttaaaacataaaaatttaataaggtttacg 123  Q
    |||||| |||||||| || |||||| | ||||||||| ||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||| || |    
T  29424463 gtggtttacaataaatta-aatagaccttacatgatccaacaatcctcttttaaaggaaaaatcaaaaggttaaaatttaaaaatttaataaggtctatg 29424561  T
Q  124 gtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
     || |||||||||||| |||||||| ||||||| ||||||||||  |||||||||||| |||||||    
T  29424562 atggaccacctttaaacatggttcatcttagacatttgatgttagtaactaacagagaggaccaaa 29424627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 233
Target Start/End: Complemental strand, 26205222 - 26205070
Alignment:
Q  81 aaaaatcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagag 180  Q
    |||||||||| ||||||||  |||||| |||||||||  || |||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||| |||    
T  26205222 aaaaatcaaatggttaaaatttaaaaaattaataaggcatatggtggaccacttttaagtatggttcaccttagacatttgatgttaaaaactaacggag 26205123  T
Q  181 atgaccaaatgaggtaacggcagaaaacataaggggccagtttaagacatttt 233  Q
    | ||||||| |||||||||| |||| ||||||||| ||| ||| |||| ||||    
T  26205122 aggaccaaacgaggtaacggaagaagacataagggaccaatttgagacgtttt 26205070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 12853108 - 12852987
Alignment:
Q  69 cctcttttaaagaa-aaatcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgtta 167  Q
    |||||||||||||| |||||||| ||||||||   |||||||||||| ||| || |||| ||||||||||||||||||||||||||||  ||||||||||    
T  12853108 cctcttttaaagaataaatcaaatggttaaaattcaaaaatttaatacggtctatggtgaaccacctttaaatatggttcaccttagatttttgatgtta 12853009  T
Q  168 aaaactaacagagatgaccaaa 189  Q
    ||| ||||| ||||||||||||    
T  12853008 aaatctaacggagatgaccaaa 12852987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 233
Target Start/End: Complemental strand, 4512371 - 4512163
Alignment:
Q  26 tggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaataaggtttacgg 124  Q
    ||||||||| |||| ||||||||| || |||||||  |||   | ||||||||||||||| ||||| ||| ||||   ||||| |||||||||  || ||    
T  4512371 tggttcacagtaaagtataatagaccccacatgattcaacggtcatcttttaaagaaaaaatcaaatggtcaaaattaaaaaaattaataaggcatatgg 4512272  T
Q  125 tgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacataaggggccagttta 224  Q
    || ||||| ||| ||||||||||||||||||  ||||||||||||||||||  |||| ||||||| |||||||||| |||| ||| ||||| ||| |||     
T  4512271 tggaccactttttaatatggttcaccttagatatttgatgttaaaaactaatggagaggaccaaaagaggtaacggaagaagacacaagggaccaatttg 4512172  T
Q  225 agacatttt 233  Q
    |||| ||||    
T  4512171 agacgtttt 4512163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 171
Target Start/End: Original strand, 7983564 - 7983692
Alignment:
Q  44 aatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatat 142  Q
    |||||| ||||||| ||| ||||| ||||||||||||||||| ||||| || | |||  ||||||||||||||| | || |||| |||||||||||| ||    
T  7983564 aatagaccctacatcatccaacaaacctcttttaaagaaaaaatcaaaaggatgaaatttaaaaatttaataagatctatggtggaccacctttaaacat 7983663  T
Q  143 ggttcaccttagacgtttgatgttaaaaa 171  Q
    |||||||||||||| ||||||||||||||    
T  7983664 ggttcaccttagacatttgatgttaaaaa 7983692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 3528089 - 3528278
Alignment:
Q  1 aaagtgagaaaaa-attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaag--aaaaatcaaagggttaa 97  Q
    ||||||||||||| |||||||| ||   ||||||| ||||||| |||| | ||||||| ||  ||    ||||||||||||  |||||||||  ||||||    
T  3528089 aaagtgagaaaaatattaggtgttataagttcacagtaaaatacaatacaccctacataattcaatggtcctcttttaaaggaaaaaatcaactggttaa 3528188  T
Q  98 aacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgacca 187  Q
    ||   |||||||||||| ||| || |||| ||||||||||||||||||||||||||||| |||| | ||||||||||| ||||| |||||    
T  3528189 aattaaaaaatttaatacggtctatggtgaaccacctttaaatatggttcaccttagacttttgctattaaaaactaatagagaagacca 3528278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 23177952 - 23177775
Alignment:
Q  13 aattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaattta 111  Q
    ||||||||| |||||||||||| |||| || |||||| || |||| ||  |||   || | |||||||||||| ||||| ||||||||    ||||||||    
T  23177952 aattaggtgttagtggttcacagtaaagtacaatagacccgacataattcaacggtccgcatttaaagaaaaaatcaaatggttaaaattagaaaattta 23177853  T
Q  112 ataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    ||||| | ||||||| |||| |||||||||||||||| ||||||  ||| ||||||||||||||| |||| |||||||    
T  23177852 ataagatctacggtgaaccatctttaaatatggttcatcttagattttttatgttaaaaactaacggagaggaccaaa 23177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 23589209 - 23589032
Alignment:
Q  13 aattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaattta 111  Q
    ||||||||| |||||||||||| |||| || |||||| || |||| ||  |||   || | |||||||||||| ||||| ||||||||    ||||||||    
T  23589209 aattaggtgttagtggttcacagtaaagtacaatagacccgacataattcaacggtccgcatttaaagaaaaaatcaaatggttaaaattagaaaattta 23589110  T
Q  112 ataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    ||||| | ||||||| |||| |||||||||||||||| ||||||  ||| ||||||||||||||| |||| |||||||    
T  23589109 ataagatctacggtgaaccatctttaaatatggttcatcttagattttttatgttaaaaactaacggagaggaccaaa 23589032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 45047588 - 45047447
Alignment:
Q  44 aatagatcctacatgatcaaacaaccctcttttaaagaaaaatcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatg 143  Q
    |||||||||||||||||| |||||   | ||||||||||||| ||||||||||||| |      |||| ||||||  | |||| ||||||||||||||||    
T  45047588 aatagatcctacatgatccaacaataatattttaaagaaaaaacaaagggttaaaataatttcttttactaaggtacatggtggaccacctttaaatatg 45047489  T
Q  144 gttcaccttagacgtttgatgttaaaaactaacagagatgac 185  Q
    ||||||||||||| |||||| ||||||| |||| || |||||    
T  45047488 gttcaccttagacatttgatattaaaaattaacggaaatgac 45047447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 6708819 - 6708968
Alignment:
Q  15 ttaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaa-aaatcaaagggttaaaacataaaaatttaat 113  Q
    ||||||| ||||||||||||  ||| |  |||||| ||||||| ||  |||   ||| |||||||||| |||||||| ||||||||    ||||||||||    
T  6708819 ttaggtgttagtggttcacaggaaagtgcaatagaccctacataattcaacggtccttttttaaagaataaatcaaatggttaaaattagaaaatttaat 6708918  T
Q  114 aaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgat 163  Q
    | |||||| |||| |||||||||||||||||||||||| |||| ||||||    
T  6708919 acggtttatggtgaaccacctttaaatatggttcacctcagacttttgat 6708968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 3532441 - 3532299
Alignment:
Q  44 aatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatat 142  Q
    |||||| ||||||||||  ||||||  | ||||||||||||| ||||| |||||||| | ||   |||| ||| |  || |||| |||||||||||||||    
T  3532441 aatagaccctacatgatttaacaactattttttaaagaaaaaatcaaatggttaaaataaaattttttagtaatgcatatggtggaccacctttaaatat 3532342  T
Q  143 ggttcaccttagacgtttgatgttaaaaactaacagagatgac 185  Q
    ||||||||||| || ||| ||||||||||  ||||||||||||    
T  3532341 ggttcaccttaaacatttaatgttaaaaatcaacagagatgac 3532299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 8537152 - 8537069
Alignment:
Q  150 cttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacataaggggccagtttaagacatttt 233  Q
    ||||||| ||| | ||||||||||||| ||||||||||||  || ||||| ||||| ||||||||| ||| ||| |||||||||    
T  8537152 cttagacatttaaggttaaaaactaacggagatgaccaaaatagataacgacagaatacataagggaccaatttgagacatttt 8537069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 45047684 - 45047624
Alignment:
Q  1 aaagtgagaaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatc 61  Q
    ||||| |||||| ||| |||| |||||||||||| ||||| | ||||||||||||||||||    
T  45047684 aaagtaagaaaatatttggtgatagtggttcacagtaaaacacaatagatcctacatgatc 45047624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 2305661 - 2305615
Alignment:
Q  169 aaactaacagagatgaccaaatgaggtaacggcagaaaacataaggg 215  Q
    |||||||| |||| ||||||| ||||||||||||||| |||||||||    
T  2305661 aaactaacggagaggaccaaaagaggtaacggcagaagacataaggg 2305615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 7037185 - 7037067
Alignment:
Q  72 cttttaaagaaaa-atcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaa 170  Q
    |||||||| |||| |||||| ||||||||   ||| |||||||||||||||||||| | ||||| ||||  || |||||||||||  ||| | |||||||    
T  7037185 cttttaaaaaaaagatcaaacggttaaaaatgaaagatttaataaggtttacggtggatcacctataaagttgattcaccttagatatttaaggttaaaa 7037086  T
Q  171 actaacagagatgaccaaa 189  Q
    |  ||| || |||||||||    
T  7037085 ataaacggaaatgaccaaa 7037067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 14509391 - 14509310
Alignment:
Q  108 tttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    ||||||||||| || |||| ||||||| ||||  ||||| ||||||||| ||| | |||||||| |||| |||| |||||||    
T  14509391 tttaataaggtctatggtggaccacctataaagttggtttaccttagacatttaaggttaaaaattaacggagaggaccaaa 14509310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 25570803 - 25570872
Alignment:
Q  107 atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaac 176  Q
    |||||||||||| || |||| ||||||| ||||  ||||||||||||||| ||| |  ||||||||||||    
T  25570803 atttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaagtttaaaaactaac 25570872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 2306651 - 2306699
Alignment:
Q  164 gttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacataa 212  Q
    |||| |||||||| |||| ||||||| ||||||||||||||| ||||||    
T  2306651 gttacaaactaacggagaggaccaaaagaggtaacggcagaagacataa 2306699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 18693919 - 18693753
Alignment:
Q  69 cctcttttaaagaaaaatcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaa 168  Q
    |||||||||||||||||||||| | ||||||   |||||||||||| ||| || |||| |||||||||| |||||||||||||||||  |||||||||||    
T  18693919 cctcttttaaagaaaaatcaaatgattaaaattaaaaaatttaatacggtctatggtgaaccacctttatatatggttcaccttagagttttgatgttaa 18693820  T
Q  169 aaactaacagagatgaccaaatgaggtaacggcagaaaacataaggggccagtttaagacattttat 235  Q
    ||||||||||||| ||||||| ||||||||| ||||| |  || ||| |||| || |||||||||||    
T  18693819 aaactaacagagaggaccaaaagaggtaacgacagaagatttatgggaccagattgagacattttat 18693753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 7426929 - 7426760
Alignment:
Q  4 gtgagaaaaa-attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaaca 101  Q
    |||||||||| |||||||| | || ||| ||||||||||| | |||| ||||||| ||| ||||| ||||||||||||||||| ||||| |||| |||      
T  7426929 gtgagaaaaatattaggtgatggtagtttacaataaaatacagtagaccctacatcatccaacaaacctcttttaaagaaaaaatcaaaaggttgaaatt 7426830  T
Q  102 taaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaa 171  Q
    ||||||||||||||||| || |||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  7426829 taaaaatttaataaggtctatggtggaccacctttaaatatgattcaccttagacatttgatgttaaaaa 7426760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 21387924 - 21387722
Alignment:
Q  4 gtgagaaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacat 102  Q
    |||| |||| |||||||| |||| ||| ||| |||| || |||||| ||||||| ||  |||   ||||||||||||||||| ||||| ||||||||       
T  21387924 gtgaaaaaatattaggtgttagtcgtttacagtaaagtacaatagaccctacataattcaacggtcctcttttaaagaaaaaatcaaatggttaaaatta 21387825  T
Q  103 aaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggca 202  Q
    |||||||||||| ||  || |||| |||||||||||||||| |||||||||||  |||||||||||||||||||||| | ||||||| ||||||||||||    
T  21387824 aaaaatttaatacggcctatggtgaaccacctttaaatatgtttcaccttagagttttgatgttaaaaactaacagacaggaccaaaagaggtaacggca 21387725  T
Q  203 gaa 205  Q
    |||    
T  21387724 gaa 21387722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 2167422 - 2167522
Alignment:
Q  81 aaaaatcaaagggttaaaacataaaa-atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacaga 179  Q
    |||||||||| |||||| | |||||| |||||||||||| || |||| |||| || ||||  ||||||||||||||| ||| | ||||||||||||||||    
T  2167422 aaaaatcaaacggttaata-ataaaagatttaataaggtctatggtggaccatctataaagttggttcaccttagacatttaaggttaaaaactaacaga 2167520  T
Q  180 ga 181  Q
    ||    
T  2167521 ga 2167522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 7345350 - 7345415
Alignment:
Q  134 tttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacg 199  Q
    ||||||||||||||||||||||  ||||||||||||||||| || ||| ||||||| ||| |||||    
T  7345350 tttaaatatggttcaccttagagttttgatgttaaaaactatcatagaggaccaaaagagataacg 7345415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 41905298 - 41905230
Alignment:
Q  167 aaaaactaacagagatgaccaaatgaggtaacggcagaaaacataaggggccagtttaagacattttat 235  Q
    |||||||||| |||| || |||| ||||| |||| |||| ||||||||| |||||||||||||||||||    
T  41905298 aaaaactaacggagaggatcaaaagaggtgacggtagaagacataagggaccagtttaagacattttat 41905230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 4567072 - 4567026
Alignment:
Q  169 aaactaacagagatgaccaaatgaggtaacggcagaaaacataaggg 215  Q
    ||||||||||||||||||||| ||||||||| ||||| |||||||||    
T  4567072 aaactaacagagatgaccaaaagaggtaacgacagaagacataaggg 4567026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 15510258 - 15510304
Alignment:
Q  169 aaactaacagagatgaccaaatgaggtaacggcagaaaacataaggg 215  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||||    
T  15510258 aaactaacagagaggaccaaaagaggtaacggcagaagacataaggg 15510304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 5383125 - 5383051
Alignment:
Q  107 atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagaga 181  Q
    |||||||||||| || |||| ||||||| ||||  || |||||||||||| ||| | ||||||||||||| ||||    
T  5383125 atttaataaggtctatggtggaccacctataaagttgattcaccttagacatttaaggttaaaaactaacggaga 5383051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 40058201 - 40058119
Alignment:
Q  107 atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||||||||||| || |||| || || | ||||  ||||||||||||||| ||| |  |||||||||||| ||||||||||||    
T  40058201 atttaataaggtctatggtggactacttataaagttggttcaccttagacatttaagattaaaaactaacggagatgaccaaa 40058119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 18139320 - 18139548
Alignment:
Q  9 aaaaaattaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaag-ggttaaaacataaaa 106  Q
    ||||||||| |||  | ||||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||||||||| |||||  ||||||||  |||||    
T  18139320 aaaaaattaagtgtcaatggttcacagtaaaatacaatagaccctacatgatccaacaatcctcttttaaagaaaaaatcaaaaaggttaaaatttaaaa 18139419  T
Q  107 atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaa 206  Q
    ||||||||| || || |||| | || ||||||| |||||||||||||||| ||||||||||||||||||  |||| |||||||  |   ||||||||||     
T  18139420 atttaataatgtctatggtggatcatctttaaacatggttcaccttagacatttgatgttaaaaactaatggagaggaccaaaacaataaacggcagaag 18139519  T
Q  207 acataaggggccagtttaagacattttat 235  Q
    | ||||||| ||| ||| ||||| |||||    
T  18139520 atataagggaccaatttgagacactttat 18139548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 33801867 - 33802031
Alignment:
Q  25 gtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa--tcaaagggttaaaacataaaaatttaataaggtttac 122  Q
    |||||| | ||||||| | |||||| ||||||||||| ||||| |||||||||||||||||  ||||| | ||||||  ||||||||||||||||| ||     
T  33801867 gtggtttataataaaaaacaatagaccctacatgatccaacaatcctcttttaaagaaaaaaatcaaaag-ttaaaatttaaaaatttaataaggtatat 33801965  T
Q  123 ggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaa 188  Q
    |||| |||||||| ||  |||||  ||||||||  ||||||||||||||||||| |||| ||||||    
T  33801966 ggtggaccaccttgaatcatggtctaccttagatatttgatgttaaaaactaacggagaggaccaa 33802031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 13507125 - 13507209
Alignment:
Q  128 accacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaaaacataa 212  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | | ||| ||||| ||||| ||||||    
T  13507125 accacctttaaatatggttcaccttaaacatttgatgttaaaaactaacagagatgactagaagagataacgacagaagacataa 13507209  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 14328707 - 14328789
Alignment:
Q  107 atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||||||||||| || |||| ||||||| ||||  ||||||||||||||| ||| | |||||||| |||| |||| |||||||    
T  14328707 atttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaagtaacggagaggaccaaa 14328789  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 14421717 - 14421799
Alignment:
Q  107 atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||||||||||| || |||| ||||||| ||||  ||||||||||||||| ||| | |||||||| |||| |||| |||||||    
T  14421717 atttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaagtaacggagaggaccaaa 14421799  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 293573 - 293655
Alignment:
Q  107 atttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaa 189  Q
    |||||||||||| || |||| ||||||| ||||  ||||||||||||||| ||| | ||||||||  ||| |||| |||||||    
T  293573 atttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaataaacggagaggaccaaa 293655  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 2138632 - 2138678
Alignment:
Q  169 aaactaacagagatgaccaaatgaggtaacggcagaaaacataaggg 215  Q
    ||||||||||||| ||||||| ||||||||| ||||| |||||||||    
T  2138632 aaactaacagagaggaccaaaagaggtaacgacagaagacataaggg 2138678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 13507048 - 13507097
Alignment:
Q  51 cctacatgatcaaacaaccctcttttaaag-aaaaatcaaagggttaaaa 99  Q
    ||||||||||| ||||| | |||||||||| |||||||||||||||||||    
T  13507048 cctacatgatccaacaatcttcttttaaagaaaaaatcaaagggttaaaa 13507097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 27440074 - 27440190
Alignment:
Q  73 ttttaaagaaaaatcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaac 172  Q
    ||||||| ||| |||||| ||||||||   ||||||||||||| ||||| |||  |||||||  |||  |  |||||||||||| ||| | ||||||||     
T  27440074 ttttaaaaaaagatcaaacggttaaaattaaaaaatttaataaagtttatggtagaccacctacaaagttaattcaccttagacatttaaagttaaaaat 27440173  T
Q  173 taacagagatgaccaaa 189  Q
    |||| |||| |||||||    
T  27440174 taacggagaggaccaaa 27440190  T

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Target: scaffold0098 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 41184 - 41017
Alignment:
Q  15 ttaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaat 113  Q
    ||||||| |||||||||||| |||| || |||| ||||||||||||  |||     ||||||||| ||||| ||||| |||||||| | ||||||||| |    
T  41184 ttaggtgttagtggttcacagtaaagtacaataaatcctacatgattcaacggttatcttttaaaaaaaaaatcaaatggttaaaataaaaaaatttagt 41085  T
Q  114 aaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagaga 181  Q
    ||||  || |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41084 aaggcatatggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacagaga 41017  T

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Target: scaffold0051 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 39730 - 39924
Alignment:
Q  5 tgagaaaaa-attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacat 102  Q
    ||||||||| ||||| || |||||||||||| |||| || |||||| ||||||| ||  ||    | ||||||||||||||| ||||| ||||||||       
T  39730 tgagaaaaatattagatgttagtggttcacagtaaagtacaatagaccctacataattcaatggtcatcttttaaagaaaaaatcaaatggttaaaatta 39829  T
Q  103 aaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaa 197  Q
    |||||||||||| |||  | |||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||| |||||||    
T  39830 aaaaatttaatacggtccatggtgaaccacctttaaatatgattcaccttagacttttgatgttaaaaactaacagagaggaccaaaagaggtaa 39924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 207696 - 207839
Alignment:
Q  73 ttttaaagaaaaa-tcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaa 171  Q
    ||||||||||||| ||||| ||||||||   ||||||||| |||||  || |||| |||||||||||| ||||||||||| |||| ||||||||||||||    
T  207696 ttttaaagaaaaaatcaaatggttaaaattaaaaaatttagtaaggcatatggtggaccacctttaaacatggttcacctaagacatttgatgttaaaaa 207795  T
Q  172 ctaacagagatgaccaaatgaggtaacggcagaaaacataaggg 215  Q
    ||||| |||| ||||||| ||| |||||| |||| |||||||||    
T  207796 ctaacggagaggaccaaaagagataacggaagaagacataaggg 207839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 56526 - 56707
Alignment:
Q  4 gtgagaaaaa-attaggtggtagtggttcacaataaaatataatagatc-ctacatgatcaaacaaccctcttttaaagaaaaa--tcaaagggttaaaa 99  Q
    |||||||||| |||||||| | |||||| ||||||||||| |||||| | |||| ||||| ||||| | |||||||||||||||  ||||| ||||||||    
T  56526 gtgagaaaaatattaggtgttggtggtttacaataaaatacaatagaacactacgtgatccaacaatcatcttttaaagaaaaaaatcaaaaggttaaaa 56625  T
Q  100 cataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagaga 181  Q
      ||||||||||||||||| |  |||| |||| ||||||| || |||  |||||||  |||||||||||||||||| |||||    
T  56626 tttaaaaatttaataaggtctttggtggaccatctttaaacatagtttcccttagatatttgatgttaaaaactaatagaga 56707  T

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Target: scaffold1974 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 535 - 643
Alignment:
Q  81 aaaaatcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagag 180  Q
    |||||||||| ||||||||    ||||||||||||| | ||||||| |||| |||||||||||||||||||||||  ||| ||||||||||||||| |||    
T  535 aaaaatcaaatggttaaaattagaaaatttaataagatctacggtgaaccatctttaaatatggttcaccttagattttttatgttaaaaactaacggag 634  T
Q  181 atgaccaaa 189  Q
    |||||||||    
T  635 atgaccaaa 643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 739 - 631
Alignment:
Q  81 aaaaatcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagag 180  Q
    |||||||||| ||||||||    ||||||||||||| | ||||||| |||| |||||||||||||||||||||||  ||| ||||||||||||||| |||    
T  739 aaaaatcaaatggttaaaattagaaaatttaataagatctacggtgaaccatctttaaatatggttcaccttagattttttatgttaaaaactaacggag 640  T
Q  181 atgaccaaa 189  Q
    |||||||||    
T  639 atgaccaaa 631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 9385 - 9493
Alignment:
Q  81 aaaaatcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagag 180  Q
    |||||||||| ||||||||    ||||||||||||| | ||||||| |||| |||||||||||||||||||||||  ||| ||||||||||||||| |||    
T  9385 aaaaatcaaatggttaaaattagaaaatttaataagatctacggtgaaccatctttaaatatggttcaccttagattttttatgttaaaaactaacggag 9484  T
Q  181 atgaccaaa 189  Q
    |||||||||    
T  9485 atgaccaaa 9493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 13043 - 13235
Alignment:
Q  14 attaggtggtagtggttcacaataaaatataatagatcctacatgatcaaacaaccctcttttaaagaaaaa-tcaaagggttaaaacataaaaatttaa 112  Q
    ||||| || |||||||| |||||||| || |||||| ||||||  ||  ||||  ||||||||||||||||| ||||| |||||| |   |||| ||||     
T  13043 attagatgttagtggttgacaataaagtacaatagaccctacaaaattcaacagtcctcttttaaagaaaaaatcaaatggttaagattaaaaattttag 13142  T
Q  113 taaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaa 205  Q
    || ||| || |||| |||| |||||||||||||||||||||||| ||||||||||||| ||||  || | ||||||| |||||||||| ||||    
T  13143 tagggtatatggtggaccatctttaaatatggttcaccttagacatttgatgttaaaacctaatggataggaccaaaagaggtaacggaagaa 13235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 77128 - 77161
Alignment:
Q  123 ggtgtaccacctttaaatatggttcaccttagac 156  Q
    |||| |||||||||||||||||||||||||||||    
T  77128 ggtggaccacctttaaatatggttcaccttagac 77161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 16161 - 16054
Alignment:
Q  74 tttaaagaaaaatcaaagggttaaaacataaaaa-tttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaac 172  Q
    |||||| ||| |||||| |||||||| ||||||  ||||||||||| || |||| |||| || ||||  ||||||| ||||||| ||| | |||||||||    
T  16161 tttaaaaaaatatcaaacggttaaaa-ataaaaggtttaataaggtctatggtggaccatctataaagttggttcatcttagacatttaaggttaaaaac 16063  T
Q  173 taacagaga 181  Q
    |||| ||||    
T  16062 taacggaga 16054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 47287 - 47171
Alignment:
Q  73 ttttaaagaaaaatcaaagggttaaaacataaaaatttaataaggtttacggtgtaccacctttaaatatggttcaccttagacgtttgatgttaaaaac 172  Q
    ||||||| ||| |||||| ||||||||   ||||||||||||| ||||| |||  |||||||  |||  |  |||||||||||| ||| | ||||||||     
T  47287 ttttaaaaaaagatcaaacggttaaaattaaaaaatttaataaagtttatggtagaccacctacaaagttaattcaccttagacatttaaagttaaaaat 47188  T
Q  173 taacagagatgaccaaa 189  Q
    |||| |||| |||||||    
T  47187 taacggagaggaccaaa 47171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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