View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16281_low_5 (Length: 501)
Name: NF16281_low_5
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_low_5 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 176 - 491
Target Start/End: Original strand, 45270801 - 45271113
Alignment:
| Q |
176 |
cttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaat |
275 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270801 |
cttttcaatgtgagttaatgtttttttcaaaaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaat |
45270900 |
T |
|
| Q |
276 |
taaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttggttcttactaccag |
375 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||| ||||| |||| |||||||| | ||||||||||| |||||||||| ||||||| |
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| T |
45270901 |
taaataaaataaaa--gctttgatcgata-taactgaattacgtacaaaaggtggcagtgttctgtgtgttggtaccggccatttggttctttctaccag |
45270997 |
T |
|
| Q |
376 |
tgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagat |
475 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270998 |
tgacaatggtctttgcagggccatcaccatacataagaatgttaacagcctccttggggacagtgatgtattcgtcatagacaccggccttaacgtagat |
45271097 |
T |
|
| Q |
476 |
aacatatctgcctttg |
491 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
45271098 |
aacatatctgtctttg |
45271113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 176 - 491
Target Start/End: Original strand, 45282574 - 45282887
Alignment:
| Q |
176 |
cttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaat |
275 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||||||||||||||||| ||| |||| ||| |||||| |||||||||||||| || | ||||||| |
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|
| T |
45282574 |
cttttcaatgttagtta-tgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataag-taaataattaat |
45282671 |
T |
|
| Q |
276 |
taaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttggttcttactaccag |
375 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| ||||||| ||||| |||| ||| | | | | ||| ||| || | |||| ||||||| |
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| T |
45282672 |
taaataaaataaaaaagttttgatcgatgataattgaattaagtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccag |
45282771 |
T |
|
| Q |
376 |
tgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagat |
475 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282772 |
tgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagat |
45282871 |
T |
|
| Q |
476 |
aacatatctgcctttg |
491 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
45282872 |
aacatatctgcctttg |
45282887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 176 - 491
Target Start/End: Original strand, 45274331 - 45274646
Alignment:
| Q |
176 |
cttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaat |
275 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||| ||||||||||||||||||||| |||| || |||||| |||||| |||||||||| ||||||||| |
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|
| T |
45274331 |
cttttcaatgcgagtta-tgttttcttcaaaaataaattttgagagtgatgctactttttcttatatactctttcttcaatcataaggtatacaattaat |
45274429 |
T |
|
| Q |
276 |
taaataaaataaaaaa-gctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttggttcttactacca |
374 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||||||| |||| ||| | | | | ||||||||||| |||||| ||||| |
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|
| T |
45274430 |
caaataaaataaaaaaagctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccg |
45274529 |
T |
|
| Q |
375 |
gtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtaga |
474 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
45274530 |
gtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgtattcgtcatagacaccagccttaacgtaga |
45274629 |
T |
|
| Q |
475 |
taacatatctgcctttg |
491 |
Q |
| |
|
||| ||| ||||||||| |
|
|
| T |
45274630 |
taaaatacctgcctttg |
45274646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 45293737 - 45293881
Alignment:
| Q |
18 |
atctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
45293737 |
atctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggct |
45293836 |
T |
|
| Q |
118 |
gcatgcatggatgatcaattaattagtaacttcgatcacaccggc |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45293837 |
gcatgcatggatgatcaattaattagtaacttcgatcacaccggc |
45293881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 45302697 - 45302841
Alignment:
| Q |
18 |
atctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
45302697 |
atctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggct |
45302796 |
T |
|
| Q |
118 |
gcatgcatggatgatcaattaattagtaacttcgatcacaccggc |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45302797 |
gcatgcatggatgatcaattaattagtaacttcgatcacaccggc |
45302841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 45282397 - 45282536
Alignment:
| Q |
18 |
atctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282397 |
atctccttggtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggct |
45282496 |
T |
|
| Q |
118 |
gcatgcatggatgatcaattaattagtaacttcgatcaca |
157 |
Q |
| |
|
|||| ||||||| |||||||||||||||| |||||||||| |
|
|
| T |
45282497 |
gcattcatggataatcaattaattagtaatttcgatcaca |
45282536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 45270627 - 45270771
Alignment:
| Q |
18 |
atctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggct |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45270627 |
atctcctatgtttctaaatgccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggct |
45270726 |
T |
|
| Q |
118 |
gcatgcatggatgatcaattaattagtaacttcgatcacaccggc |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
45270727 |
gcatgcatggatgatcaattaattagtaacttctataacaccggc |
45270771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 45274154 - 45274294
Alignment:
| Q |
18 |
atctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggct |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45274154 |
atctcctacgtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgttggct |
45274253 |
T |
|
| Q |
118 |
gcatgcatggatgatcaattaattagtaacttcgatcacac |
158 |
Q |
| |
|
||| |||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
45274254 |
gcacgcatggataatcaattaattagtaatttcgatcacac |
45274294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 176 - 491
Target Start/End: Original strand, 45293959 - 45294275
Alignment:
| Q |
176 |
cttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatc--tactctctcttcattcataaggtacacaatta |
273 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||| ||| || |||||||||||||||||||||||| |
|
|
| T |
45293959 |
cttttcaatgtgagtta-tgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaattt |
45294057 |
T |
|
| Q |
274 |
attaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttggttcttactacc |
373 |
Q |
| |
|
||||||||||||||||||| | |||||||| |||| |||||||| |||| |||| ||| | | | | ||| ||| || |||||| || || |
|
|
| T |
45294058 |
attaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttcc |
45294157 |
T |
|
| Q |
374 |
agtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtag |
473 |
Q |
| |
|
|| |||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || |||||||||||| |
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|
| T |
45294158 |
ggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtag |
45294257 |
T |
|
| Q |
474 |
ataacatatctgcctttg |
491 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
45294258 |
atagtatatctgcctttg |
45294275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 176 - 491
Target Start/End: Original strand, 45302919 - 45303235
Alignment:
| Q |
176 |
cttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatc--tactctctcttcattcataaggtacacaatta |
273 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||| ||| || |||||||||||||||||||||||| |
|
|
| T |
45302919 |
cttttcaatgtgagtta-tgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaattt |
45303017 |
T |
|
| Q |
274 |
attaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttggttcttactacc |
373 |
Q |
| |
|
||||||||||||||||||| | |||||||| |||| |||||||| |||| |||| ||| | | | | ||| ||| || |||||| || || |
|
|
| T |
45303018 |
attaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttcc |
45303117 |
T |
|
| Q |
374 |
agtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtag |
473 |
Q |
| |
|
|| |||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || |||||||||||| |
|
|
| T |
45303118 |
ggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtag |
45303217 |
T |
|
| Q |
474 |
ataacatatctgcctttg |
491 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
45303218 |
atagtatatctgcctttg |
45303235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 489
Target Start/End: Original strand, 38583244 - 38583289
Alignment:
| Q |
444 |
tattcgtcatagacaccggccttaacgtagataacatatctgcctt |
489 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
38583244 |
tattcgtcatagacaccagccttgacgtagatgacatatctacctt |
38583289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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