View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_low_50 (Length: 230)
Name: NF16281_low_50
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2772743 - 2772534
Alignment:
| Q |
1 |
ctatgtttctccatttcttctctcaaaaactcaagtttttcctgatccacaacacatgtattccctatacaaatcaccaaaccaaaataaacaaaataga |
100 |
Q |
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| T |
2772743 |
ctatgtttctccatttcttctctcaaaaactcaagtttttcctgatccacaacacgagtattccatatacaaatcaccaaaccaaaata---------ga |
2772653 |
T |
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| Q |
101 |
aacaatgaaactcacgtgttgaatttgaagattcataattaataacaccctcctaaatgaaatataagcaaaaagatagtaataatatagatgtacttgg |
200 |
Q |
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| T |
2772652 |
aacaatgaaactcacgtgttgaatttgaagattcataattaataacaccctcctaaatgaaatataagcaaaaggatagtaataatatagatgtacttgg |
2772553 |
T |
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| Q |
201 |
acacattgaattttgatga |
219 |
Q |
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|||||||||||||| |||| |
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| T |
2772552 |
acacattgaatttttatga |
2772534 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33481622 - 33481688
Alignment:
| Q |
1 |
ctatgtttctccatttcttctctcaaaaactcaagtttttcctgatccacaacacatgtattcccta |
67 |
Q |
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||||| ||| ||||||||||||| ||||||||||| | || ||||| |||||||| |||||||||| |
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| T |
33481622 |
ctatgcttcgccatttcttctctgaaaaactcaagctctttctgattcacaacacgagtattcccta |
33481688 |
T |
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