View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16281_low_51 (Length: 229)
Name: NF16281_low_51
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 42207280 - 42207087
Alignment:
| Q |
20 |
gaggcttagaggactataaggattctcagatatcattgaacctgaaagccattcagagtcttcctcttcaagacttagtaaagaattcgagtaacttgct |
119 |
Q |
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| T |
42207280 |
gaggcttagaggactataaggattctcagatatcattgaacctgaaagccattcagagtcttcctcttcaagacttagtaaagaattcgagtaacttgct |
42207181 |
T |
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| Q |
120 |
ttgtccaaaatccaatcactgtcttcctctttaagttttagcaaggagtcccggtaacttggtgtgcctatgtctgagatctcactaaaagaat |
213 |
Q |
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| T |
42207180 |
ttgtccaaaatccaatcactgtcttcctctttaagttttagcaagtagtcccggtaacttggtgtgcctatgtctgagatctcactaaaagaat |
42207087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 42214107 - 42213928
Alignment:
| Q |
23 |
gcttagaggactataaggattctcagatatcattgaacctgaaagccattcagagtcttcctcttcaagacttagtaaagaattcgagtaacttgctttg |
122 |
Q |
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| T |
42214107 |
gcttagaggactagaaggattctcagataccattgaatctgaaagccattcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttgcttta |
42214008 |
T |
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| Q |
123 |
tccaaaatccaatcactgtcttcctctttaagttttagcaaggagtcccggtaacttggtgtgcctatgtctgagatctc |
202 |
Q |
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| T |
42214007 |
tccaaaatccaatcactgtcttcctcttcaaatttgagcaaggagttccaataacttggtgtacccacatctgagatctc |
42213928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 42214308 - 42214130
Alignment:
| Q |
23 |
gcttagaggactataaggattctcagatatcattgaacctgaaagccattcagagtcttcctcttcaagacttagtaaagaattcgagtaacttgctttg |
122 |
Q |
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| T |
42214308 |
gcttagaggactggaagggtcctcagagatcattgaatctgagagccatgcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttgctttg |
42214209 |
T |
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| Q |
123 |
tccaaaatccaatcactgtcttcctctttaagttttagcaaggagtcccggtaacttggtgtgcctatgtctgagatct |
201 |
Q |
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| T |
42214208 |
tccaaaatccacacattgtcttcctcttcaagtttgagcaaggagtcccagtaacttggcaagcctacgtctgagatct |
42214130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 51 - 201
Target Start/End: Complemental strand, 42207447 - 42207300
Alignment:
| Q |
51 |
atcattgaacctgaaagccattcagagtcttcctcttcaagacttagtaaagaattcgagtaacttgctttgtccaaaatccaatcactgtcttcctctt |
150 |
Q |
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| T |
42207447 |
atcattgaatctgagagccatgcagagtcttcctcttcaagacttagtaaagaatgcgtataacttgctctgtccaaaatccacacattgtcttcgtc-- |
42207350 |
T |
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| Q |
151 |
taagttttagcaaggagtcccggtaacttggtgtgcctatgtctgagatct |
201 |
Q |
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|||||| | |||||| |||| ||||||||| ||||||||| ||||||| |
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| T |
42207349 |
-aagtttgatcaaggactcccagtaacttggcaagcctatgtccgagatct |
42207300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 42213906 - 42213826
Alignment:
| Q |
23 |
gcttagaggactataaggattctcagatatcattgaacctgaaagccattcagagtcttcctcttcaagacttagtaaaga |
103 |
Q |
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|||||||||| | |||| |||||||||||||||||| |||| |||||| || ||||||||| ||||||||||| ||||| |
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| T |
42213906 |
gcttagaggagttgaagggttctcagatatcattgaatctgagagccatccattgtcttcctcgtcaagacttagcaaaga |
42213826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 42214405 - 42214333
Alignment:
| Q |
127 |
aaatccaatcactgtcttcctctttaagttttagcaaggagtcccggtaacttggtgtgcctatgtctgagat |
199 |
Q |
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||||||| ||| ||||||||| || |||| | ||||||||||||| |||||| |||||||||| |||||||| |
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| T |
42214405 |
aaatccactcattgtcttccttttcaagtctgagcaaggagtcccagtaactaggtgtgcctacatctgagat |
42214333 |
T |
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