View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16281_low_52 (Length: 220)
Name: NF16281_low_52
Description: NF16281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16281_low_52 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 33919738 - 33919920
Alignment:
| Q |
21 |
tttcctcaatgaacaatgttcctggatctttagaagagcacatgattatacaaaggtcgagtcttctatcgattggagagtcgtgctcccgaatgaggat |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33919738 |
tttcctcaatgaacaatgttt-tggatctttagaagagcacatgattatacaaaggtcgagtcttctatcgattggagagtcatgctcccgaatgaggat |
33919836 |
T |
|
| Q |
121 |
gctcaagttcaacacttccacatcccagactctttataaccttctttatgacatcctcttcccatttgagatccactggttctt |
204 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33919837 |
gctcaagttcaacacttccacatctcagactctttataaccttctttatgacatcctcttcccatttgagatccaccggttctt |
33919920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 33920230 - 33920412
Alignment:
| Q |
21 |
tttcctcaatgaacaatgttcctggatctttagaagagcacatgattatacaaaggtcgagtcttctatcgattggagagtcgtgctcccgaatgaggat |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33920230 |
tttcctcaatgaacaatgttt-tggatctttagaagagcacatgattatacaaaggtcgagtcttctatcgattggagagtcatgctcccgaatgaggat |
33920328 |
T |
|
| Q |
121 |
gctcaagttcaacacttccacatcccagactctttataaccttctttatgacatcctcttcccatttgagatccactggttctt |
204 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33920329 |
gctcaagttcaacacttccacatctcagactctttataaccttctttatgacatcctcttcccatttgagatccaccggttctt |
33920412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University