View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16282_high_1 (Length: 653)

Name: NF16282_high_1
Description: NF16282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16282_high_1
NF16282_high_1
[»] chr6 (20 HSPs)
chr6 (105-622)||(31564316-31564843)
chr6 (4-326)||(33385359-33385670)
chr6 (4-326)||(33259628-33259959)
chr6 (363-518)||(33416366-33416527)
chr6 (4-152)||(33416197-33416345)
chr6 (4-145)||(24631975-24632116)
chr6 (4-186)||(9165228-9165418)
chr6 (484-613)||(33385707-33385837)
chr6 (197-303)||(24631864-24631970)
chr6 (115-189)||(29274300-29274376)
chr6 (539-598)||(33281320-33281376)
chr6 (556-610)||(33416538-33416592)
chr6 (539-598)||(33301947-33302003)
chr6 (220-295)||(281808-281881)
chr6 (481-560)||(33282310-33282389)
chr6 (5-46)||(33282241-33282282)
chr6 (5-46)||(33398042-33398083)
chr6 (5-46)||(33408952-33408993)
chr6 (128-203)||(2034496-2034572)
chr6 (2-46)||(31564838-31564882)
[»] chr5 (8 HSPs)
chr5 (364-518)||(30653203-30653360)
chr5 (115-237)||(11684346-11684468)
chr5 (191-256)||(30653373-30653438)
chr5 (108-189)||(32059660-32059742)
chr5 (108-152)||(10391269-10391313)
chr5 (245-296)||(11457158-11457209)
chr5 (108-147)||(29115328-29115367)
chr5 (116-152)||(19113227-19113263)
[»] scaffold0428 (5 HSPs)
scaffold0428 (90-326)||(3802-4047)
scaffold0428 (539-598)||(12876-12932)
scaffold0428 (481-560)||(11863-11942)
scaffold0428 (5-46)||(11970-12011)
scaffold0428 (484-560)||(4084-4160)
[»] chr2 (8 HSPs)
chr2 (481-610)||(17443374-17443503)
chr2 (261-326)||(17443537-17443602)
chr2 (108-189)||(34339039-34339122)
chr2 (116-156)||(3102617-3102657)
chr2 (221-298)||(14299588-14299663)
chr2 (128-189)||(7103554-7103615)
chr2 (128-189)||(18962109-18962172)
chr2 (280-332)||(43199930-43199982)
[»] chr8 (10 HSPs)
chr8 (220-298)||(13000381-13000457)
chr8 (113-181)||(26717178-26717246)
chr8 (117-203)||(5290566-5290649)
chr8 (108-171)||(26716527-26716590)
chr8 (220-298)||(30191098-30191174)
chr8 (155-241)||(10079082-10079168)
chr8 (192-241)||(30389108-30389157)
chr8 (115-189)||(34788498-34788574)
chr8 (116-152)||(6918955-6918991)
chr8 (119-186)||(8536123-8536191)
[»] chr3 (8 HSPs)
chr3 (220-296)||(43115093-43115167)
chr3 (108-186)||(38462197-38462277)
chr3 (115-188)||(22232749-22232824)
chr3 (99-181)||(3015928-3016011)
chr3 (220-298)||(37273171-37273247)
chr3 (223-319)||(24624250-24624344)
chr3 (116-152)||(16790466-16790502)
chr3 (116-181)||(51278236-51278303)
[»] chr7 (10 HSPs)
chr7 (183-296)||(3468614-3468725)
chr7 (108-189)||(3610811-3610894)
chr7 (116-237)||(26935573-26935696)
chr7 (74-152)||(22388014-22388093)
chr7 (116-181)||(7244626-7244693)
chr7 (108-152)||(23721417-23721461)
chr7 (128-189)||(33894559-33894621)
chr7 (115-188)||(35536030-35536105)
chr7 (220-295)||(39345508-39345581)
chr7 (116-152)||(45078217-45078253)
[»] chr1 (7 HSPs)
chr1 (118-171)||(44207697-44207750)
chr1 (247-298)||(15581316-15581367)
chr1 (108-164)||(11639512-11639568)
chr1 (223-298)||(28837002-28837075)
chr1 (192-236)||(30014095-30014139)
chr1 (133-189)||(44422642-44422698)
chr1 (115-147)||(50764489-50764521)
[»] scaffold0024 (1 HSPs)
scaffold0024 (130-203)||(21335-21410)
[»] chr4 (4 HSPs)
chr4 (117-171)||(32920489-32920543)
chr4 (114-181)||(47970240-47970309)
chr4 (131-201)||(55437345-55437415)
chr4 (221-296)||(9843212-9843285)
[»] scaffold0311 (1 HSPs)
scaffold0311 (220-295)||(10577-10650)


Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 105 - 622
Target Start/End: Complemental strand, 31564843 - 31564316
Alignment:
Q  105 aagataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagctt 204  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  31564843 aagataaacacttatcataaaattgcatatgtataagctatttttataacaagataaaatgaagtcacactgttttcctacaagtgattttcataagctt 31564744  T
Q  205 ttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 304  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31564743 ttctagacaacatatggaaataagctgaaaacaacttttgtggacatgtcattagttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 31564644  T
Q  305 actgtataagttcaaatacatcaatccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctctttt------acat 398  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||      ||||    
T  31564643 agtgtataagttcaaatatatcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacatttacat 31564544  T
Q  399 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaac----agcaaataagatga 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  31564543 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaacattaagcaaataagatga 31564444  T
Q  495 aattgaaaccattactcgagcctttgtctaaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 594  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564443 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 31564344  T
Q  595 ttcatcttcaacttgtactaccacaggt 622  Q
    ||||||||||||||||||||||||||||    
T  31564343 ttcatcttcaacttgtactaccacaggt 31564316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 4 - 326
Target Start/End: Original strand, 33385359 - 33385670
Alignment:
Q  4 agacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggctagaaaactaagacttagtttggataaataacctaattaaagctta 103  Q
    ||||||||||  |||| ||| |||||||||||||||||||||||||||||||||| |||| ||||||           |||| | |||||| ||| ||||    
T  33385359 agacatttaacgattagaaatcttatgtaagaattcaaagataggtgaacaggctggaaacctaaga-----------taaacagcctaatgaaaactta 33385447  T
Q  104 caagataaacacttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataagcgattttcataag 201  Q
     ||||||| |||||  |||| || |||| |||||||||| ||||||||| |||  |||||||||||||||||||  | | |||||||| |||||||||||    
T  33385448 taagataagcactttacatataagtgctgatgtataagcaatttttataacaaaagataaaatgaagtcatact--tatgctataagctattttcataag 33385545  T
Q  202 cttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaat 301  Q
    ||||||||||||   || ||||| |||||||||||||||||| ||||||||||||  | ||||||||| |||||||| ||||||| ||||||||||| ||    
T  33385546 cttttctagacagtttatggaaaaaagctgaaaacaacttttatggacatgtcatgagctgtttccataaactcttccaaacagtttcacaagtgcttat 33385645  T
Q  302 atgactgtataagttcaaatacatc 326  Q
    || | |  |||||||||||| ||||    
T  33385646 atcagtagataagttcaaatgcatc 33385670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 4 - 326
Target Start/End: Original strand, 33259628 - 33259959
Alignment:
Q  4 agacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggctagaaaactaagacttagtttggataaataacctaattaaagctta 103  Q
    |||||||||| || || ||| |||||||||||||||||||||| || |  ||||| |||| ||||||| | ||||||||||| | ||||||| |||||||    
T  33259628 agacatttaacaactataaatcttatgtaagaattcaaagatatgtaagaaggctggaaacctaagaccttgtttggataaacagcctaattcaagctta 33259727  T
Q  104 caagataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc-------ctataagcgattt 194  Q
     |||||||   |||  |||| || ||||||||||||||||||||||||| |  |||||||| ||||||||||||||||||       |||||||| ||||    
T  33259728 taagataagagctttacatataagtgcttatgtataagctatttttataacaaaagataaattgaagtcatactgttttcctatatgctataagctattt 33259827  T
Q  195 tcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaag 294  Q
    ||||||||||||||| |||  ||| | |||   |||||||||| ||||| ||||||||||||| |  |||||||| |||||||| ||||||| |  ||||    
T  33259828 tcataagcttttctatacagtatatgtaaaatggctgaaaacagcttttatggacatgtcattagccgtttccataaactcttccaaacagtttggcaag 33259927  T
Q  295 tgctaatatgactgtataagttcaaatacatc 326  Q
    |||| |||| | | ||||||||||||||||||    
T  33259928 tgcttatatcaatatataagttcaaatacatc 33259959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 363 - 518
Target Start/End: Original strand, 33416366 - 33416527
Alignment:
Q  363 aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt 460  Q
    |||||||||||||| |  || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  33416366 aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat 33416465  T
Q  461 agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctt 518  Q
    |||||||| ||||| ||||     ||||||||||||||||| |||||| |||||||||||||    
T  33416466 agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagcctt 33416527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 33416197 - 33416345
Alignment:
Q  4 agacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggctagaaaactaagacttagtttggataaataacctaattaaagctta 103  Q
    |||||||||| ||||| ||  ||||  ||| ||||||||||||||||||||| ||||||||| | ||| | ||||||||||| |||||||||||||||||    
T  33416197 agacatttaacaattagaagtcttaactaaaaattcaaagataggtgaacagactagaaaaccatgaccttgtttggataaacaacctaattaaagctta 33416296  T
Q  104 caagataaacacttatcataaaattgcttatgtataagctatttttata 152  Q
     ||||||| | || || || ||| |||||||||||||||||||||||||    
T  33416297 taagataagcgctcattatcaaagtgcttatgtataagctatttttata 33416345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 24632116 - 24631975
Alignment:
Q  4 agacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggctagaaaactaagacttagtttggataaataacctaattaaagctta 103  Q
    |||||||||| ||||| ||| |||||||| |||||||||||| |||||||| | | |||||||||||| | ||||||||||  ||| ||||||||  |||    
T  24632116 agacatttaacaattagaaatcttatgtaggaattcaaagattggtgaacaagttggaaaactaagacctcgtttggataagcaacttaattaaatatta 24632017  T
Q  104 caagataaacacttatcataaaattgcttatgtataagctat 145  Q
     ||||||||| ||||||||| || |||||||| |||||||||    
T  24632016 taagataaacgcttatcatataagtgcttatgcataagctat 24631975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 9165228 - 9165418
Alignment:
Q  4 agacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggctagaaaactaagactta-------gtttggataaataacctaatta 96  Q
    |||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||  ||| ||| ||  ||       |||||||||||   ||||||||    
T  9165228 agacatttaacaattagaaatcttatgtaaaaattcaaagataggtgaacaggctgcaaacctatgagctatgaccttgtttggataaacgccctaatta 9165327  T
Q  97 aagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaaga--taaaatgaagtcatactgttttcctata 186  Q
    ||||||| |||||||   |||| |||| || | ||||||||||||||||||||||| ||| |  ||| ||||||||||||||||||||||||    
T  9165328 aagcttataagataagtgctta-catataagtacttatgtataagctatttttataacaaaaggtaagatgaagtcatactgttttcctata 9165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 484 - 613
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
Q  484 aaataagatgaaattgaaaccattactcgagcctttgtctaaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc 582  Q
    |||||||||||||||| |||| || ||| ||||||  ||| | |  ||||| ||||||||||||||||| ||||||| | ||||||||| | |   ||||    
T  33385707 aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc 33385806  T
Q  583 aattgcaacttcttcatcttcaacttgtact 613  Q
    |||||||||||||||| ||||||||||||||    
T  33385807 aattgcaacttcttcaccttcaacttgtact 33385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 197 - 303
Target Start/End: Complemental strand, 24631970 - 24631864
Alignment:
Q  197 ataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 296  Q
    ||||||||||||| ||| | |  ||||||||||| |||||| ||||| ||||||| ||||  ||||||||||| |||||||| ||| ||| |||||||||    
T  24631970 ataagcttttctaaacagcttttggaaataagctaaaaacagcttttatggacatatcatgagttgtttccataaactcttccaaatagtttcacaagtg 24631871  T
Q  297 ctaatat 303  Q
    || ||||    
T  24631870 cttatat 24631864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 29274376 - 29274300
Alignment:
Q  115 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 189  Q
    ||||||||| || |||||||||||||||||||| ||||||  |||||||||| |||||| | ||||||| |||||||    
T  29274376 cttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagc 29274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 539 - 598
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
Q  539 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 598  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  33281320 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 33281376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 556 - 610
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
Q  556 agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt 610  Q
    |||||||||| ||||||| || ||||||||||||||  |||||||||||||||||    
T  33416538 agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt 33416592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 539 - 598
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
Q  539 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 598  Q
    ||||||||||||||||||||||   || ||||||||||||||||||| ||||| ||||||    
T  33301947 gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca 33302003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 281881 - 281808
Alignment:
Q  220 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 295  Q
    |||||||||||||||||||||| |   ||||||||||  |||| |||||||| |||| | ||||||||||||||||    
T  281881 ggaaataagctgaaaacaacttata--gacatgtcataagttgcttccattagctctcccaaacagtctcacaagt 281808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 560
Target Start/End: Original strand, 33282310 - 33282389
Alignment:
Q  481 agcaaataagatgaaattgaaaccattactcgagcctttgtctaaagaagtaatgccggtttgtccattagaattagata 560  Q
    ||||||||||||||||||| |||| || |||  |||||  |||||||  |||||||| ||||||| |||||| |||||||    
T  33282310 agcaaataagatgaaattgcaacctttgctcaggccttcatctaaagttgtaatgccagtttgtctattagagttagata 33282389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 33282241 - 33282282
Alignment:
Q  5 gacatttaaaaattacaaaccttatgtaagaattcaaagata 46  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33282241 gacatttaaaaattagaaatcttatgtaagaattcaacgata 33282282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 33398042 - 33398083
Alignment:
Q  5 gacatttaaaaattacaaaccttatgtaagaattcaaagata 46  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33398042 gacatttaaaaattataaatcttatgtaagaattcaacgata 33398083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 33408952 - 33408993
Alignment:
Q  5 gacatttaaaaattacaaaccttatgtaagaattcaaagata 46  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33408952 gacatttaaaaattataaatcttatgtaagaattcaacgata 33408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 2034572 - 2034496
Alignment:
Q  128 tgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttcctataagcgattttcataagct 203  Q
    |||||||||||||||| |||||| | ||| |||||||| |||||| |||  |||| |||||||  ||||||||||||    
T  2034572 tgcttatgtataagctgtttttacaacaaagataaaataaagtcaaactactttcatataagcttttttcataagct 2034496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 31564882 - 31564838
Alignment:
Q  2 atagacatttaaaaattacaaaccttatgtaagaattcaaagata 46  Q
    ||||||||||||||| || ||| |||||||||||||| |||||||    
T  31564882 atagacatttaaaaaatagaaatcttatgtaagaatttaaagata 31564838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 4e-43; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 364 - 518
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
Q  364 aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga 463  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| ||    
T  30653360 aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga 30653262  T
Q  464 aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt 518  Q
    ||||||||||||||||||    |||||||||||||||||  |||| |||||||||||||    
T  30653261 aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt 30653203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 11684346 - 11684468
Alignment:
Q  115 cttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaa 214  Q
    ||||||||| || |||| |||||||||||||||||||| ||| ||| ||   ||| | ||||||||| ||||||| ||||||||||||| | || || |     
T  11684346 cttatcatataagtgctaatgtataagctatttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctatgctggagag 11684445  T
Q  215 catacggaaataagctgaaaaca 237  Q
    | |||||||||||| ||||||||    
T  11684446 cttacggaaataagttgaaaaca 11684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 30653438 - 30653373
Alignment:
Q  191 attttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 256  Q
    ||||||||||||||||||||||| | || |||||||||||||||||| ||||| || |||||||||    
T  30653438 attttcataagcttttctagacagcttatggaaataagctgaaaacagcttttatgaacatgtcat 30653373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 32059742 - 32059660
Alignment:
Q  108 ataaacacttatcataaaattgcttatgtataagctatttttatagc-aagataaaatgaagtcatactgttttcctataagc 189  Q
    ||||| |||||||||| || |||||||||||||||| ||||| || | |||||||||| |||||| ||||||||| |||||||    
T  32059742 ataaatacttatcatataagtgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagc 32059660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 10391269 - 10391313
Alignment:
Q  108 ataaacacttatcataaaattgcttatgtataagctatttttata 152  Q
    |||||||||||||||| || |||||| ||||||||||||||||||    
T  10391269 ataaacacttatcatataagtgcttacgtataagctatttttata 10391313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 11457158 - 11457209
Alignment:
Q  245 tggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 296  Q
    ||||||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  11457158 tggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtg 11457209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 29115367 - 29115328
Alignment:
Q  108 ataaacacttatcataaaattgcttatgtataagctattt 147  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  29115367 ataaacatttatcataaaagtgcttatgtataagctattt 29115328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 19113263 - 19113227
Alignment:
Q  116 ttatcataaaattgcttatgtataagctatttttata 152  Q
    |||||||| |||||||||||||||| |||||||||||    
T  19113263 ttatcatataattgcttatgtataaactatttttata 19113227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 85; Significance: 4e-40; HSPs: 5)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 90 - 326
Target Start/End: Original strand, 3802 - 4047
Alignment:
Q  90 ctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctata- 186  Q
    |||||| ||||||| ||||||| | |||  |||| || ||||||||| ||||||||||||||| |||  |||||| |||||||||||||||||||||||     
T  3802 ctaattcaagcttataagataagcgctttacatataagtgcttatgtgtaagctatttttataacaaaagataaactgaagtcatactgttttcctatat 3901  T
Q  187 ------agcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcga 280  Q
          ||| |||||||||||||||||||||||  ||| | |||   |||||||||| ||||| ||||||||||||  |  |||||||| |||||||| |    
T  3902 gctataagctattttcataagcttttctagacagtatatgtaaaatggctgaaaacagcttttatggacatgtcatgagccgtttccataaactcttcca 4001  T
Q  281 aacagtctcacaagtgctaatatgactgtataagttcaaatacatc 326  Q
    |||||||||||||||||| |||| | | ||||||||||||||||||    
T  4002 aacagtctcacaagtgcttatatcaatatataagttcaaatacatc 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 539 - 598
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
Q  539 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 598  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  12932 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 12876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 560
Target Start/End: Complemental strand, 11942 - 11863
Alignment:
Q  481 agcaaataagatgaaattgaaaccattactcgagcctttgtctaaagaagtaatgccggtttgtccattagaattagata 560  Q
    ||||||||||||||||||| |||| || |||  |||||  |||||||  |||||||| ||||||| |||||| |||||||    
T  11942 agcaaataagatgaaattgcaacctttgctcaggccttcatctaaagttgtaatgccagtttgtctattagagttagata 11863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 12011 - 11970
Alignment:
Q  5 gacatttaaaaattacaaaccttatgtaagaattcaaagata 46  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  12011 gacatttaaaaattagaaatcttatgtaagaattcaacgata 11970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 560
Target Start/End: Original strand, 4084 - 4160
Alignment:
Q  484 aaataagatgaaattgaaaccattactcgagcctttgtctaaagaagtaatgccggtttgtccattagaattagata 560  Q
    |||||||||||||||| |||| || |||  |||||  |||||||  |||||||| ||||||| |||||| |||||||    
T  4084 aaataagatgaaattgtaacctttgctcaggccttcatctaaagttgtaatgccagtttgtctattagagttagata 4160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 481 - 610
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
Q  481 agcaaataagatgaaattgaaaccattactcgagcctttgtctaaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat 580  Q
    ||||||||||||||||||| |||| ||  || ||||||  ||| |||  ||||||| ||||||||||||||| ||||||| |   |||||||| ||  ||    
T  17443503 agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat 17443404  T
Q  581 gcaattgcaacttcttcatcttcaacttgt 610  Q
    ||||||||||||||||||  ||||||||||    
T  17443403 gcaattgcaacttcttcacgttcaacttgt 17443374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 17443602 - 17443537
Alignment:
Q  261 tgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 326  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaatacatc 17443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 34339039 - 34339122
Alignment:
Q  108 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 189  Q
    |||||||||||||||| || ||||||||||||| || ||| ||||||  |||||||||| |||||| ||||||||| |||||||    
T  34339039 ataaacacttatcatataagtgcttatgtataaactttttctatagctaaagataaaataaagtcagactgttttcgtataagc 34339122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 3102617 - 3102657
Alignment:
Q  116 ttatcataaaattgcttatgtataagctatttttatagcaa 156  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  3102617 ttatcatataactgcttatgtataagctatttttatagcaa 3102657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 14299663 - 14299588
Alignment:
Q  221 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 298  Q
    ||||||||||||||||||  | | |||| |||||||  ||||||||||| |||||||| |||||||| | ||||||||    
T  14299663 gaaataagctgaaaacaa--tgtatggatatgtcataagttgtttccataaactcttccaaacagtccctcaagtgct 14299588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 7103615 - 7103554
Alignment:
Q  128 tgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 189  Q
    |||||||||| || |||| |||||| ||||||||||| |||||| ||||||||  |||||||    
T  7103615 tgcttatgtagaaactatatttataacaagataaaataaagtcaaactgttttaatataagc 7103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 18962172 - 18962109
Alignment:
Q  128 tgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 189  Q
    ||||||||||| ||||||||||||| |  |||||||||| |||| | ||||||||| |||||||    
T  18962172 tgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagc 18962109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 43199930 - 43199982
Alignment:
Q  280 aaacagtctcacaagtgctaatatgactgtataagttcaaatacatcaatcca 332  Q
    ||||||||||||||||||| |||||| |  ||||||||||||| || ||||||    
T  43199930 aaacagtctcacaagtgcttatatgagtagataagttcaaataaatgaatcca 43199982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 13000457 - 13000381
Alignment:
Q  220 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 298  Q
    ||||||||||||||||||||||  |||||||||||||  |||||| |||| |||||||  ||| |||||||||||||||    
T  13000457 ggaaataagctgaaaacaactt--gtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgct 13000381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 26717178 - 26717246
Alignment:
Q  113 cacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttc 181  Q
    ||||||||||| || ||||| || |||||||| ||||||| ||||||||||| |||||| ||| |||||    
T  26717178 cacttatcatataagtgcttctgaataagctaattttataacaagataaaataaagtcaaactattttc 26717246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 5290566 - 5290649
Alignment:
Q  117 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagct 203  Q
    ||||||| || |||||||||||||||||||| |||| ||| |||||||  ||||| ||||||||| | ||||| || ||||||||||    
T  5290566 tatcatacaagtgcttatgtataagctatttctataacaa-ataaaat--agtcaaactgttttcatgtaagctatattcataagct 5290649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 26716590 - 26716527
Alignment:
Q  108 ataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 171  Q
    |||||||||||| ||| || ||||||||||||||||| || |||| |||||| |||| ||||||    
T  26716590 ataaacacttattatataagtgcttatgtataagctacttctataacaagattaaataaagtca 26716527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 30191174 - 30191098
Alignment:
Q  220 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 298  Q
    ||||||||||||||||||| |||||   |||||||||  ||||||||||| | |||| | ||||||||| |||||||||    
T  30191174 ggaaataagctgaaaacaagttttga--acatgtcataagttgtttccataagctctcccaaacagtctaacaagtgct 30191098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 10079168 - 10079082
Alignment:
Q  155 aagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaactt 241  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||| |||| |||| || |   || ||||| ||||| ||||||||||    
T  10079168 aagataaaatgaagtcaaactgttttcgtataagctgttttcatgagctattctggaaagtttatggaaagaagcttaaaacaactt 10079082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 30389108 - 30389157
Alignment:
Q  192 ttttcataagcttttctagacaacatacggaaataagctgaaaacaactt 241  Q
    |||||||||||||| ||||| ||| || | ||||||||||||||||||||    
T  30389108 ttttcataagctttcctagagaacttatgaaaataagctgaaaacaactt 30389157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 34788574 - 34788498
Alignment:
Q  115 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 189  Q
    ||||||||| || |||||| |||||||||||||||||  |  |||||||||| |||||| ||||||| | |||||||    
T  34788574 cttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagc 34788498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 6918955 - 6918991
Alignment:
Q  116 ttatcataaaattgcttatgtataagctatttttata 152  Q
    |||||||| || |||||||||||||||||||||||||    
T  6918955 ttatcatataagtgcttatgtataagctatttttata 6918991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 8536191 - 8536123
Alignment:
Q  119 tcataaaattgcttatgtataagctatttttatagcaagataaaa-tgaagtcatactgttttcctata 186  Q
    ||||| || |||||||||||||||||||| |||| ||| |||||| |||||||| | ||||||| ||||    
T  8536191 tcatataagtgcttatgtataagctatttctataacaaaataaaagtgaagtcaaattgttttcatata 8536123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 43115093 - 43115167
Alignment:
Q  220 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 296  Q
    ||||||||||||||||||| || ||  ||||||||||  ||||||||||| |||||||| ||||| |||||||||||    
T  43115093 ggaaataagctgaaaacaagttatg--gacatgtcataagttgtttccataaactcttccaaacaatctcacaagtg 43115167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 38462197 - 38462277
Alignment:
Q  108 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctata 186  Q
    |||||||||||||||| || || |||| |||||||||||| |||| |  |||||||||| |||||| ||||||||| ||||    
T  38462197 ataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 22232749 - 22232824
Alignment:
Q  115 cttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataag 188  Q
    ||||||||| || |||| ||||||||||||||| |||| |||  |||||||| |||||| ||||||||| ||||||    
T  22232749 cttatcatataaatgctcatgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 3016011 - 3015928
Alignment:
Q  99 gcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttc 181  Q
    ||||| || |||||||||||| ||| || ||||||||||| |  ||||| |||| ||| ||||||||||||||| |||||||||    
T  3016011 gcttataacataaacacttattatataagtgcttatgtattaattatttctataacaaagataaaatgaagtcaaactgttttc 3015928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 298
Target Start/End: Original strand, 37273171 - 37273247
Alignment:
Q  220 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 298  Q
    ||||||||| |||||||||||| ||  ||||||||||  ||||||||||| | |||| | |||||||||||| ||||||    
T  37273171 ggaaataagttgaaaacaacttatg--gacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgct 37273247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 319
Target Start/End: Original strand, 24624250 - 24624344
Alignment:
Q  223 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaa 319  Q
    |||||||||||||||   ||| ||||||||||||  | ||||| ||| | |||||| ||||||||| |||||||||||| ||| |  ||||||||||    
T  24624250 aataagctgaaaacag--tttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaa 24624344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 16790502 - 16790466
Alignment:
Q  116 ttatcataaaattgcttatgtataagctatttttata 152  Q
    |||||||| || |||||||||||||||||||||||||    
T  16790502 ttatcatataagtgcttatgtataagctatttttata 16790466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 51278303 - 51278236
Alignment:
Q  116 ttatcataaaattgcttatgtataagctatttttatagcaagata--aaatgaagtcatactgttttc 181  Q
    |||||||| ||||||| ||||||||||||||| |||| ||| |||  |||| |||||| |||||||||    
T  51278303 ttatcatataattgctaatgtataagctatttctataacaaaatattaaataaagtcaaactgttttc 51278236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 296
Target Start/End: Original strand, 3468614 - 3468725
Alignment:
Q  183 tataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaa 282  Q
    |||||||  ||||||||| || | ||||| ||| |  ||||||||| || ||||||||| ||  ||||||||||| ||||||||||  |||||| |||||    
T  3468614 tataagcttttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatg--gacatgtcattagttgtttccaacaactctccgaaa 3468711  T
Q  283 cagtctcacaagtg 296  Q
    |||||||| |||||    
T  3468712 cagtctcaaaagtg 3468725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 3610894 - 3610811
Alignment:
Q  108 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 189  Q
    |||||||||| ||||| || |||||||||||||||||||| || | |  |||||||||||||| || ||||||||  |||||||    
T  3610894 ataaacacttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagc 3610811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 26935696 - 26935573
Alignment:
Q  116 ttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagaca 213  Q
    |||||||| || ||||| ||| ||||||||||||||| |||  |||||||| | || | | ||||||| ||| ||| |||||||||| || ||||| | |    
T  26935696 ttatcatataagtgcttttgtgtaagctatttttataacaaatgataaaataaggttaaattgttttcatatgagctattttcataatctattctaaaga 26935597  T
Q  214 acatacggaaataagctgaaaaca 237  Q
     | || ||||||||||||||||||    
T  26935596 gcttatggaaataagctgaaaaca 26935573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 22388093 - 22388014
Alignment:
Q  74 agtttggataaataacctaattaaa-gcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 152  Q
    |||||||||||| ||| |||||||  ||||| || |||||||||||||||  || |||||||| ||||||||||| ||||    
T  22388093 agtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctata 22388014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 7244626 - 7244693
Alignment:
Q  116 ttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 181  Q
    |||||||| || |||||||||||||||||||| |||| |  |||||||||  |||||| |||||||||    
T  7244626 ttatcatataagtgcttatgtataagctatttctatatcaaaagataaaagaaagtcaaactgttttc 7244693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 23721417 - 23721461
Alignment:
Q  108 ataaacacttatcataaaattgcttatgtataagctatttttata 152  Q
    ||||||||||||||| ||| ||||||||||||| |||||| ||||    
T  23721417 ataaacacttatcatcaaagtgcttatgtataaactatttctata 23721461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 33894559 - 33894621
Alignment:
Q  128 tgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 189  Q
    |||||||||||||||||||| |||| |  |||||||||| |||||| ||||||||| |||||||    
T  33894559 tgcttatgtataagctatttctataacaaaagataaaat-aagtcaaactgttttcatataagc 33894621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 35536030 - 35536105
Alignment:
Q  115 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataag 188  Q
    ||||||||| ||  ||||||||||||||||||| |||| |  |||||||||| |||||| | ||||||| ||||||    
T  35536030 cttatcatataaaggcttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 39345508 - 39345581
Alignment:
Q  220 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 295  Q
    ||||||||||||||| |||||| ||  ||||||||||    ||||||||| |||||| | ||||||||||||||||    
T  39345508 ggaaataagctgaaagcaacttatg--gacatgtcataaactgtttccatgaactctaccaaacagtctcacaagt 39345581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 45078217 - 45078253
Alignment:
Q  116 ttatcataaaattgcttatgtataagctatttttata 152  Q
    |||||||| || |||||||||||||||||||||||||    
T  45078217 ttatcatataagtgcttatgtataagctatttttata 45078253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 44207697 - 44207750
Alignment:
Q  118 atcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 171  Q
    |||||| || ||||||| | ||||||||||||||||||||||||||| ||||||    
T  44207697 atcatacaagtgcttatatgtaagctatttttatagcaagataaaataaagtca 44207750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 15581316 - 15581367
Alignment:
Q  247 gacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 298  Q
    ||||||||||  ||||||||||||| |||||| ||||| |||||||||||||    
T  15581316 gacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgct 15581367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 11639568 - 11639512
Alignment:
Q  108 ataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaat 164  Q
    |||||||||||||||  || | ||||||| ||||||||||||||  |||||||||||    
T  11639568 ataaacacttatcatgtaagtccttatgtgtaagctatttttatgacaagataaaat 11639512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 28837075 - 28837002
Alignment:
Q  223 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 298  Q
    ||||||||||||||| ||| ||||  ||||||||| | |||||   |||| ||||| |||||||||||||||||||    
T  28837075 aataagctgaaaacagcttatgtg--catgtcattagctgttttggttaagtcttctaaacagtctcacaagtgct 28837002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 30014139 - 30014095
Alignment:
Q  192 ttttcataagcttttctagacaacatacggaaataagctgaaaac 236  Q
    |||||||||||| | ||||| ||| ||||||||||||||||||||    
T  30014139 ttttcataagctatgctagagaacttacggaaataagctgaaaac 30014095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 44422642 - 44422698
Alignment:
Q  133 atgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 189  Q
    |||||||||||||||||||| || |||||||| |  ||| ||||||||| |||||||    
T  44422642 atgtataagctatttttataacatgataaaataatctcaaactgttttcatataagc 44422698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 50764521 - 50764489
Alignment:
Q  115 cttatcataaaattgcttatgtataagctattt 147  Q
    ||||||||| |||||||||||||||||||||||    
T  50764521 cttatcatacaattgcttatgtataagctattt 50764489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 21410 - 21335
Alignment:
Q  130 cttatgtataagctatttttatag--caagataaaatgaagtcatactgttttcctataagcgattttcataagct 203  Q
    ||||||||||||||||||||||||   |||||||||| |||| | | ||||||| |||||||  ||||||||||||    
T  21410 cttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagct 21335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 32920543 - 32920489
Alignment:
Q  117 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 171  Q
    ||||||| || || ||||| |||||||||||||||| ||||||||||| ||||||    
T  32920543 tatcatataagtgtttatggataagctatttttataacaagataaaataaagtca 32920489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 47970240 - 47970309
Alignment:
Q  114 acttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 181  Q
    |||| ||||| || |||||||||||||||||||| |||| |  ||||||||||||||||| ||| |||||    
T  47970240 acttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttc 47970309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 55437415 - 55437345
Alignment:
Q  131 ttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataag 201  Q
    |||| |||||||||||| |||| ||| ||||||| |||||| | | ||||| ||||||| |||||||||||    
T  55437415 ttatctataagctatttctataacaatataaaataaagtcaaattattttcatataagctattttcataag 55437345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 9843285 - 9843212
Alignment:
Q  221 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 296  Q
    |||||||||||||||||||  || |||| |||| ||| ||||||| | | | ||||| ||||||||||||||||||    
T  9843285 gaaataagctgaaaacaac--ttatggatatgtgattagttgttttcttaatctctttgaaacagtctcacaagtg 9843212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 10650 - 10577
Alignment:
Q  220 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 295  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||| ||| | || |   ||||||||||||||||    
T  10650 ggaaataagctgaaaacaac--ttatggacatgtcattagttgtttacataagctttgtcaaacagtctcacaagt 10577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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