View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16283_high_7 (Length: 310)
Name: NF16283_high_7
Description: NF16283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16283_high_7 |
 | |
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| [»] chr1 (12 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 13008130 - 13008430
Alignment:
| Q |
10 |
atgaatgaaaaattgttcgctgttgtttccatatgtgggaactagaatttaaaataccacctccaataaaatcaaaaatttctttgaagttggaccccct |
109 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13008130 |
atgaatgaaacattgttcgctgttgtttccatatgtgggaactagaatttaaaataccatctccaaaaaaatcaaaaatttctttgaagttggaccccct |
13008229 |
T |
|
| Q |
110 |
tccgtagttgccaaaattcttgctcgcgatgtgatcaacattcatcggatcactggtacctataaagcttgtgtttgtgaaccaagctccttcaaatcga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13008230 |
tccgtagttgccaaaattcttgctcgcgatgtgatcaacattcatcggatcactggtaccgataaagcttgtgtttgtgaaccaagctccttcaaatcga |
13008329 |
T |
|
| Q |
210 |
aatgttcctccatgatgtttcaaaaataaggttgtatgatcatggaaattggacaggtgacgcaaaatcccaggtagcataccaattattggccaattaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13008330 |
aatgttcctccatgatgtttcaaaaataaggttgtatgatcatggaaattggacaggtgatgcaaaatcccaggtagcataccaattattggccaattaa |
13008429 |
T |
|
| Q |
310 |
t |
310 |
Q |
| |
|
| |
|
|
| T |
13008430 |
t |
13008430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 310
Target Start/End: Complemental strand, 13069438 - 13069138
Alignment:
| Q |
10 |
atgaatgaaaaattgttcgctgttgtttccatatgtgggaactagaatttaaaataccacctccaataaaatcaaaaatttctttgaagttggaccccct |
109 |
Q |
| |
|
|||||||||| ||||| | |||||||||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13069438 |
atgaatgaaacattgtcctctgttgtttccatacgtgggaattagaatttaaaataccatctccaaaaaaatcaaaaatttctttgaagttggaccccct |
13069339 |
T |
|
| Q |
110 |
tccgtagttgccaaaattcttgctcgcgatgtgatcaacattcatcggatcactggtacctataaagcttgtgtttgtgaaccaagctccttcaaatcga |
209 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |||||| | |
|
|
| T |
13069338 |
tccgtagttgccaaaattcttgctcgcaatgtgttcaacattcattggatcactggtaccaataaagcttgtgtttgtgaaccaggctcctccaaatcta |
13069239 |
T |
|
| Q |
210 |
aatgttcctccatgatgtttcaaaaataaggttgtatgatcatggaaattggacaggtgacgcaaaatcccaggtagcataccaattattggccaattaa |
309 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||| || || || | | |||||||||||| |||||||||||||| |
|
|
| T |
13069238 |
aacgttcctccatgatgtttcaaaattaaggttgcacgatcatggaaattggacaggttacacataagcgccagtagcataccaaatattggccaattaa |
13069139 |
T |
|
| Q |
310 |
t |
310 |
Q |
| |
|
| |
|
|
| T |
13069138 |
t |
13069138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 13214418 - 13214715
Alignment:
| Q |
10 |
atgaatgaaaaattgttcgctgttgtttccatatgtgggaactagaatttaaaataccacctccaataaaatcaaaaatttctttgaagttggaccccct |
109 |
Q |
| |
|
|||||| ||| ||||| | ||||||||| |||| || |||| ||||||||||||||| |||||||| ||||| |||||| |||| |||||||| ||||| |
|
|
| T |
13214418 |
atgaattaaacattgtcctctgttgttttcatacgtcggaattagaatttaaaatactacctccaaaaaaataaaaaatatcttggaagttggggcccct |
13214517 |
T |
|
| Q |
110 |
tccgtagttgccaaaattcttgctcgcgatgtgatcaacattcatcggatcactggtacctataaagcttgtgtttgtgaaccaagctccttcaaatcga |
209 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
13214518 |
tccgtaattgccaaaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagcttgtgtttgtgaaccaggctcactcaaatcga |
13214617 |
T |
|
| Q |
210 |
aatgttcctccatgatgtttcaaaaataaggttgtatgatcatggaaattggacaggtgacgcaaaatcccaggtagcataccaattattggccaatt |
307 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13214618 |
aacattcctccatgatgtttcaaaactaaggttgtataatcatggaaattggacaggggacgcaaaatcgtcggtagcataccaattattggccaatt |
13214715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 29 - 307
Target Start/End: Original strand, 13101949 - 13102227
Alignment:
| Q |
29 |
ctgttgtttccatatgtgggaactagaatttaaaataccacctccaataaaatcaaaaatttctttgaagttggacccccttccgtagttgccaaaattc |
128 |
Q |
| |
|
|||||||||||||| || || | |||||||||||||| |||| || ||||| |||||| |||| ||||||||||||||||||||| |||| ||||||| |
|
|
| T |
13101949 |
ctgttgtttccatacgtcgggatgagaatttaaaatactaccttgaaaaaaataaaaaatatcttggaagttggacccccttccgtaattgctaaaattc |
13102048 |
T |
|
| Q |
129 |
ttgctcgcgatgtgatcaacattcatcggatcactggtacctataaagcttgtgtttgtgaaccaagctccttcaaatcgaaatgttcctccatgatgtt |
228 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
13102049 |
ttgctcgcaatgtgattaacattcattggatcactggtaccgataaagccagtgtttgtgaaccaggctccttcaaatcgaaacgttcctccatgatgtt |
13102148 |
T |
|
| Q |
229 |
tcaaaaataaggttgtatgatcatggaaattggacaggtgacgcaaaatcccaggtagcataccaattattggccaatt |
307 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| |
|
|
| T |
13102149 |
ttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgctggtagcataccaattattggccaatt |
13102227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 13205401 - 13205701
Alignment:
| Q |
10 |
atgaatgaaaaattgttcgctgttgtttccatatgtgggaactagaatttaaaataccacctccaataaaatcaaaaatttctttgaagttggaccccct |
109 |
Q |
| |
|
|||||||||| ||||| | |||||||||||||| || |||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13205401 |
atgaatgaaacattgtcctctgttgtttccatacgttggaattagaatttaaaataccatctccaaaaaaatcaaaaatttctttgaagttggaccccct |
13205500 |
T |
|
| Q |
110 |
tccgtagttgccaaaattcttgctcgcgatgtgatcaacattcatcggatcactggtacctataaagcttgtgtttgtgaaccaagctccttcaaatcga |
209 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||||||| |||||||| ||| | ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13205501 |
tccgtagttgccaaaattcttgcctgcaatgtggtcaacattcaatggatcacttgtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcga |
13205600 |
T |
|
| Q |
210 |
aatgttcctccatgatgtttcaaaaataaggttgtatgatcatggaaattggacaggtgacgcaaaatcccaggtagcataccaattattggccaattaa |
309 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||| || ||||||||| ||| | | ||||||||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
13205601 |
aatgttcctccattacgtttcaaaattaaggttagataatcatggaatttgaataagtgacgcaaaagcgacggtagcataccaattattggcaaattaa |
13205700 |
T |
|
| Q |
310 |
t |
310 |
Q |
| |
|
| |
|
|
| T |
13205701 |
t |
13205701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 35 - 307
Target Start/End: Complemental strand, 30367330 - 30367055
Alignment:
| Q |
35 |
tttccatatgtgggaactagaatttaaaataccacctccaataaaatcaaaaatttctttgaagttg---gacccccttccgtagttgccaaaattcttg |
131 |
Q |
| |
|
|||||||| ||||||| |||||| | |||||||||||||| ||| ||||||||||||| |||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
30367330 |
tttccatacgtgggaatcagaattgacaataccacctccaaaaaattcaaaaatttcttggaagttattagaccccctcccgtagttgccaaaattcttg |
30367231 |
T |
|
| Q |
132 |
ctcgcgatgtgatcaacattcatcggatcactggtacctataaagcttgtgtttgtgaaccaagctccttcaaatcgaaatgttcctccatgatgtttca |
231 |
Q |
| |
|
|| |||||||| | ||| ||||| |||||| ||| | |||||||||||||||||||| || | ||||||||||||||| |||||||||||| ||||| |
|
|
| T |
30367230 |
cttgcgatgtggttaacgttcattggatcagcagtagcgataaagcttgtgtttgtgaatcagggtccttcaaatcgaaacgttcctccatgacatttca |
30367131 |
T |
|
| Q |
232 |
aaaataaggttgtatgatcatggaaattggacaggtgacgcaaaatcccaggtagcataccaattattggccaatt |
307 |
Q |
| |
|
||| |||||| ||| |||| |||||| ||||| |||||||| | | ||||||||||| |||||||||||| |
|
|
| T |
30367130 |
aaactaaggtgaaatggtcattgaaatttgacagatgacgcaacaccgacaatagcataccaactattggccaatt |
30367055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 302
Target Start/End: Original strand, 13005874 - 13006056
Alignment:
| Q |
120 |
ccaaaattcttgctcgcgatgtgatcaacattcatcggatcactggtacctataaagcttgtgtttgtgaaccaagctccttcaaatcgaaatgttcctc |
219 |
Q |
| |
|
|||||||||||||| | |||||| ||||| ||||| |||||| |||| | ||||||||||| |||||| | || | ||||| |||||||| ||||||| |
|
|
| T |
13005874 |
ccaaaattcttgcttgtgatgtggtcaacgttcattggatcagtggtcgcgataaagcttgtatttgtgtatcagggcccttcgaatcgaaaagttcctc |
13005973 |
T |
|
| Q |
220 |
catgatgtttcaaaaataaggttgtatgatcatggaaattggacaggtgacgcaaaatcccaggtagcataccaattattggc |
302 |
Q |
| |
|
||||||| || |||| ||||||| || |||||| |||||||| || |||| ||||| || |||||||||||| ||| |||| |
|
|
| T |
13005974 |
catgatgctttaaaacaaaggttgcataatcatgtaaattggatagatgactcaaaaacctcggtagcataccatttactggc |
13006056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 13162629 - 13162766
Alignment:
| Q |
173 |
aaagcttgtgtttgtgaaccaagctccttcaaatcgaaatgttcctccatgatgtttcaaaaataaggttgtatgatcatggaaattggacaggtgacgc |
272 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||||||| | |||||||||| | | ||||||| | ||||| || ||||||||||| ||| || ||| || |
|
|
| T |
13162629 |
aaagcttgtgtttgtgaaccagggtccttgaaatcgataagttcctccattacgcttcaaaacaatggttgcataatcatggaaatcggagagatgatgc |
13162728 |
T |
|
| Q |
273 |
aaaatcccaggtagcataccaattattggccaattaat |
310 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
13162729 |
aaaaatgttggtagcataccaattattggccaattaat |
13162766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 262
Target Start/End: Complemental strand, 13064392 - 13064211
Alignment:
| Q |
81 |
tcaaaaatttctttgaagttggacccccttccgtagttgccaaaattcttgctcgcgatgtgatcaacattcatcggatcactggtacctataaagcttg |
180 |
Q |
| |
|
|||||| |||||||||| || ||||| || ||||||| |||||||||||||| ||||||| | |||||||| ||||| |||||| ||| | | |
|
|
| T |
13064392 |
tcaaaagtttctttgaaattagaccctttttcgtagtttccaaaattcttgcttacgatgtggtgtacattcattggatcgctggtaaggataccagtgg |
13064293 |
T |
|
| Q |
181 |
tgtttgtgaaccaagctccttcaaatcgaaatgttcctccatgatgtttcaaaaataaggttgtatgatcatggaaattgga |
262 |
Q |
| |
|
|||||||||||| | ||||||||| | ||| || || |||||||||||||||| ||||||| ||| ||||| | ||||||| |
|
|
| T |
13064292 |
agtttgtgaaccaggatccttcaaacctaaaagtgccaccatgatgtttcaaaactaaggttatataatcatagtaattgga |
13064211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 307
Target Start/End: Complemental strand, 19278233 - 19278109
Alignment:
| Q |
183 |
tttgtgaaccaagctccttcaaatcgaaatgttcctccatgatgtttcaaaaataaggttgtatgatcatggaaattggacaggtgacgcaaaatcccag |
282 |
Q |
| |
|
||||||||||||| ||||| ||| |||| || ||||||||||||||||||| |||||||| || |||||| | ||||| |||| | |||||| | |
|
|
| T |
19278233 |
tttgtgaaccaaggtcctttaaactgaaaagtacctccatgatgtttcaaaactaaggttgcataatcatgaatcttggataggttatgcaaaactgatg |
19278134 |
T |
|
| Q |
283 |
gtagcataccaattattggccaatt |
307 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
19278133 |
gtagcatgccaattattggccaatt |
19278109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 13130934 - 13131073
Alignment:
| Q |
171 |
ataaagcttgtgtttgtgaaccaagctccttcaaatcgaaatgttcctccatgatgtttcaaaaataaggttgtatgatcatggaaattggacaggtgac |
270 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||||| | |||||||||| | | ||||||| | ||||| || ||||||| ||| ||| || |||| |
|
|
| T |
13130934 |
ataaagcttgtgtttgtgaaccagggcccttgaaatcgacaagttcctccataacgcttcaaaacaatggttgaataatcatggtaatcggagagatgac |
13131033 |
T |
|
| Q |
271 |
gcaaaatcccaggtagcataccaattattggccaattaat |
310 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
13131034 |
acaaaaatgacggtagtataccaattattggccaattaat |
13131073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 13095505 - 13095644
Alignment:
| Q |
171 |
ataaagcttgtgtttgtgaaccaagctccttcaaatcgaaatgttcctccatgatgtttcaaaaataaggttgtatgatcatggaaattggacaggtgac |
270 |
Q |
| |
|
||||||||| ||| |||||||| | |||| || | |||| ||||||||||| | ||||||| | ||||| || ||||||||||| ||| || ||| |
|
|
| T |
13095505 |
ataaagcttatgtcagtgaaccagggccctttaattagaaaagttcctccatggcgcttcaaaacaatggttgcataatcatggaaatcggagagatgat |
13095604 |
T |
|
| Q |
271 |
gcaaaatcccaggtagcataccaattattggccaattaat |
310 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
13095605 |
gcaaaaatgccggtagcataccaattattggccaattaat |
13095644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 35 - 307
Target Start/End: Original strand, 31376465 - 31376740
Alignment:
| Q |
35 |
tttccatatgtgggaactagaatttaaaataccacctccaataaaatcaaaaatttctttgaagttg---gacccccttccgtagttgccaaaattcttg |
131 |
Q |
| |
|
|||||||| ||||||| |||||| | |||||||||||||| ||| ||||||||||||| ||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
31376465 |
tttccatacgtgggaatcagaattgacaataccacctccaaaaaattcaaaaatttcttggaagttgatagaccccctcccgtagttgccaaaattcttg |
31376564 |
T |
|
| Q |
132 |
ctcgcgatgtgatcaacattcatcggatcactggtacctataaagcttgtgtttgtgaaccaagctccttcaaatcgaaatgttcctccatgatgtttca |
231 |
Q |
| |
|
|| |||||||| | ||| || || |||||| || | ||||||||||||||||||||||| | ||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
31376565 |
cttgcgatgtggttaacgttaattggatcagcagtggcgataaagcttgtgtttgtgaaccagggtccttcaaatcgaaacattccttcatgacctttca |
31376664 |
T |
|
| Q |
232 |
aaaataaggttgtatgatcatggaaattggacaggtgacgcaaaatcccaggtagcataccaattattggccaatt |
307 |
Q |
| |
|
||| |||||| ||| | || |||||| ||||| |||||||| | | |||||||||||| |||||||||||| |
|
|
| T |
31376665 |
aaactaaggtgacatggttattgaaatttgacagatgacgcaacaccgacagtagcataccaactattggccaatt |
31376740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 31385364 - 31385305
Alignment:
| Q |
171 |
ataaagcttgtgtttgtgaaccaagctccttcaaatcgaaatgttcctccatgatgtttc |
230 |
Q |
| |
|
||||||||||||||||||||||| | | |||| ||| |||| |||||||||||| ||||| |
|
|
| T |
31385364 |
ataaagcttgtgtttgtgaaccaggatacttcgaattgaaacgttcctccatgacgtttc |
31385305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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