View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16283_low_10 (Length: 281)
Name: NF16283_low_10
Description: NF16283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16283_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 9171814 - 9172049
Alignment:
| Q |
7 |
gtgaaaagaagtggaactttagtatctcatctacaatatttggatgatactttgtgccnnnnnnnntattcttaaacggattgttgtcacgctgttgctt |
106 |
Q |
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| T |
9171814 |
gtgaaaagaagaggaactttagtatctcatctacaatatttggatgatactttgtgtcaaaaaaaaaattcttaaacggattgttgtcacgttgttgctt |
9171913 |
T |
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| Q |
107 |
ctacttggtgttgtt-cctttcgttgtcattgttttcaccgccgcatttctcagtacaaaataccacctctgaacatgtcattgacgtcggcgcaaggga |
205 |
Q |
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| T |
9171914 |
ctacttggtgttgttgcctttcattgtcattgttttcaccgccgcatttctcagtacaaaataccacctctgaacgtgtcattgacgtcggcgcaaggga |
9172013 |
T |
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| Q |
206 |
tttctgattcaggggagattcattagcaacgccgac |
241 |
Q |
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| T |
9172014 |
tttctgatttaggggagattcatcagaaacgccgac |
9172049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 9159444 - 9159415
Alignment:
| Q |
33 |
tcatctacaatatttggatgatactttgtg |
62 |
Q |
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| T |
9159444 |
tcatctacaatatttggatgatactttgtg |
9159415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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