View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16283_low_11 (Length: 279)
Name: NF16283_low_11
Description: NF16283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16283_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 33 - 261
Target Start/End: Complemental strand, 50387634 - 50387406
Alignment:
| Q |
33 |
tgaagaaaatgagatgtagaagattccttatgcatcgacaattgggagtctaatgtatgcacaagtttgtatgcgtctagatataatgtacgggatgttg |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50387634 |
tgaagaaaatgagatgtagaagattccttatgcatcgacaattgggagtctaatgtatgcacaagtttgtatgtgtctagatataatgtacgggatgttg |
50387535 |
T |
|
| Q |
133 |
gacatgtatttgagcaatccatgattagagcatcagaaagcaacgaaataagtcatgcaatatttaaagagaacaaaagactacattctcgcatatcaga |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50387534 |
gacatgtatttgagcaatccatgattagagcatcagaaagcaacgaaataagtcatgcaatatttaaagagaacaaaagactacattctcgcatatcaga |
50387435 |
T |
|
| Q |
233 |
ggttagatcagcttcagaacattggatat |
261 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
50387434 |
ggttagatcagcttcagaacattggatat |
50387406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 29242652 - 29242547
Alignment:
| Q |
138 |
gtatttgagcaatccatgattagagcatcagaaagcaacgaaataagtcatgcaatatttaaagagaacaaaagactacattctcgc-atatcagaggtt |
236 |
Q |
| |
|
||||||||| ||| || ||||||| |||| ||||||||| |||| |||||||| || ||||||||||||||||||||||| ||| | ||||| |||||| |
|
|
| T |
29242652 |
gtatttgagtaattcaggattagaccatcggaaagcaaccaaatgggtcatgcagtacttaaagagaacaaaagactacatgctcacaatatcggaggtt |
29242553 |
T |
|
| Q |
237 |
agatca |
242 |
Q |
| |
|
|||||| |
|
|
| T |
29242552 |
agatca |
29242547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University