View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16283_low_13 (Length: 268)
Name: NF16283_low_13
Description: NF16283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16283_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 69 - 249
Target Start/End: Original strand, 36732435 - 36732615
Alignment:
| Q |
69 |
taaaacaaattttgagaataatttttaaagatctgctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttcat |
168 |
Q |
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| T |
36732435 |
taaaacaaattttgagaataatttttaaagatctgctaatccgactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttcat |
36732534 |
T |
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| Q |
169 |
aatggtccttgacacactaaaacaactttcattggttggaagcgttcacatgacggatgggttaaactcaattgtgatagg |
249 |
Q |
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| T |
36732535 |
aatgatccttgacatactaaaacaactttcattggttggaagcgttctcatgaaggatgggttaaactcaattgtaatagg |
36732615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 36731609 - 36731655
Alignment:
| Q |
25 |
atttaagtacttaagttatatctccacgtctagctcagcatacttaa |
71 |
Q |
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| T |
36731609 |
atttaagtacttaagttatatctctacgtctagctcatcatacttaa |
36731655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 246
Target Start/End: Complemental strand, 41550578 - 41550401
Alignment:
| Q |
69 |
taaaacaaattttgagaataatttttaaagatctgctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttcat |
168 |
Q |
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| T |
41550578 |
taaaacaatttttgaggataattttcaaagaccagctaatccaactagtgtcattcaggccttctctagcactatcgaagattgcaccaataatcttctt |
41550479 |
T |
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| Q |
169 |
aatggtccttgacacactaaaacaactttcattggttggaagcgttcacatgacggatgggttaaactcaattgtgat |
246 |
Q |
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| T |
41550478 |
caaggtcctcggcacactgaaacaattttcattggttggaagcatcctcaggagggatgggttaaactcaattgtgat |
41550401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 246
Target Start/End: Original strand, 37752240 - 37752385
Alignment:
| Q |
103 |
gctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaatta---tcttcataatggtccttgacacactaaaacaactttca |
199 |
Q |
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| T |
37752240 |
gctaatccaactagtgtcattcaaatgttctctagcactatcgaagattgcaccaataatcttcttcagaatggtcctcaacacactgaaacggttttca |
37752339 |
T |
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| Q |
200 |
ttggttggaagcgttcacatgacggatgggttaaactcaattgtgat |
246 |
Q |
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| T |
37752340 |
ttggttggaagtgtcctcatgagggat-ggttaaactcaattatgat |
37752385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 29515562 - 29515420
Alignment:
| Q |
103 |
gctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttcataatggtccttgacacactaaaacaactttcattg |
202 |
Q |
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| T |
29515562 |
gctaatccaactagtgtcatccaagccttctctagaactttcgaagactacaccaatactcttcttca-ggtcctcgacatgctgaaccaattttcactg |
29515464 |
T |
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| Q |
203 |
gttggaagcgttcacatgacggatgggttaaactcaattgtgat |
246 |
Q |
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| T |
29515463 |
gctggaagcatcctcaggaaggatggattaaactcaattgtgat |
29515420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 6260936 - 6261016
Alignment:
| Q |
166 |
cataatggtccttgacacactaaaacaactttcattggttggaagcgttcacatgacggatgggttaaactcaattgtgat |
246 |
Q |
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| T |
6260936 |
catattggtcatcgacacattgaaacaatttttattggttggaagcgtcctcatgagagatggattaaactcaattgtgat |
6261016 |
T |
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