View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16283_low_2 (Length: 415)
Name: NF16283_low_2
Description: NF16283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16283_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 9 - 399
Target Start/End: Original strand, 40442094 - 40442484
Alignment:
| Q |
9 |
gattatactgatgcatctttacttgcgtacaaattttcttcacaaaattttaatgagtatacaaattttcaagcacacggagtatgatagaaactaaaag |
108 |
Q |
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| T |
40442094 |
gattatactgatgcatctttacttgcgtacaaattttcttcacaaaattttaatgagtatacaaattttcaagcacacggagtatgatagaaactaaaag |
40442193 |
T |
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| Q |
109 |
tggaatccacttgtcttaactcttatccctggaatctgtaggtacaacacaaccacacaatcttttaccaacttgatcaatattttggacatccttgaga |
208 |
Q |
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| T |
40442194 |
tggaatccacttgtcttaactcttatccctggaatctgtaggcacaacacaaccacacaatcttttaccaacttgatcaatattttggacatccttgtga |
40442293 |
T |
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| Q |
209 |
ttgaggcactgattacttttctatgtccatacatgttcattgaaattgttcctcttatcctaagccatgaaaacaatatctatatagacttgctaatttt |
308 |
Q |
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| T |
40442294 |
ttgaggcactgattacttttctatgtccatacatgttcattgaaattgttcctcttatcctaagccatgaaaacaatatctatatagacttgctaatttt |
40442393 |
T |
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| Q |
309 |
tcaaatgagaagatagcttggcttctaattccataaataccatgtgcccatgcttgagggtgttgcttttctgttagtatctgttgttctt |
399 |
Q |
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| T |
40442394 |
tcaaatgagaagatagcttggcttctaattccataaataccatgtgcccatgcttgagggtgttgcttttctgttagtatctgttgttctt |
40442484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 18812887 - 18812934
Alignment:
| Q |
9 |
gattatactgatgcatctttacttgcgtacaaattttcttcacaaaat |
56 |
Q |
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| T |
18812887 |
gattatattgatgcacctttacttacatacaaattttcttcacaaaat |
18812934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 13063691 - 13063631
Alignment:
| Q |
314 |
tgagaagatagcttggcttctaattccataaataccatgtgcccatgcttgagggtgttgc |
374 |
Q |
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||||| ||||||||||||||||||||| ||| |||| |||| |||||||||||| |||| |
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| T |
13063691 |
tgagatgatagcttggcttctaattcctgaaacaccaaatgccaatgcttgagggtattgc |
13063631 |
T |
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