View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16283_low_3 (Length: 366)
Name: NF16283_low_3
Description: NF16283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16283_low_3 |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 24031625 - 24031288
Alignment:
| Q |
18 |
atatagatctccaaaagtacatcacttacataataatccataatcatattaagttccaaaagacataaatattagcaatgtcctaaacagtttgaaatac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24031625 |
atatagatctccaaaagtacatcacttacataataatccataatcatattaagttccaaaagacataaatattagcaatgtcctaaacagtttgaaatac |
24031526 |
T |
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| Q |
118 |
tcaaatcgaaacataagtgttacaacccaaagatatgataggtaaagcaagatacacagcgtagcatctaactaatcgcctcaccacaaatagctaaaca |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24031525 |
tcaaatcgaaacataagtgttacaacccaaaaatatgataggtaaagcaagatacacagcgtagcatctagctaatcgcctcaccacaaatagctaaaca |
24031426 |
T |
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| Q |
218 |
aacacttaagtttgtactgcacatacacataataaaggattagataatgcaatcataaaataaataactaagtacaaggaataccaaacacttggtgaaa |
317 |
Q |
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| T |
24031425 |
agcacttaagtttgtactgcacatacacataataaaggattagataatgcaatcataaaataaataactaagtacaaggaataccaaacacttggtgaaa |
24031326 |
T |
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| Q |
318 |
tagaagcattaaacttcaagcacaagtatacaccctat |
355 |
Q |
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| T |
24031325 |
tagaagcattaaacttcaagcataagtatacaccctat |
24031288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 14862 - 14756
Alignment:
| Q |
18 |
atatagatctccaaaagtacatcacttacataataatccataatcatattaagttccaaaagacataaatattagcaatgtcctaaacagtttgaaatac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14862 |
atatagatctccaaaagtacatcacttacataataatccataatcatattaagttccaaaagacataaatattagcaatgtcctaaacagtttgaaatac |
14763 |
T |
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| Q |
118 |
tcaaatc |
124 |
Q |
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||||||| |
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| T |
14762 |
tcaaatc |
14756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 17038008 - 17038114
Alignment:
| Q |
18 |
atatagatctccaaaagtacatcacttacataataatccataatcatattaagttccaaaagacataaatattagcaatgtcctaaacagtttgaaatac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17038008 |
atatagatctccaaaagtacatcacttacataataatccataatcatattaagttccaaaagacataaatattagcaatgtcctaaacagtttgaaatac |
17038107 |
T |
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| Q |
118 |
tcaaatc |
124 |
Q |
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||||||| |
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| T |
17038108 |
tcaaatc |
17038114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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