View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16283_low_4 (Length: 344)
Name: NF16283_low_4
Description: NF16283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16283_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 28319964 - 28320291
Alignment:
| Q |
17 |
acatgagaacttcaattataatgtattttttattgtaatattgttctagtgacgtgataaactagagggcaagagacatgaagaaaatnnnnnnnnttat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| |||| |
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| T |
28319964 |
acatgagaacttcaattataatgtattttttattgtaaaattgttctagtgacatgataaactagggggcaagagacatgaagaaaataaaaaaaattat |
28320063 |
T |
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| Q |
117 |
ctatagtataagttgtataaaataccaaaataannnnnnngtccaccaaacatcatataagataaataaattgcccaatattgtaaaattttgccatgcc |
216 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28320064 |
ctatagtataagttgtataaaatactaaaataatttttttgtccaccaaacatcatataagataaataaattgcccaatattgtaaaattttgccatgcc |
28320163 |
T |
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| Q |
217 |
ttccttatgttgtacttttatgttatgtacttaattttaactgatcaaacacaccttcaagatgcttgttatttatatcgcttaacttttcaaaggatat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28320164 |
ttccttatgttgtacttttatgttatgtacttaattttaactgatcaaacacaccttcaagatgcttgttatttatgtcgcttaacttttcaaaggatat |
28320263 |
T |
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| Q |
317 |
tcaacatgttatttactatatatcttta |
344 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
28320264 |
tcaacatgttatttactatatatcttta |
28320291 |
T |
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