View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16283_low_5 (Length: 333)
Name: NF16283_low_5
Description: NF16283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16283_low_5 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 29 - 331
Target Start/End: Complemental strand, 29054617 - 29054336
Alignment:
| Q |
29 |
tgtgattattgctgttagagactccttgaggttttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattatttgactcagattattgg |
128 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29054617 |
tgtgattattactgttagagactccttgaggttttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattatttgactcagattattgg |
29054518 |
T |
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| Q |
129 |
gaataagaggtcacaatgaccctatttgagcgtgtctaactcaaatttcatcagattgttcgtgactctctcgtgggtatgaacccactcgctcgactcg |
228 |
Q |
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| T |
29054517 |
gaataagaggtcacaatgaccctatttgagcgtgtctaactcaaatttcatcagattgttcatgactctctcgtgcgtatgaacccactcgctcgactcg |
29054418 |
T |
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| Q |
229 |
tggcgattctgtctaacttgcttgagcatctcactacgaactgtctcttagatcatgtattttattctctcaatttgttccagagatcgttcatctcact |
328 |
Q |
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| T |
29054417 |
tggcgattctgt---------------------ctacgaactgtctcttagatcatgtattttattctctcaatttgttccagagatcgttcatgtctct |
29054339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 34635456 - 34635308
Alignment:
| Q |
28 |
atgtgattattgctgttagagactccttgaggttttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattatttgactcagattattg |
127 |
Q |
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| T |
34635456 |
atgtgatgattgttgtcagagactccttcaggtttcatcacttcaaaaatggaaattgttcatgtaatgatttatggtgactatttgactaagattattg |
34635357 |
T |
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| Q |
128 |
ggaataagaggtcacaatgaccctatttgagcgtgtctaactcaaattt |
176 |
Q |
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| T |
34635356 |
ggaataaggggtcacaatgatcctatctgagcctttccaactcaaattt |
34635308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 29312412 - 29312495
Alignment:
| Q |
30 |
gtgattattgctgttagagactccttgaggttttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattattt |
113 |
Q |
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| T |
29312412 |
gtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtgaatattt |
29312495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 36 - 176
Target Start/End: Original strand, 28743903 - 28744043
Alignment:
| Q |
36 |
attgctgttagagactccttgaggttttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattatttgactcagattattgggaataag |
135 |
Q |
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|||| ||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
28743903 |
attgttgtcagagactccttgaggtttcatcacttcaaaaatggaaattgttcttgtaaagacttatggtgattatttgaatcagattattgggattaag |
28744002 |
T |
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| Q |
136 |
aggtcacaatgaccctatttgagcgtgtctaactcaaattt |
176 |
Q |
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| T |
28744003 |
tggtgacgataatcctatctgagtttgtctaactcaaattt |
28744043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 13792330 - 13792255
Alignment:
| Q |
45 |
agagactccttgaggttttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattatttgactcag |
120 |
Q |
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| T |
13792330 |
agagactccttgaggtttcatcacttcaaaaatggaaattgttcttgtaaagatttttggtgattatttgactcag |
13792255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 13792149 - 13792094
Alignment:
| Q |
108 |
ttatttgactcagattattgggaataagaggtcacaatgaccctatttgagcgtgt |
163 |
Q |
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| T |
13792149 |
ttatttgactcggattattgggaataagtcgtcacaatgatcctatctgagtgtgt |
13792094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 4458 - 4606
Alignment:
| Q |
28 |
atgtgattattgctgttagagactccttgaggttttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattatttgactcagattattg |
127 |
Q |
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||||||| |||| ||| ||||||||||| |||||| |||||||||||||||||| |||||| ||||| || ||||||||| ||||||||| ||||||||| |
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| T |
4458 |
atgtgatgattgttgtcagagactccttcaggtttcatcacttcaaaaatggaaattgttcatgtaatgatttatggtgactatttgactaagattattg |
4557 |
T |
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| Q |
128 |
ggaataagaggtcacaatgaccctatttgagcgtgtctaactcaaattt |
176 |
Q |
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|||||||| ||||||||||| ||||| ||||| | || ||||||||||| |
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| T |
4558 |
ggaataaggggtcacaatgatcctatctgagcctttccaactcaaattt |
4606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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