View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16283_low_8 (Length: 308)
Name: NF16283_low_8
Description: NF16283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16283_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 34873885 - 34873608
Alignment:
| Q |
20 |
acaagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactgcacaatcctcttttctcatcaactgt |
119 |
Q |
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| T |
34873885 |
acaagcttcaagaactatgtcaaaaaaactcataccctcttcccgaataccaaacaacccatgaaggaccactgcacaatcctcttttctcatcaaccgt |
34873786 |
T |
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| Q |
120 |
taccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcgatggttgcttttcatcatttcctgcaa |
219 |
Q |
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| T |
34873785 |
taccgttaagtccatttccttcacttcaccagaacctgcaagcacccttaaggcatctcaagagtttgttgcgatggttgcttttcatcatttcctgcaa |
34873686 |
T |
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| Q |
220 |
aatgaaaacaacagttaagtgttgcaatctatgatgtttctttcctcaactgatttataaatg--tttttcattgtct |
295 |
Q |
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| T |
34873685 |
aatgaaaacaccagttaagtcttgcaatctatgatgtttctttcctcaactgatatataaatgcatttttcattgtct |
34873608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 295
Target Start/End: Original strand, 34871741 - 34872016
Alignment:
| Q |
22 |
aagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactgcacaatcctcttttctcatcaactgtta |
121 |
Q |
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| T |
34871741 |
aagcttcaagaactatgtcaaaaaaactcttacccacttcccaaataccaaacaacccatgaaggaccactgcacaatcctcttttttcatcaaccgtta |
34871840 |
T |
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| Q |
122 |
ccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcgatggttgcttttcatcatttcctgcaaaa |
221 |
Q |
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| T |
34871841 |
ccgttaagtctatttccttcacttcaccaaaaccagcaagcacccttaaggcatctcaagagtttgctgcgatggttgcttttcatcatttcctgcaaaa |
34871940 |
T |
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| Q |
222 |
tgaaaacaacagttaagtgttgcaatctatgatgtttctttcctcaactgatttataaatg--tttttcattgtct |
295 |
Q |
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| T |
34871941 |
tgaaaacaacagttaagtcttgcaatccatgatgtttctttcctcaactgatttataaatgcatttttcattgtct |
34872016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 9911056 - 9911247
Alignment:
| Q |
21 |
caagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactgcacaatcctcttttctcatcaactgtt |
120 |
Q |
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| T |
9911056 |
caagcttcaagaactatgtcaaaaaaattcataccctcttcccgaataccaaacaacccgtgaaggaccaccacacaattctcgtttctcaacaaccgtt |
9911155 |
T |
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| Q |
121 |
accgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcgatggttgcttttcatcattt |
212 |
Q |
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| T |
9911156 |
actgttaactccatttccttctcttctcctgaaccagcacgcaccattaagctgtctcaagattctgctgccatggttgcttttcatcattt |
9911247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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