View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16284_high_12 (Length: 279)
Name: NF16284_high_12
Description: NF16284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16284_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 55 - 228
Target Start/End: Complemental strand, 6014655 - 6014482
Alignment:
| Q |
55 |
catacaattagatccttaaagccaatctaattgccgatgtattttgatttgatagattaatttcaaaggtctattttattttgttatagggtgtgagcag |
154 |
Q |
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| T |
6014655 |
catacaattagatccttaaagccaatctaattgccgatgtattttgatttgatagattaatttcaaaggtctattttattttgttatagggtttgagcat |
6014556 |
T |
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| Q |
155 |
taaaaatcctttatttgatttatttatttttgataaaaatttatgcatgtggagaataacagtgtaggttaata |
228 |
Q |
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| T |
6014555 |
taaaaatcctttatttgatttatttatttttgataaaaatttatgtatgtggagaataacagtgtaggttaata |
6014482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 6014264 - 6014215
Alignment:
| Q |
212 |
aacagtgtaggttaatagttagaggtttgacagtttttaatacatgtgcg |
261 |
Q |
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| T |
6014264 |
aacagtgtaggttaatagttagaggtttgacaatttttaatacatgtgcg |
6014215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 33026210 - 33026174
Alignment:
| Q |
18 |
cacataaaaattagtggatgtgttctaactaacccca |
54 |
Q |
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| T |
33026210 |
cacataaaaattagtgggtgtgttctaacaaacccca |
33026174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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