View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16284_high_6 (Length: 367)
Name: NF16284_high_6
Description: NF16284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16284_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 5391350 - 5391702
Alignment:
| Q |
1 |
tgacaataatttgtttgtttagtttaatttaccaacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcc |
100 |
Q |
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| T |
5391350 |
tgacaataatttgtttgtttagtttaatttaccaacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcc |
5391449 |
T |
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| Q |
101 |
tccgtgaaaggggactcatggggcttgatcttaccgactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagattca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
5391450 |
tccgtgaaaggggactcatggggcttgatcttaccgactatttcaaaggatccaaagtagtgcttgattcccgtttgaagggacacatgacaaagattca |
5391549 |
T |
|
| Q |
201 |
gagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaacttcgcagttttgagcctctgtgggcatgctggtccacgagacatagaa |
300 |
Q |
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| T |
5391550 |
gagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaactttgcagttttgagcctctgtgggcatgctggtccacgagacatagaa |
5391649 |
T |
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| Q |
301 |
aatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttgat |
353 |
Q |
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| T |
5391650 |
aatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttgat |
5391702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 31 - 351
Target Start/End: Original strand, 5395191 - 5395511
Alignment:
| Q |
31 |
accaacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatc |
130 |
Q |
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| T |
5395191 |
accaacctcttctaacaagatatcctcctgtgtgtaatagaaattgggtgtgacaaggcgtggcacatcctccgtgaagggggactcatgggccttgatc |
5395290 |
T |
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| Q |
131 |
ttaccgactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagattcagagtatttgggatgagggctcgaaggacgt |
230 |
Q |
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| T |
5395291 |
ttaccgatcgtttcgaaggatcctaggtagtgcttagttcctgtttgaagggacacatggcaaagattgagagtatttgggatgagggctcgaaggacgt |
5395390 |
T |
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| Q |
231 |
tccttaacattgaaccgttaacttcgcagttttgagcctctgtgggcatgctggtccacgagacatagaaaatatgtgtcacatcagttaagggagagag |
330 |
Q |
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| T |
5395391 |
tccttaacattgaaccgttaacttcgcagttttgagcctctgtaggcatgctggtccacgagacatagaaaatatgtgtcacatcagttaagggagagag |
5395490 |
T |
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| Q |
331 |
cttcaattcaacgtctttttg |
351 |
Q |
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||||||||| ||||||||||| |
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| T |
5395491 |
cttcaattcgacgtctttttg |
5395511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 34 - 353
Target Start/End: Original strand, 5401341 - 5401660
Alignment:
| Q |
34 |
aacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatctta |
133 |
Q |
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||||||||| | ||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| || ||||||||| |
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| T |
5401341 |
aacctcttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgaggcgtggcacatcctctgtgaagggggactcatgaggtttgatctta |
5401440 |
T |
|
| Q |
134 |
ccgactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagattcagagtatttgggatgagggctcgaaggacgttcc |
233 |
Q |
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|||| ||||| |||| ||| | ||||||||| || |||||||| || ||||| ||||||| ||| ||||||||| |||||| |||||||||||| |
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| T |
5401441 |
ccgatgatttcgaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttgaaggacgttcc |
5401540 |
T |
|
| Q |
234 |
ttaacattgaaccgttaacttcgcagttttgagcctctgtgggcatgctggtccacgagacatagaaaatatgtgtcacatcagttaagggagagagctt |
333 |
Q |
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| T |
5401541 |
tcaacatggcaccattcacctcacaattttgagcctccgtgggtctgctggtccacgagacatagaatatatgggtcacgtctgttaaaggggatagctt |
5401640 |
T |
|
| Q |
334 |
caattcaacgtctttttgat |
353 |
Q |
| |
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||||||||| || ||||||| |
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| T |
5401641 |
caattcaacatcgttttgat |
5401660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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