View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16284_low_1 (Length: 555)
Name: NF16284_low_1
Description: NF16284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16284_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 138 - 538
Target Start/End: Original strand, 52686489 - 52686893
Alignment:
| Q |
138 |
gatatttttctttagaatagaaacatgtatctgtatgtcttatattaagtggataatttatagtgtagaaactcatataatcaaaatagtttggtaacaa |
237 |
Q |
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| T |
52686489 |
gatatttttctttagaatagaaacatgtatctgtatgtcttatattaagtggataatttatagtgtagaaactcatataatcaaaatagtttggtagcaa |
52686588 |
T |
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| Q |
238 |
ttaatttaacttcatatggttgatatttagataaacttatgggaaaatgagttaatttctttacctaaaaatatcaataaactgtaaattgttcatgtca |
337 |
Q |
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| T |
52686589 |
tt----taacttcatatggtttatatttagataaatttatgggaaaatgagttaatttctttacctaaaaatatcaataaactgtaaattgttcatgtta |
52686684 |
T |
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| Q |
338 |
atacgaatgttaattgacaatgaatttatattgattttgtttaagcgatgtgtcacaaactcacaacattc----ttannnnnnnnnnnnnaattttctg |
433 |
Q |
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| T |
52686685 |
atacgaatgttaattgacaatgaatttatattgattttgtttaagcgatgtgtcacaaactcacaacattctttttttttttttttaaaaaaaatttctg |
52686784 |
T |
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| Q |
434 |
actgtcacacaatattcttaactatgatacgtagaagtatggggcggagga----aagtattaatttatgcatggttggtagaaatagtcgatataaggc |
529 |
Q |
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| T |
52686785 |
actgtcacacaatattcttaactatgatacgtagaagtatggggcggaggaaattaagtattaatttatgcatggttggtagaaatagtcaatataaggc |
52686884 |
T |
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| Q |
530 |
attagtaac |
538 |
Q |
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| T |
52686885 |
attagtaac |
52686893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 52686363 - 52686460
Alignment:
| Q |
11 |
cataggttagtgatgttgttgtacacttgtacgtgtatgaaagtgagtgctaatcttctttgttttgttgcacttgcacatcagaatagccttcgtctg |
109 |
Q |
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| T |
52686363 |
cataggttagtggtgttgttgtacacttgtacgtgtatgaaagtgagtgttaatc-tctttgttttgttgcacttgcacatcagaatagccttcgtctg |
52686460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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