View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16284_low_10 (Length: 350)
Name: NF16284_low_10
Description: NF16284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16284_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 6035301 - 6035617
Alignment:
| Q |
19 |
attaaaaccaattatatatactccacaatcagttgtgacacatccaaaatgaaaccaaatataaactaaacccgttactttggtccatcatcactaatat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6035301 |
attaaaaccaattatatatactccacaatcagttgtgacacatccaaaatgaaaccaaatataaactaaacccgttactttggtccatcatcactaatat |
6035400 |
T |
|
| Q |
119 |
atttccattata-tcataattacaaaataatcaaacgacgaacaaataaaatagggnnnnnnnntaattttacaggaagtgcattttcttgtggagcatg |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
6035401 |
atttccattatattcataattacaaaataatcaaacgacgaacaaataaaatagggaaaaaaaataatttgacaggaagtacattttcttgtggagcatg |
6035500 |
T |
|
| Q |
218 |
caaccaaacatctttctcccatgaattctatgttttccattttcatgcaaaacaattaagttgggcatgtgatgatcccttaaaacaaaacagaaatatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6035501 |
caaccaaacatctttctcccatgaattctatgttttccattttcatgcaaaacaattaagttgggcatgtgatgatcccttaaaacaaaacagaaatagt |
6035600 |
T |
|
| Q |
318 |
agttaggttttgggtac |
334 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6035601 |
agttaggttttgggtac |
6035617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University