View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16284_low_12 (Length: 322)
Name: NF16284_low_12
Description: NF16284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16284_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 47299479 - 47299187
Alignment:
| Q |
12 |
aacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaa |
111 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47299479 |
aacctgtgtggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaatacaattaa |
47299380 |
T |
|
| Q |
112 |
ggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47299379 |
ggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgc |
47299280 |
T |
|
| Q |
212 |
accacattcgatcttatcacttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgcatc |
304 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47299279 |
accacattcgatcttatcgcttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgcatc |
47299187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 301
Target Start/End: Complemental strand, 47292872 - 47292583
Alignment:
| Q |
12 |
aacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaa |
111 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |
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| T |
47292872 |
aacctgtatggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccatcttgaatacaaacaaattttttcgccaaataccattaa |
47292773 |
T |
|
| Q |
112 |
ggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgc |
211 |
Q |
| |
|
|||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
47292772 |
ggaagaagatactgcttctctagttcatcgatctttcttctttagagcttctgacatagctgcgcttcgtctcttggttccatttcaccttcgtcaatgc |
47292673 |
T |
|
| Q |
212 |
accacattcgatcttatcacttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgc |
301 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
47292672 |
accacatttgatcttatcgcttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcggataaagaggtacgaatgatgtgc |
47292583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 12 - 300
Target Start/End: Original strand, 47267376 - 47267664
Alignment:
| Q |
12 |
aacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaa |
111 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||| |||| |||||||||||||||| |||||||||||||||| ||||| ||||||| || || |
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|
| T |
47267376 |
aacctgtatggaatagggagattctaatggcaagagacccaccacacattacatgcaaccatcatgaatacgaacaaattttttcgtcaaatacaatcaa |
47267475 |
T |
|
| Q |
112 |
ggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgc |
211 |
Q |
| |
|
|||| ||||||| | | ||||| |||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||||||||| || || |
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| T |
47267476 |
ggaagaagataccacaaccctagttcatcaatctttcttctttaggacttcagacattgttgtgcttcgtctcttggttccatttcaccttcgccattgt |
47267575 |
T |
|
| Q |
212 |
accacattcgatcttatcacttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
47267576 |
accacattcgatcttatcacttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtg |
47267664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 36 - 304
Target Start/End: Original strand, 47283362 - 47283633
Alignment:
| Q |
36 |
taatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaaggaaaaagatactgcttctc---t |
132 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||| |||||| |||||||| ||| || |||||| || |||||| ||||| ||||| || | |
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| T |
47283362 |
taatggctagagaccctccacgcattacttgcaaccatcgtgaatatgaacaaatacttacgtcaaatatcaacaaggaagaagatgctgctactaccat |
47283461 |
T |
|
| Q |
133 |
agtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcact |
232 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||||| || | |||| |||| |||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
47283462 |
agtccatcaatctttcttctttacactttctcacatagctgcaatccgtcacttgattccatttcaccttcgtcaatgcagtacatttgatcttatcacc |
47283561 |
T |
|
| Q |
233 |
tcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgcatc |
304 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
47283562 |
gcatgtttttggtgttgccgcacaaaagcattgcagttagagccagatgaagaagtacgaatgatgtgcatc |
47283633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 47242465 - 47242764
Alignment:
| Q |
12 |
aacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaatac---cat |
108 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| ||| |
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| T |
47242465 |
aacctgtatggaatagggagattctaatggcaagagaccctccatacattacatgcaaccatcgtgaatacgaacaaatactttcgccaaatacctacat |
47242564 |
T |
|
| Q |
109 |
taaggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaa |
208 |
Q |
| |
|
|| ||| |||||||| || |||||||||||||||||||||| | | || || ||||||| ||||| |||||||||| ||||||||| ||| |
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|
| T |
47242565 |
caaagaagaagatactactatcgtagtccatcaatctttcttcttcacacctgctcacatagctgtgattcgttgcttggttccaattcaccttcatcat |
47242664 |
T |
|
| Q |
209 |
tgcaccac----attcgatcttatcacttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgcatc |
304 |
Q |
| |
|
||||| || ||| |||||||||||| ||| || |||||| || |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
47242665 |
tgcactacattaatttgatcttatcactgcatattattggtgctgccgcacaaaagcattgcagatagagccagatgaagaggtacgaatgatgtgcatc |
47242764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 47256593 - 47256888
Alignment:
| Q |
12 |
aacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaatac---cat |
108 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||| |||||||| ||| |||||||||| ||| |
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| T |
47256593 |
aacctgtatggaatagggagattctaatggcaagagaccctccatacattacttgcaaccatcgtgaatatgaacaaatacttccgccaaatacgtacat |
47256692 |
T |
|
| Q |
109 |
taaggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaa |
208 |
Q |
| |
|
|||||| |||||||| || | |||||||||||||||||||||| | | | || ||||||| | |||||| |||||||||| |||||||| || |
|
|
| T |
47256693 |
caaggaagaagatactactattgtagtccatcaatctttcttcttcacatccgctcacatagctgcgattcgtcgcttggttccacttcacctttctcgg |
47256792 |
T |
|
| Q |
209 |
tgcaccacattcgatcttatcacttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgcatc |
304 |
Q |
| |
|
||||| ||| ||||||||||||| |||||| |||||| || |||||||||||||||||| |||| |||||||||| || ||||||||||||||| |
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|
| T |
47256793 |
tgcactgcatacgatcttatcactgcatgttattggtgctgccgcacaaaagcattgcaggtagaaccagatgaagatgtgcgaatgatgtgcatc |
47256888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 36 - 304
Target Start/End: Original strand, 47278769 - 47279040
Alignment:
| Q |
36 |
taatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaaggaaaaagatactgcttctc---t |
132 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||| ||||||||||||||| |||||| |||||| || |||||| ||||| |||| || | |
|
|
| T |
47278769 |
taatggcaagagaccctccacgtgttacttgcaaccatcatgaatacgaacaaatactttcgtcaaatatcaacaaggaagaagatgttgctgctaccat |
47278868 |
T |
|
| Q |
133 |
agtccatcaatctttcttctttagagctt-ctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcac |
231 |
Q |
| |
|
||||||||| ||||||||||||| |||| || |||||| |||||| ||| |||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
47278869 |
agtccatcactctttcttctttac-gcttactcgcatagctgagattcgtcgtttgattccatttcaccttcgtcaatgcagtacatttgatcttatcac |
47278967 |
T |
|
| Q |
232 |
ttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgcatc |
304 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
47278968 |
cgcatgtttttggtgttgccgtacaaaagcattgcagttagagccagatgaagaagtacgaatgatgtgcatc |
47279040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 32731136 - 32731431
Alignment:
| Q |
12 |
aacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaatacc---at |
108 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||||| ||||||||||||||| || |
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|
| T |
32731136 |
aacctgtatggaatagggagattctaatggcaagagaccctccatgtattacatgcaaccatcgtgaatacgaacaaatactttcgccaaatacctacat |
32731235 |
T |
|
| Q |
109 |
taaggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaa |
208 |
Q |
| |
|
|| ||| |||||||| || |||||||||||||||||||||| | | || || ||||||| | ||||| |||||||||| ||||||||| ||| |
|
|
| T |
32731236 |
caaagaagaagatactactatcgtagtccatcaatctttcttcttcacacctgctcacatagctgcgattcgttgcttggttccaattcaccttcatcat |
32731335 |
T |
|
| Q |
209 |
tgcaccacattcgatcttatcacttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgcatc |
304 |
Q |
| |
|
||||| ||||| |||||||||| | |||||| |||||| || |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
32731336 |
tgcactacatttgatcttatcagtgcatgttattggtgctgccgcacaaaagcattgcagatagagccagatgaagaggtacgaatgatgtgcatc |
32731431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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